Wall clock time and date at job start Wed Apr 1 2020 04:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00241 * 2 1 4 4 H 1.08998 * 109.49714 * 29.92791 * 3 2 1 5 5 C 1.53623 * 109.65751 * 269.84879 * 3 2 1 6 6 N 1.46929 * 108.54451 * 294.84745 * 5 3 2 7 7 C 1.34773 * 120.63252 * 126.36564 * 6 5 3 8 8 O 1.21362 * 119.99799 * 350.98426 * 7 6 5 9 9 C 1.49367 * 120.00152 * 170.97463 * 7 6 5 10 10 O 1.21359 * 119.99812 * 353.54669 * 9 7 6 11 11 N 1.34780 * 120.00065 * 173.54654 * 9 7 6 12 12 C 1.39108 * 119.99802 * 185.09272 * 11 9 7 13 13 C 1.39707 * 119.57649 * 174.21613 * 12 11 9 14 14 C 1.38655 * 119.49421 * 180.02562 * 13 12 11 15 15 C 1.38345 * 118.66956 * 359.74585 * 14 13 12 16 16 C 1.40592 * 119.13501 * 0.49684 * 15 14 13 17 17 C 1.41340 * 119.78582 * 179.77060 * 16 15 14 18 18 H 1.08000 * 120.00191 * 359.72344 * 17 16 15 19 19 C 1.40033 * 120.00224 * 179.72953 * 17 16 15 20 20 N 1.30738 * 119.99717 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99995 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47165 * 269.99464 * 21 19 17 23 23 H 1.48491 * 109.47384 * 29.99558 * 21 19 17 24 24 H 1.48506 * 109.46955 * 149.99964 * 21 19 17 25 25 N 1.31935 * 119.58252 * 354.24134 * 12 11 9 26 26 C 1.46925 * 118.73671 * 306.09446 * 6 5 3 27 27 C 1.53197 * 108.77336 * 53.86217 * 26 6 5 28 28 C 1.53041 * 109.31255 * 305.35827 * 27 26 6 29 29 H 1.08997 * 109.46380 * 301.35428 * 28 27 26 30 30 C 1.52996 * 109.46036 * 181.38764 * 28 27 26 31 31 H 1.09005 * 109.47253 * 300.00760 * 1 2 3 32 32 H 1.09000 * 109.47117 * 60.00282 * 1 2 3 33 33 H 1.08995 * 109.47277 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.73734 * 175.11110 * 5 3 2 35 35 H 1.09001 * 109.66579 * 54.54312 * 5 3 2 36 36 H 0.96994 * 119.99499 * 5.09558 * 11 9 7 37 37 H 1.08002 * 120.25570 * 0.04644 * 13 12 11 38 38 H 1.07995 * 120.66403 * 180.02562 * 14 13 12 39 39 H 1.07999 * 120.43619 * 180.26380 * 15 14 13 40 40 H 0.97005 * 120.00051 * 180.02562 * 20 19 17 41 41 H 1.08996 * 109.58523 * 173.64270 * 26 6 5 42 42 H 1.08994 * 109.59142 * 293.92983 * 26 6 5 43 43 H 1.08996 * 109.50154 * 65.31657 * 27 26 6 44 44 H 1.09006 * 109.49293 * 185.41285 * 27 26 6 45 45 H 1.09001 * 109.47165 * 60.00333 * 30 28 27 46 46 H 1.08997 * 109.47308 * 180.02562 * 30 28 27 47 47 H 1.09001 * 109.47063 * 300.00306 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3448 2.0000 0.5126 5 6 2.2240 1.7760 -1.4467 6 7 3.2200 0.9012 -2.0803 7 6 2.9476 0.2821 -3.2461 8 8 1.8223 0.3105 -3.6997 9 6 4.0308 -0.4386 -3.9798 10 8 5.1779 -0.3693 -3.5897 11 7 3.7342 -1.1659 -5.0751 12 6 4.7227 -1.9221 -5.6965 13 6 4.3812 -2.7663 -6.7560 14 6 5.3678 -3.5197 -7.3738 15 6 6.6703 -3.4066 -6.9214 16 6 6.9493 -2.5433 -5.8474 17 6 8.2744 -2.4209 -5.3709 18 1 9.0678 -2.9929 -5.8287 19 6 8.5583 -1.5581 -4.3052 20 7 7.5979 -0.8653 -3.7513 21 14 10.3096 -1.3958 -3.6760 22 1 10.5450 -2.3959 -2.6038 23 1 11.2604 -1.6332 -4.7916 24 1 10.5157 -0.0293 -3.1323 25 7 5.9706 -1.8333 -5.2776 26 6 4.5207 0.7189 -1.4220 27 6 4.2833 0.2645 0.0217 28 6 3.3594 1.2640 0.7214 29 1 3.8132 2.2547 0.6998 30 6 3.1477 0.8320 2.1738 31 1 -0.3634 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.5861 2.8041 -1.4497 35 1 1.2836 1.7160 -1.9946 36 1 2.8315 -1.1619 -5.4300 37 1 3.3567 -2.8314 -7.0915 38 1 5.1250 -4.1780 -8.1947 39 1 7.4618 -3.9769 -7.3846 40 1 7.7946 -0.2673 -3.0132 41 1 5.0962 -0.0389 -1.9535 42 1 5.0674 1.6618 -1.4252 43 1 3.8188 -0.7216 0.0210 44 1 5.2357 0.2182 0.5498 45 1 4.1083 0.8035 2.6881 46 1 2.4893 1.5434 2.6722 47 1 2.6943 -0.1590 2.1956 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890197696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:14 Heat of formation + Delta-G solvation = -38.229307 kcal Electronic energy + Delta-G solvation = -31926.690916 eV Core-core repulsion = 27690.353294 eV Total energy + Delta-G solvation = -4236.337622 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.63964 -39.28329 -38.23559 -37.20382 -36.27335 -34.45573 -33.61155 -32.98985 -30.55566 -30.36285 -29.23567 -28.39722 -26.78524 -25.76474 -24.66185 -23.20939 -22.77564 -21.62165 -20.97195 -20.05456 -19.10613 -17.92382 -16.95769 -16.67090 -16.18664 -15.98512 -15.94743 -15.59373 -14.94417 -14.70117 -14.57461 -14.47496 -13.84583 -13.83426 -13.75386 -13.59431 -13.34748 -13.05909 -12.94752 -12.83286 -12.47032 -12.03137 -11.99093 -11.93769 -11.67559 -11.39769 -11.20726 -11.12289 -11.00250 -10.79673 -10.69889 -10.68334 -10.51743 -10.33435 -9.97367 -9.79976 -9.76244 -9.08894 -8.62004 -8.46735 -8.03163 -7.29370 -7.05663 -6.22600 -4.45077 1.94702 2.75183 2.82817 3.09045 3.13895 3.16412 3.23913 3.65734 3.94593 3.97213 4.01944 4.55077 4.60426 4.76407 4.86742 4.91662 4.97627 5.13665 5.27109 5.30288 5.34772 5.45828 5.48233 5.61591 5.62645 5.69423 5.78683 5.85606 5.96945 5.99317 6.06815 6.14506 6.28633 6.43914 6.48705 6.57536 6.60346 6.79589 6.80563 7.10517 7.19585 7.36144 7.47946 7.53805 7.76454 7.87548 8.06628 8.19567 8.38225 8.63845 8.93800 9.01887 10.14158 10.40977 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011734 B = 0.003821 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.711148 B = 7325.348881 C = 9191.691858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.081 3.919 4 H 0.068 0.932 5 C 0.086 3.914 6 N -0.574 5.574 7 C 0.512 3.488 8 O -0.539 6.539 9 C 0.471 3.529 10 O -0.380 6.380 11 N -0.637 5.637 12 C 0.368 3.632 13 C -0.348 4.348 14 C -0.036 4.036 15 C -0.300 4.300 16 C 0.272 3.728 17 C -0.424 4.424 18 H 0.083 0.917 19 C 0.061 3.939 20 N -0.663 5.663 21 Si 0.897 3.103 22 H -0.271 1.271 23 H -0.264 1.264 24 H -0.278 1.278 25 N -0.474 5.474 26 C 0.067 3.933 27 C -0.124 4.124 28 C -0.090 4.090 29 H 0.080 0.920 30 C -0.143 4.143 31 H 0.037 0.963 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.411 0.589 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.271 0.729 41 H 0.153 0.847 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.056 0.944 46 H 0.048 0.952 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.680 6.615 10.584 15.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C 0.022 3.978 4 H 0.086 0.914 5 C -0.037 4.037 6 N -0.308 5.308 7 C 0.296 3.704 8 O -0.417 6.417 9 C 0.249 3.751 10 O -0.245 6.245 11 N -0.284 5.284 12 C 0.130 3.870 13 C -0.374 4.374 14 C -0.060 4.060 15 C -0.324 4.324 16 C 0.147 3.853 17 C -0.454 4.454 18 H 0.101 0.899 19 C -0.167 4.167 20 N -0.282 5.282 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.188 1.188 24 H -0.203 1.203 25 N -0.193 5.193 26 C -0.054 4.054 27 C -0.162 4.162 28 C -0.109 4.109 29 H 0.099 0.901 30 C -0.200 4.200 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.247 0.753 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.083 0.917 41 H 0.170 0.830 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.129 7.267 11.569 16.431 hybrid contribution -0.337 -0.101 -0.529 0.635 sum -9.465 7.166 11.040 16.212 Atomic orbital electron populations 1.22774 0.81496 1.02735 0.99559 1.87988 1.19107 1.26786 1.94783 1.22600 0.95178 0.85462 0.94573 0.91399 1.22258 0.94225 0.93334 0.93932 1.47702 1.16529 1.45587 1.20952 1.20648 0.88659 0.79504 0.81596 1.90659 1.22635 1.60732 1.67668 1.20156 0.89377 0.82368 0.83213 1.90909 1.18148 1.54637 1.60781 1.43023 1.12849 1.45066 1.27498 1.18546 0.89044 0.89539 0.89865 1.20517 0.98842 1.11207 1.06826 1.20582 0.93000 0.95870 0.96575 1.21653 0.95794 1.09463 1.05443 1.18354 0.92218 0.87014 0.87723 1.19584 0.92629 1.20442 1.12772 0.89893 1.26135 0.98278 0.95541 0.96783 1.70303 1.31039 1.13064 1.13812 0.86498 0.83405 0.78179 0.79766 1.19616 1.18785 1.20274 1.68634 0.96045 1.25160 1.29444 1.22999 0.83708 1.05140 0.93561 1.21917 0.99279 0.99687 0.95357 1.21276 0.94164 1.00242 0.95171 0.90125 1.21762 1.01474 1.01905 0.94904 0.94427 0.93983 0.89807 0.90525 0.88871 0.75290 0.88754 0.88390 0.88398 0.91698 0.83029 0.91775 0.90731 0.90719 0.92536 0.93257 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.83 101.05 1.09 1.40 16 2 O -0.37 -4.69 8.94 -35.23 -0.31 -5.00 16 3 C 0.08 0.87 2.37 -26.39 -0.06 0.80 16 4 H 0.07 0.58 7.79 -51.93 -0.40 0.17 16 5 C 0.09 1.05 6.12 -3.49 -0.02 1.03 16 6 N -0.57 -8.87 2.91 -173.04 -0.50 -9.37 16 7 C 0.51 9.38 7.73 -11.63 -0.09 9.29 16 8 O -0.54 -10.31 15.93 5.49 0.09 -10.22 16 9 C 0.47 9.86 7.70 -11.62 -0.09 9.77 16 10 O -0.38 -8.79 8.95 5.49 0.05 -8.74 16 11 N -0.64 -13.40 5.37 -11.83 -0.06 -13.46 16 12 C 0.37 8.97 7.42 -155.10 -1.15 7.81 16 13 C -0.35 -7.84 9.96 -38.88 -0.39 -8.23 16 14 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 15 C -0.30 -7.40 9.83 -38.65 -0.38 -7.78 16 16 C 0.27 7.42 6.55 -85.00 -0.56 6.86 16 17 C -0.42 -11.23 9.14 -37.73 -0.34 -11.58 16 18 H 0.08 2.07 7.85 -52.49 -0.41 1.65 16 19 C 0.06 1.53 5.50 -17.34 -0.10 1.44 16 20 N -0.66 -17.09 8.99 55.55 0.50 -16.59 16 21 Si 0.90 18.40 29.56 -169.99 -5.02 13.38 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 24 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 25 N -0.47 -12.88 5.74 -10.28 -0.06 -12.94 16 26 C 0.07 1.00 5.98 -3.71 -0.02 0.98 16 27 C -0.12 -1.57 5.22 -26.61 -0.14 -1.71 16 28 C -0.09 -0.92 2.51 -90.58 -0.23 -1.15 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 C -0.14 -1.30 9.06 37.16 0.34 -0.97 16 31 H 0.04 0.29 8.09 -51.93 -0.42 -0.13 16 32 H 0.04 0.42 7.84 -51.93 -0.41 0.01 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.22 6.70 -51.93 -0.35 0.88 16 36 H 0.41 7.52 8.18 -40.82 -0.33 7.19 16 37 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.27 6.43 8.29 -40.82 -0.34 6.09 16 41 H 0.15 2.82 4.31 -54.80 -0.24 2.59 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.10 7.61 -51.93 -0.40 0.70 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.65 7.72 -51.93 -0.40 0.25 16 LS Contribution 379.30 15.07 5.72 5.72 Total: -1.00 -30.84 379.30 -8.87 -39.71 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -6.72 Total: 10.76 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -2.54 Total: 6.77 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.13 Total: -52.36 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.18 Total: -23.96 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.02 Total: 13.38 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.84 -8.87 -39.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890197696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.476 kcal (2) G-P(sol) polarization free energy of solvation -30.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds