Wall clock time and date at job start Wed Apr 1 2020 05:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21309 * 120.00360 * 2 1 4 4 C 1.46755 * 119.99991 * 180.02562 * 2 1 3 5 5 C 1.40132 * 120.09305 * 359.97438 * 4 2 1 6 6 C 1.36525 * 119.90461 * 179.72677 * 5 4 2 7 7 C 1.39346 * 120.09351 * 0.02762 * 6 5 4 8 8 N 1.38885 * 119.89904 * 179.97438 * 7 6 5 9 9 C 1.46897 * 111.00091 * 299.99135 * 8 7 6 10 10 C 1.53237 * 109.34100 * 187.25864 * 9 8 7 11 11 H 1.09004 * 109.63052 * 65.88463 * 10 9 8 12 12 C 1.53001 * 109.62891 * 186.46466 * 10 9 8 13 13 N 1.47087 * 108.52252 * 306.17373 * 10 9 8 14 14 C 1.36938 * 120.88187 * 231.16062 * 13 10 9 15 15 H 1.08001 * 119.99616 * 125.20574 * 14 13 10 16 16 C 1.38812 * 120.00160 * 305.21039 * 14 13 10 17 17 N 1.31624 * 119.99744 * 341.97441 * 16 14 13 18 18 Si 1.86795 * 120.00229 * 161.98275 * 16 14 13 19 19 H 1.48498 * 109.47293 * 89.99594 * 18 16 14 20 20 H 1.48492 * 109.47083 * 209.99828 * 18 16 14 21 21 H 1.48502 * 109.46763 * 329.99757 * 18 16 14 22 22 C 1.47083 * 118.23431 * 51.18390 * 13 10 9 23 23 H 1.08997 * 109.62798 * 68.52729 * 22 13 10 24 24 C 1.52993 * 109.62557 * 188.90940 * 22 13 10 25 25 C 1.46898 * 111.00692 * 64.30251 * 8 7 6 26 26 C 1.39293 * 120.18726 * 359.97438 * 7 6 5 27 27 N 1.48012 * 119.94428 * 179.97438 * 26 7 6 28 28 O 1.21805 * 119.99799 * 179.97438 * 27 26 7 29 29 O 1.21804 * 120.00544 * 359.97438 * 27 26 7 30 30 C 1.36554 * 120.10331 * 359.95513 * 26 7 6 31 31 H 1.09000 * 109.47504 * 269.99818 * 1 2 3 32 32 H 1.09005 * 109.47180 * 29.99801 * 1 2 3 33 33 H 1.09002 * 109.47585 * 149.99942 * 1 2 3 34 34 H 1.08003 * 120.04715 * 359.71169 * 5 4 2 35 35 H 1.08000 * 119.95816 * 180.02562 * 6 5 4 36 36 H 1.08993 * 109.49933 * 307.22116 * 9 8 7 37 37 H 1.09000 * 109.49214 * 67.30339 * 9 8 7 38 38 H 1.08994 * 109.47409 * 60.00321 * 12 10 9 39 39 H 1.09004 * 109.47208 * 179.97438 * 12 10 9 40 40 H 1.09001 * 109.47458 * 299.99780 * 12 10 9 41 41 H 0.96998 * 119.99873 * 185.19359 * 17 16 14 42 42 H 1.09004 * 109.47124 * 59.45373 * 24 22 13 43 43 H 1.09001 * 109.47375 * 179.45826 * 24 22 13 44 44 H 1.09006 * 109.47614 * 299.45599 * 24 22 13 45 45 H 1.08997 * 109.48924 * 292.70399 * 25 8 7 46 46 H 1.09005 * 109.49169 * 52.78109 * 25 8 7 47 47 H 1.07993 * 120.05275 * 180.02562 * 30 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2407 -1.2709 -0.0006 5 6 1.5420 -2.4856 -0.0006 6 6 2.2285 -3.6657 -0.0067 7 6 3.6219 -3.6634 -0.0125 8 7 4.3162 -4.8663 -0.0182 9 6 3.9906 -5.6677 1.1690 10 6 4.9056 -6.8960 1.2188 11 1 5.9364 -6.5785 1.3762 12 6 4.4676 -7.8173 2.3590 13 7 4.7988 -7.6104 -0.0625 14 6 4.5405 -8.9548 -0.0982 15 1 3.7037 -9.3288 -0.6693 16 6 5.3543 -9.8366 0.5997 17 7 6.5508 -9.4559 0.9946 18 14 4.7515 -11.5637 0.9781 19 1 5.1350 -12.4756 -0.1293 20 1 5.3667 -12.0363 2.2442 21 1 3.2733 -11.5519 1.1202 22 6 4.9772 -6.8427 -1.3043 23 1 6.0149 -6.5201 -1.3894 24 6 4.6104 -7.7161 -2.5056 25 6 4.0594 -5.6166 -1.2547 26 6 4.3204 -2.4582 -0.0124 27 7 5.8005 -2.4621 -0.0179 28 8 6.4122 -1.4087 -0.0184 29 8 6.4068 -3.5184 -0.0220 30 6 3.6416 -1.2733 -0.0077 31 1 -0.3634 0.0000 1.0276 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 0.4620 -2.4883 0.0046 35 1 1.6909 -4.6024 -0.0072 36 1 4.1396 -5.0666 2.0659 37 1 2.9509 -5.9907 1.1158 38 1 3.4395 -8.1385 2.1922 39 1 5.1197 -8.6901 2.3918 40 1 4.5313 -7.2800 3.3053 41 1 7.1484 -10.0937 1.4152 42 1 3.5733 -8.0396 -2.4165 43 1 4.7343 -7.1418 -3.4237 44 1 5.2623 -8.5894 -2.5326 45 1 3.0188 -5.9402 -1.2741 46 1 4.2584 -4.9783 -2.1155 47 1 4.1839 -0.3394 -0.0081 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882519503.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:21 Heat of formation + Delta-G solvation = 23.755616 kcal Electronic energy + Delta-G solvation = -31966.964135 eV Core-core repulsion = 27733.314381 eV Total energy + Delta-G solvation = -4233.649754 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.21939 -41.60921 -40.53988 -39.08181 -37.52018 -36.54153 -34.50978 -33.75995 -33.32793 -31.84021 -30.40604 -29.30100 -27.64709 -27.51289 -26.78821 -25.38091 -23.70158 -23.24172 -22.02352 -21.59248 -20.83656 -19.68936 -19.32130 -18.46174 -18.27797 -17.88057 -17.24045 -17.04311 -16.79776 -16.36600 -16.11836 -16.08269 -15.74309 -15.50951 -15.43180 -14.74085 -14.46855 -14.08358 -14.03274 -13.64653 -13.48442 -13.30084 -13.21186 -13.01317 -12.79252 -12.76492 -12.67247 -12.56857 -12.46079 -12.30106 -12.23699 -12.19934 -12.12499 -11.98564 -11.64821 -11.55658 -11.26620 -11.00691 -10.84141 -10.27766 -10.12545 -9.52717 -8.24072 -7.68903 -5.55259 -1.28030 -0.76736 0.25445 0.45040 1.09226 1.46522 1.51212 1.58127 2.23311 2.40857 2.52300 2.82609 3.28769 3.31376 3.54792 3.58128 3.63984 3.69833 3.87016 4.15238 4.18710 4.30366 4.33529 4.39997 4.47957 4.57742 4.64678 4.68559 4.69909 4.74408 4.77790 4.80725 4.86674 4.93842 4.96968 4.99640 5.11382 5.23288 5.25516 5.33422 5.48626 5.53802 5.71140 5.77249 5.84895 5.99120 6.15218 6.37644 6.57734 6.64210 7.29683 7.84112 8.61608 9.20826 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.003139 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.419102 B = 8916.687114 C = 9514.240590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.403 3.597 3 O -0.498 6.498 4 C -0.181 4.181 5 C 0.020 3.980 6 C -0.157 4.157 7 C 0.189 3.811 8 N -0.521 5.521 9 C 0.069 3.931 10 C 0.200 3.800 11 H -0.007 1.007 12 C -0.135 4.135 13 N -0.589 5.589 14 C -0.263 4.263 15 H 0.054 0.946 16 C -0.002 4.002 17 N -0.912 5.912 18 Si 0.939 3.061 19 H -0.286 1.286 20 H -0.296 1.296 21 H -0.261 1.261 22 C 0.166 3.834 23 H -0.002 1.002 24 C -0.117 4.117 25 C 0.074 3.926 26 C -0.059 4.059 27 N 0.029 4.971 28 O -0.209 6.209 29 O -0.138 6.138 30 C -0.008 4.008 31 H 0.123 0.877 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.208 0.792 35 H 0.173 0.827 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.044 0.956 41 H 0.251 0.749 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.038 0.962 45 H 0.059 0.941 46 H 0.070 0.930 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.306 14.290 -2.216 24.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.283 3.717 3 O -0.376 6.376 4 C -0.183 4.183 5 C 0.002 3.998 6 C -0.177 4.177 7 C 0.092 3.908 8 N -0.242 5.242 9 C -0.058 4.058 10 C 0.094 3.906 11 H 0.011 0.989 12 C -0.193 4.193 13 N -0.314 5.314 14 C -0.393 4.393 15 H 0.071 0.929 16 C -0.201 4.201 17 N -0.553 5.553 18 Si 0.766 3.234 19 H -0.212 1.212 20 H -0.222 1.222 21 H -0.186 1.186 22 C 0.060 3.940 23 H 0.016 0.984 24 C -0.175 4.175 25 C -0.052 4.052 26 C -0.144 4.144 27 N 0.544 4.456 28 O -0.414 6.414 29 O -0.361 6.361 30 C -0.028 4.028 31 H 0.141 0.859 32 H 0.113 0.887 33 H 0.140 0.860 34 H 0.225 0.775 35 H 0.190 0.810 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.057 0.943 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.052 14.918 -2.061 24.285 hybrid contribution 1.007 -1.262 0.356 1.653 sum -18.044 13.657 -1.705 22.694 Atomic orbital electron populations 1.22327 0.88533 1.07110 1.06963 1.22982 0.93897 0.85549 0.69255 1.90610 1.73344 1.35383 1.38234 1.20807 0.91386 0.97751 1.08338 1.22048 1.03579 0.88433 0.85765 1.21949 0.91447 1.02120 1.02170 1.19238 0.92110 0.89853 0.89578 1.59233 1.57054 1.03153 1.04795 1.22668 0.99049 0.94169 0.89911 1.20153 0.93787 0.89561 0.87109 0.98891 1.21840 1.01386 1.00610 0.95453 1.44251 1.83472 1.04459 0.99253 1.18775 1.07870 0.82600 1.30087 0.92873 1.26204 0.94363 1.00230 0.99341 1.70198 1.07023 1.35183 1.42925 0.85760 0.79022 0.81576 0.76998 1.21207 1.22211 1.18564 1.20623 0.94423 0.90499 0.88504 0.98435 1.21552 1.01318 0.98931 0.95684 1.22551 0.99213 0.94544 0.88889 1.21027 0.78420 0.96560 1.18385 1.43860 1.04375 1.00047 0.97297 1.94462 1.69768 1.21463 1.55720 1.94733 1.69826 1.19750 1.51750 1.21026 0.95450 0.96440 0.89882 0.85880 0.88707 0.86050 0.77491 0.80958 0.91658 0.92304 0.93022 0.91843 0.93705 0.94011 0.92283 0.91669 0.94289 0.92251 0.91125 0.83321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.53 9.74 71.23 0.69 0.17 16 2 C 0.40 5.48 7.21 27.91 0.20 5.68 16 3 O -0.50 -11.55 17.08 -3.12 -0.05 -11.60 16 4 C -0.18 -2.72 5.87 -20.14 -0.12 -2.84 16 5 C 0.02 0.17 9.31 22.33 0.21 0.38 16 6 C -0.16 -2.42 8.63 22.14 0.19 -2.23 16 7 C 0.19 4.94 4.64 38.55 0.18 5.12 16 8 N -0.52 -17.28 2.44 -694.36 -1.69 -18.97 16 9 C 0.07 2.36 4.53 86.38 0.39 2.75 16 10 C 0.20 8.96 3.17 44.96 0.14 9.10 16 11 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 12 C -0.13 -5.79 8.11 71.98 0.58 -5.21 16 13 N -0.59 -27.63 2.80 -650.65 -1.82 -29.45 16 14 C -0.26 -13.14 6.82 84.03 0.57 -12.56 16 15 H 0.05 2.62 7.23 -2.91 -0.02 2.60 16 16 C 0.00 -0.12 3.28 84.86 0.28 0.16 16 17 N -0.91 -52.20 11.98 21.65 0.26 -51.94 16 18 Si 0.94 41.62 29.59 68.60 2.03 43.65 16 19 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.30 -13.39 7.11 99.48 0.71 -12.69 16 21 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 22 C 0.17 6.90 3.65 44.96 0.16 7.06 16 23 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 24 C -0.12 -4.27 8.21 71.98 0.59 -3.68 16 25 C 0.07 2.40 4.60 86.38 0.40 2.80 16 26 C -0.06 -1.72 6.83 36.24 0.25 -1.48 16 27 N 0.03 1.08 4.45 -46.80 -0.21 0.87 16 28 O -0.21 -7.96 18.42 18.88 0.35 -7.61 16 29 O -0.14 -5.97 17.09 18.88 0.32 -5.64 16 30 C -0.01 -0.19 9.05 22.33 0.20 0.01 16 31 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.09 0.32 8.14 -2.38 -0.02 0.30 16 33 H 0.12 -0.44 6.46 -2.39 -0.02 -0.46 16 34 H 0.21 -0.50 6.35 -2.91 -0.02 -0.52 16 35 H 0.17 2.08 7.13 -2.91 -0.02 2.06 16 36 H 0.06 2.15 8.09 -2.39 -0.02 2.13 16 37 H 0.06 1.75 7.36 -2.39 -0.02 1.73 16 38 H 0.05 2.08 7.97 -2.39 -0.02 2.06 16 39 H 0.06 3.17 4.66 -2.38 -0.01 3.16 16 40 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.25 14.03 8.32 -92.71 -0.77 13.26 16 42 H 0.06 2.01 7.61 -2.38 -0.02 2.00 16 43 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.04 1.63 7.68 -2.38 -0.02 1.61 16 45 H 0.06 1.66 7.58 -2.39 -0.02 1.64 16 46 H 0.07 2.13 8.09 -2.38 -0.02 2.11 16 47 H 0.15 3.85 7.16 -2.91 -0.02 3.83 16 Total: -1.00 -74.89 379.35 5.11 -69.78 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 1.00 Total: 5.68 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 4.93 Total: 5.24 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -3.46 Total: -99.50 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: 0.62 Total: -24.86 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -74.89 5.11 -69.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882519503.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.538 kcal (2) G-P(sol) polarization free energy of solvation -74.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds