Wall clock time and date at job start Wed Apr 1 2020 04:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00241 * 2 1 4 4 H 1.08998 * 109.49714 * 29.92791 * 3 2 1 5 5 C 1.53623 * 109.65751 * 269.84879 * 3 2 1 6 6 N 1.46929 * 108.54451 * 294.84745 * 5 3 2 7 7 C 1.34773 * 120.63252 * 126.36564 * 6 5 3 8 8 O 1.21362 * 119.99799 * 350.98426 * 7 6 5 9 9 C 1.49367 * 120.00152 * 170.97463 * 7 6 5 10 10 O 1.21359 * 119.99812 * 353.54669 * 9 7 6 11 11 N 1.34780 * 120.00065 * 173.54654 * 9 7 6 12 12 C 1.39108 * 119.99802 * 185.09272 * 11 9 7 13 13 C 1.39707 * 119.57649 * 174.21613 * 12 11 9 14 14 C 1.38655 * 119.49421 * 180.02562 * 13 12 11 15 15 C 1.38345 * 118.66956 * 359.74585 * 14 13 12 16 16 C 1.40592 * 119.13501 * 0.49684 * 15 14 13 17 17 C 1.41340 * 119.78582 * 179.77060 * 16 15 14 18 18 H 1.08000 * 120.00191 * 359.72344 * 17 16 15 19 19 C 1.40033 * 120.00224 * 179.72953 * 17 16 15 20 20 N 1.30738 * 119.99717 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99995 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47165 * 269.99464 * 21 19 17 23 23 H 1.48491 * 109.47384 * 29.99558 * 21 19 17 24 24 H 1.48506 * 109.46955 * 149.99964 * 21 19 17 25 25 N 1.31935 * 119.58252 * 354.24134 * 12 11 9 26 26 C 1.46925 * 118.73671 * 306.09446 * 6 5 3 27 27 C 1.53197 * 108.77336 * 53.86217 * 26 6 5 28 28 C 1.53041 * 109.31255 * 305.35827 * 27 26 6 29 29 H 1.08997 * 109.46380 * 301.35428 * 28 27 26 30 30 C 1.52996 * 109.46036 * 181.38764 * 28 27 26 31 31 H 1.09005 * 109.47253 * 300.00760 * 1 2 3 32 32 H 1.09000 * 109.47117 * 60.00282 * 1 2 3 33 33 H 1.08995 * 109.47277 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.73734 * 175.11110 * 5 3 2 35 35 H 1.09001 * 109.66579 * 54.54312 * 5 3 2 36 36 H 0.96994 * 119.99499 * 5.09558 * 11 9 7 37 37 H 1.08002 * 120.25570 * 0.04644 * 13 12 11 38 38 H 1.07995 * 120.66403 * 180.02562 * 14 13 12 39 39 H 1.07999 * 120.43619 * 180.26380 * 15 14 13 40 40 H 0.97005 * 120.00051 * 180.02562 * 20 19 17 41 41 H 1.08996 * 109.58523 * 173.64270 * 26 6 5 42 42 H 1.08994 * 109.59142 * 293.92983 * 26 6 5 43 43 H 1.08996 * 109.50154 * 65.31657 * 27 26 6 44 44 H 1.09006 * 109.49293 * 185.41285 * 27 26 6 45 45 H 1.09001 * 109.47165 * 60.00333 * 30 28 27 46 46 H 1.08997 * 109.47308 * 180.02562 * 30 28 27 47 47 H 1.09001 * 109.47063 * 300.00306 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3448 2.0000 0.5126 5 6 2.2240 1.7760 -1.4467 6 7 3.2200 0.9012 -2.0803 7 6 2.9476 0.2821 -3.2461 8 8 1.8223 0.3105 -3.6997 9 6 4.0308 -0.4386 -3.9798 10 8 5.1779 -0.3693 -3.5897 11 7 3.7342 -1.1659 -5.0751 12 6 4.7227 -1.9221 -5.6965 13 6 4.3812 -2.7663 -6.7560 14 6 5.3678 -3.5197 -7.3738 15 6 6.6703 -3.4066 -6.9214 16 6 6.9493 -2.5433 -5.8474 17 6 8.2744 -2.4209 -5.3709 18 1 9.0678 -2.9929 -5.8287 19 6 8.5583 -1.5581 -4.3052 20 7 7.5979 -0.8653 -3.7513 21 14 10.3096 -1.3958 -3.6760 22 1 10.5450 -2.3959 -2.6038 23 1 11.2604 -1.6332 -4.7916 24 1 10.5157 -0.0293 -3.1323 25 7 5.9706 -1.8333 -5.2776 26 6 4.5207 0.7189 -1.4220 27 6 4.2833 0.2645 0.0217 28 6 3.3594 1.2640 0.7214 29 1 3.8132 2.2547 0.6998 30 6 3.1477 0.8320 2.1738 31 1 -0.3634 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.5861 2.8041 -1.4497 35 1 1.2836 1.7160 -1.9946 36 1 2.8315 -1.1619 -5.4300 37 1 3.3567 -2.8314 -7.0915 38 1 5.1250 -4.1780 -8.1947 39 1 7.4618 -3.9769 -7.3846 40 1 7.7946 -0.2673 -3.0132 41 1 5.0962 -0.0389 -1.9535 42 1 5.0674 1.6618 -1.4252 43 1 3.8188 -0.7216 0.0210 44 1 5.2357 0.2182 0.5498 45 1 4.1083 0.8035 2.6881 46 1 2.4893 1.5434 2.6722 47 1 2.6943 -0.1590 2.1956 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890197696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:13 Heat of formation + Delta-G solvation = -57.092903 kcal Electronic energy + Delta-G solvation = -31927.508902 eV Core-core repulsion = 27690.353294 eV Total energy + Delta-G solvation = -4237.155609 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.02750 -40.68045 -39.66811 -38.83842 -37.37994 -36.07798 -35.03774 -34.51995 -32.26258 -31.56262 -31.06891 -29.43283 -27.71955 -27.49877 -26.05865 -24.29217 -24.07251 -23.34080 -22.50542 -21.32880 -20.48661 -19.57542 -18.47892 -18.18447 -17.67198 -17.21721 -17.00509 -16.56371 -16.44144 -16.28482 -16.17307 -15.95911 -15.49866 -15.08909 -15.05100 -14.75023 -14.65499 -14.36074 -14.22109 -13.90839 -13.84682 -13.75370 -13.39499 -12.86651 -12.77229 -12.73152 -12.57599 -12.55233 -12.42394 -12.29054 -12.26870 -11.84626 -11.74604 -11.64372 -11.54855 -11.35494 -10.89357 -10.70575 -10.18956 -9.92193 -9.65758 -9.11461 -8.90487 -8.06899 -6.40756 0.37144 1.04364 1.28106 1.36173 1.44965 1.55291 1.58007 2.29751 2.35102 2.50640 2.88484 2.99864 3.35068 3.72684 3.73402 3.91331 4.02198 4.03092 4.32941 4.33124 4.37482 4.44857 4.52132 4.55856 4.59647 4.66654 4.74087 4.80164 4.82982 4.85343 4.89273 4.94451 4.95760 5.05689 5.11542 5.13823 5.29908 5.33774 5.43052 5.51587 5.64565 5.77788 5.90655 6.01156 6.13623 6.27337 6.31682 6.50433 6.73240 6.84528 7.05555 7.29946 8.25716 8.57738 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011734 B = 0.003821 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.711148 B = 7325.348881 C = 9191.691858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.397 6.397 3 C 0.081 3.919 4 H 0.102 0.898 5 C 0.080 3.920 6 N -0.565 5.565 7 C 0.514 3.486 8 O -0.553 6.553 9 C 0.460 3.540 10 O -0.403 6.403 11 N -0.633 5.633 12 C 0.348 3.652 13 C -0.345 4.345 14 C -0.033 4.033 15 C -0.322 4.322 16 C 0.238 3.762 17 C -0.460 4.460 18 H 0.086 0.914 19 C 0.017 3.983 20 N -0.691 5.691 21 Si 0.974 3.026 22 H -0.267 1.267 23 H -0.261 1.261 24 H -0.270 1.270 25 N -0.503 5.503 26 C 0.069 3.931 27 C -0.117 4.117 28 C -0.086 4.086 29 H 0.103 0.897 30 C -0.137 4.137 31 H 0.062 0.938 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.422 0.578 37 H 0.127 0.873 38 H 0.138 0.862 39 H 0.108 0.892 40 H 0.275 0.725 41 H 0.116 0.884 42 H 0.079 0.921 43 H 0.047 0.953 44 H 0.084 0.916 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.378 7.892 11.958 17.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.316 6.316 3 C 0.022 3.978 4 H 0.119 0.881 5 C -0.042 4.042 6 N -0.297 5.297 7 C 0.297 3.703 8 O -0.432 6.432 9 C 0.239 3.761 10 O -0.269 6.269 11 N -0.282 5.282 12 C 0.110 3.890 13 C -0.370 4.370 14 C -0.057 4.057 15 C -0.345 4.345 16 C 0.113 3.887 17 C -0.491 4.491 18 H 0.104 0.896 19 C -0.209 4.209 20 N -0.310 5.310 21 Si 0.795 3.205 22 H -0.192 1.192 23 H -0.184 1.184 24 H -0.194 1.194 25 N -0.223 5.223 26 C -0.052 4.052 27 C -0.155 4.155 28 C -0.105 4.105 29 H 0.121 0.879 30 C -0.195 4.195 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.260 0.740 37 H 0.145 0.855 38 H 0.156 0.844 39 H 0.126 0.874 40 H 0.086 0.914 41 H 0.133 0.867 42 H 0.097 0.903 43 H 0.066 0.934 44 H 0.103 0.897 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.866 8.556 12.957 18.397 hybrid contribution -0.236 -0.518 -0.980 1.134 sum -10.102 8.038 11.977 17.610 Atomic orbital electron populations 1.22881 0.80327 1.03083 1.00537 1.87969 1.20592 1.28169 1.94857 1.22741 0.96022 0.85468 0.93532 0.88082 1.22609 0.92941 0.93986 0.94660 1.47795 1.17367 1.44764 1.19781 1.20115 0.87661 0.80032 0.82524 1.90645 1.22514 1.61674 1.68371 1.20761 0.89996 0.82184 0.83142 1.90947 1.19404 1.55333 1.61181 1.43034 1.12787 1.44822 1.27591 1.18984 0.89053 0.90293 0.90646 1.20941 1.00542 1.09855 1.05678 1.21027 0.91962 0.95698 0.97026 1.21849 0.97375 1.09816 1.05498 1.18841 0.92916 0.88036 0.88932 1.19908 0.92883 1.21974 1.14312 0.89582 1.26932 1.02606 0.94833 0.96515 1.70441 1.33100 1.13380 1.14091 0.85335 0.77814 0.78337 0.78982 1.19175 1.18448 1.19423 1.68595 0.97125 1.26069 1.30522 1.22844 0.83301 1.04690 0.94397 1.21824 1.00370 0.99136 0.94155 1.21310 0.93316 1.00356 0.95472 0.87929 1.21703 1.02160 1.01475 0.94135 0.91912 0.94391 0.89963 0.87725 0.89717 0.73977 0.85523 0.84410 0.87396 0.91404 0.86682 0.90267 0.93389 0.89703 0.91924 0.91274 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.83 113.37 1.23 1.74 16 2 O -0.40 -9.57 8.94 -148.98 -1.33 -10.91 16 3 C 0.08 1.52 2.37 30.82 0.07 1.59 16 4 H 0.10 1.29 7.79 -2.39 -0.02 1.27 16 5 C 0.08 1.80 6.12 86.51 0.53 2.33 16 6 N -0.56 -17.24 2.91 -819.74 -2.38 -19.62 16 7 C 0.51 19.11 7.73 87.24 0.67 19.78 16 8 O -0.55 -21.21 15.93 -3.29 -0.05 -21.26 16 9 C 0.46 19.99 7.70 87.24 0.67 20.66 16 10 O -0.40 -19.53 8.95 -3.28 -0.03 -19.56 16 11 N -0.63 -27.29 5.37 -309.70 -1.66 -28.95 16 12 C 0.35 17.30 7.42 133.30 0.99 18.29 16 13 C -0.34 -15.27 9.96 22.72 0.23 -15.04 16 14 C -0.03 -1.45 10.15 22.39 0.23 -1.22 16 15 C -0.32 -16.09 9.83 22.87 0.22 -15.87 16 16 C 0.24 13.45 6.55 40.20 0.26 13.71 16 17 C -0.46 -25.31 9.14 23.47 0.21 -25.09 16 18 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 19 C 0.02 0.88 5.50 85.29 0.47 1.35 16 20 N -0.69 -36.97 8.99 21.84 0.20 -36.77 16 21 Si 0.97 38.59 29.56 68.60 2.03 40.62 16 22 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 23 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 24 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 25 N -0.50 -28.39 5.74 -186.43 -1.07 -29.46 16 26 C 0.07 2.06 5.98 86.36 0.52 2.57 16 27 C -0.12 -2.88 5.22 30.67 0.16 -2.72 16 28 C -0.09 -1.54 2.51 -10.77 -0.03 -1.56 16 29 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 30 C -0.14 -2.12 9.06 71.98 0.65 -1.47 16 31 H 0.06 0.81 8.09 -2.38 -0.02 0.79 16 32 H 0.04 0.71 7.84 -2.39 -0.02 0.69 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 2.10 6.70 -2.39 -0.02 2.08 16 36 H 0.42 15.61 8.18 -92.71 -0.76 14.85 16 37 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 38 H 0.14 4.84 8.06 -2.91 -0.02 4.82 16 39 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 40 H 0.27 13.50 8.29 -92.70 -0.77 12.73 16 41 H 0.12 4.49 4.31 -47.89 -0.21 4.29 16 42 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.05 1.44 7.61 -2.39 -0.02 1.42 16 44 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 45 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.05 0.88 7.72 -2.39 -0.02 0.86 16 Total: -1.00 -69.99 379.30 2.84 -67.16 By element: Atomic # 1 Polarization: 39.68 SS G_CDS: 0.05 Total: 39.73 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 7.09 Total: 19.04 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -4.92 Total: -114.81 kcal Atomic # 8 Polarization: -50.31 SS G_CDS: -1.41 Total: -51.73 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.62 kcal Total: -69.99 2.84 -67.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890197696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.063 kcal (2) G-P(sol) polarization free energy of solvation -69.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds