Wall clock time and date at job start Wed Apr 1 2020 04:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42893 * 113.99727 * 2 1 4 4 H 1.09003 * 109.46201 * 330.00140 * 3 2 1 5 5 C 1.53034 * 109.45918 * 89.97569 * 3 2 1 6 6 C 1.53203 * 109.31358 * 181.36844 * 5 3 2 7 7 N 1.46921 * 108.77299 * 305.36461 * 6 5 3 8 8 C 1.34777 * 120.63178 * 233.57997 * 7 6 5 9 9 O 1.21357 * 120.00151 * 171.26043 * 8 7 6 10 10 C 1.49369 * 119.99654 * 351.26495 * 8 7 6 11 11 O 1.21351 * 120.00110 * 353.55795 * 10 8 7 12 12 N 1.34777 * 119.99768 * 173.55540 * 10 8 7 13 13 C 1.39108 * 120.00249 * 185.08803 * 12 10 8 14 14 C 1.39710 * 119.58216 * 174.27552 * 13 12 10 15 15 C 1.38652 * 119.49386 * 179.72606 * 14 13 12 16 16 C 1.38348 * 118.66810 * 0.53834 * 15 14 13 17 17 C 1.40592 * 119.14085 * 359.72578 * 16 15 14 18 18 C 1.41329 * 119.78625 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00351 * 359.97438 * 18 17 16 20 20 C 1.40032 * 119.99711 * 179.97438 * 18 17 16 21 21 N 1.30743 * 120.00271 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99888 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47014 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46888 * 119.99999 * 22 20 18 25 25 H 1.48496 * 109.47345 * 239.99915 * 22 20 18 26 26 N 1.31942 * 119.57500 * 354.54453 * 13 12 10 27 27 C 1.46925 * 118.73774 * 53.61362 * 7 6 5 28 28 H 1.09004 * 109.58518 * 186.46016 * 27 7 6 29 29 C 1.52997 * 109.59205 * 66.17333 * 27 7 6 30 30 C 1.53045 * 109.44899 * 210.03828 * 3 2 1 31 31 H 1.09007 * 109.46850 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47301 * 299.99584 * 1 2 3 33 33 H 1.08995 * 109.47790 * 59.99763 * 1 2 3 34 34 H 1.08996 * 109.50306 * 301.31956 * 5 3 2 35 35 H 1.09005 * 109.49856 * 61.38569 * 5 3 2 36 36 H 1.08997 * 109.58268 * 65.15658 * 6 5 3 37 37 H 1.08998 * 109.58618 * 185.57966 * 6 5 3 38 38 H 0.97001 * 120.00038 * 5.08553 * 12 10 8 39 39 H 1.08001 * 120.24931 * 359.97438 * 14 13 12 40 40 H 1.07995 * 120.66221 * 180.24210 * 15 14 13 41 41 H 1.08000 * 120.42774 * 179.75007 * 16 15 14 42 42 H 0.96999 * 120.00267 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.46818 * 59.99840 * 29 27 7 44 44 H 1.09005 * 109.47186 * 179.97438 * 29 27 7 45 45 H 1.08996 * 109.46921 * 300.00290 * 29 27 7 46 46 H 1.09003 * 109.49390 * 298.57351 * 30 3 2 47 47 H 1.08995 * 109.49671 * 58.66984 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3447 1.9992 -0.5139 5 6 2.2169 1.7714 1.4429 6 6 2.8083 3.1847 1.4392 7 7 4.0309 3.1835 0.6244 8 6 5.1925 3.6450 1.1284 9 8 6.2251 3.4947 0.5089 10 6 5.2089 4.3414 2.4498 11 8 4.1654 4.5956 3.0146 12 7 6.3827 4.6872 3.0147 13 6 6.4043 5.2394 4.2913 14 6 7.6296 5.4834 4.9166 15 6 7.6491 6.0391 6.1867 16 6 6.4448 6.3264 6.8041 17 6 5.2448 6.0523 6.1248 18 6 4.0068 6.3408 6.7425 19 1 3.9846 6.7700 7.7332 20 6 2.8088 6.0702 6.0697 21 7 2.8356 5.5501 4.8704 22 14 1.1724 6.4508 6.8863 23 1 1.4138 7.0294 8.2325 24 1 0.4201 7.4259 6.0566 25 1 0.3825 5.2003 7.0188 26 7 5.2672 5.5211 4.8983 27 6 3.9629 2.6703 -0.7507 28 1 4.9657 2.6312 -1.1761 29 6 3.0817 3.5899 -1.5984 30 6 3.3587 1.2629 -0.7224 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.2594 1.7792 1.9636 35 1 2.9014 1.0915 1.9503 36 1 2.0863 3.8817 1.0138 37 1 3.0495 3.4826 2.4595 38 1 7.2125 4.5511 2.5311 39 1 8.5546 5.2447 4.4127 40 1 8.5856 6.2393 6.6860 41 1 6.4268 6.7559 7.7948 42 1 2.0058 5.3623 4.4046 43 1 3.5065 4.5936 -1.6069 44 1 3.0330 3.2076 -2.6181 45 1 2.0782 3.6236 -1.1743 46 1 4.0329 0.5881 -0.1948 47 1 3.2137 0.9086 -1.7429 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890265716.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:11 Heat of formation + Delta-G solvation = -56.260030 kcal Electronic energy + Delta-G solvation = -31744.984091 eV Core-core repulsion = 27507.864599 eV Total energy + Delta-G solvation = -4237.119493 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.13134 -40.71737 -39.68130 -38.92813 -37.76596 -36.10770 -34.94382 -33.50933 -32.83868 -32.25795 -31.07430 -29.11221 -27.66959 -27.26208 -26.37657 -24.88094 -23.93686 -23.31826 -22.77583 -21.33965 -20.16278 -19.50637 -18.53468 -18.19001 -17.96846 -17.42692 -17.05944 -16.45917 -16.30039 -16.23335 -16.00500 -15.87643 -15.60207 -15.49388 -15.11409 -14.88033 -14.70593 -14.45390 -14.21040 -13.90424 -13.76105 -13.71286 -13.31912 -12.99786 -12.89065 -12.74336 -12.66346 -12.54749 -12.47145 -12.31624 -12.29097 -12.12110 -11.97061 -11.73374 -11.56316 -11.32157 -10.90969 -10.65212 -10.15805 -9.92944 -9.88772 -9.12954 -8.91170 -8.08087 -6.41039 0.33222 1.02355 1.26725 1.30884 1.44277 1.54498 1.56931 2.28678 2.30709 2.44102 2.76509 2.98907 3.30977 3.62730 3.78370 3.92695 4.02252 4.04031 4.09250 4.29273 4.32788 4.36056 4.40355 4.52984 4.54111 4.63268 4.66071 4.79439 4.82579 4.85640 4.86668 4.93160 4.94153 4.95042 5.01169 5.09151 5.09715 5.29660 5.32905 5.41857 5.64356 5.76671 5.90526 5.97714 6.11606 6.24470 6.27706 6.48544 6.70535 6.81637 7.05225 7.28077 8.24878 8.56604 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010727 B = 0.003828 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.565346 B = 7313.369066 C = 9293.209045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.404 6.404 3 C 0.092 3.908 4 H 0.084 0.916 5 C -0.148 4.148 6 C 0.074 3.926 7 N -0.572 5.572 8 C 0.516 3.484 9 O -0.547 6.547 10 C 0.460 3.540 11 O -0.403 6.403 12 N -0.632 5.632 13 C 0.348 3.652 14 C -0.344 4.344 15 C -0.033 4.033 16 C -0.322 4.322 17 C 0.238 3.762 18 C -0.459 4.459 19 H 0.085 0.915 20 C 0.018 3.982 21 N -0.690 5.690 22 Si 0.973 3.027 23 H -0.259 1.259 24 H -0.270 1.270 25 H -0.269 1.269 26 N -0.503 5.503 27 C 0.133 3.867 28 H 0.099 0.901 29 C -0.158 4.158 30 C -0.117 4.117 31 H 0.096 0.904 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.123 0.877 38 H 0.423 0.577 39 H 0.128 0.872 40 H 0.138 0.862 41 H 0.107 0.893 42 H 0.274 0.726 43 H 0.050 0.950 44 H 0.098 0.902 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.514 -7.624 -13.155 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.324 6.324 3 C 0.034 3.966 4 H 0.102 0.898 5 C -0.186 4.186 6 C -0.047 4.047 7 N -0.305 5.305 8 C 0.298 3.702 9 O -0.426 6.426 10 C 0.239 3.761 11 O -0.268 6.268 12 N -0.281 5.281 13 C 0.110 3.890 14 C -0.369 4.369 15 C -0.057 4.057 16 C -0.345 4.345 17 C 0.113 3.887 18 C -0.490 4.490 19 H 0.103 0.897 20 C -0.208 4.208 21 N -0.309 5.309 22 Si 0.794 3.206 23 H -0.183 1.183 24 H -0.195 1.195 25 H -0.194 1.194 26 N -0.223 5.223 27 C 0.031 3.969 28 H 0.117 0.883 29 C -0.215 4.215 30 C -0.155 4.155 31 H 0.114 0.886 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.140 0.860 38 H 0.261 0.739 39 H 0.145 0.855 40 H 0.156 0.844 41 H 0.125 0.875 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.116 0.884 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.622 -7.971 -13.719 17.193 hybrid contribution 0.567 0.508 0.815 1.116 sum -6.055 -7.462 -12.903 16.089 Atomic orbital electron populations 1.22979 0.79705 1.03753 1.00822 1.87885 1.21278 1.28106 1.95116 1.22175 0.95090 0.84794 0.94500 0.89843 1.22375 1.01837 0.96018 0.98418 1.22754 0.85347 0.96848 0.99756 1.48133 1.08649 1.59110 1.14634 1.20169 0.84238 0.79564 0.86180 1.90670 1.32176 1.58007 1.61763 1.20740 0.85628 0.82732 0.86983 1.90944 1.29262 1.46082 1.60532 1.43027 1.09958 1.60255 1.14897 1.18976 0.91644 0.92830 0.85530 1.20948 0.95768 1.20335 0.99857 1.21030 0.97451 0.93742 0.93512 1.21849 0.93731 1.16391 1.02530 1.18833 0.93545 0.88622 0.87704 1.19918 0.90307 1.36388 1.02382 0.89658 1.26911 1.03750 0.94529 0.95612 1.70442 1.28869 1.22320 1.09298 0.85301 0.77284 0.78646 0.79366 1.18296 1.19503 1.19386 1.68595 1.23979 1.19016 1.10691 1.21484 1.01837 0.93281 0.80278 0.88271 1.22164 0.99728 0.99033 1.00619 1.21915 0.95376 0.95475 1.02703 0.88589 0.93846 0.92526 0.89692 0.92826 0.90088 0.86002 0.73859 0.85452 0.84442 0.87458 0.91455 0.93036 0.88373 0.91395 0.92223 0.87573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.82 113.37 1.23 1.57 16 2 O -0.40 -8.60 10.35 -148.98 -1.54 -10.14 16 3 C 0.09 1.84 2.36 30.62 0.07 1.92 16 4 H 0.08 1.37 6.13 -2.39 -0.01 1.36 16 5 C -0.15 -3.65 5.69 30.67 0.17 -3.48 16 6 C 0.07 2.13 5.57 86.37 0.48 2.61 16 7 N -0.57 -16.64 2.68 -796.69 -2.13 -18.78 16 8 C 0.52 18.24 7.73 87.24 0.67 18.92 16 9 O -0.55 -20.07 15.93 -3.27 -0.05 -20.12 16 10 C 0.46 19.21 7.70 87.24 0.67 19.88 16 11 O -0.40 -18.86 8.94 -3.25 -0.03 -18.89 16 12 N -0.63 -26.31 5.37 -309.71 -1.66 -27.97 16 13 C 0.35 16.89 7.42 133.30 0.99 17.88 16 14 C -0.34 -14.89 9.96 22.72 0.23 -14.67 16 15 C -0.03 -1.43 10.15 22.40 0.23 -1.21 16 16 C -0.32 -15.86 9.83 22.87 0.22 -15.63 16 17 C 0.24 13.27 6.55 40.20 0.26 13.53 16 18 C -0.46 -24.94 9.14 23.47 0.21 -24.73 16 19 H 0.09 4.38 7.85 -2.91 -0.02 4.35 16 20 C 0.02 0.91 5.50 85.29 0.47 1.37 16 21 N -0.69 -36.22 8.99 21.84 0.20 -36.02 16 22 Si 0.97 38.10 29.56 68.60 2.03 40.12 16 23 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 24 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 25 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 26 N -0.50 -27.84 5.73 -186.43 -1.07 -28.91 16 27 C 0.13 2.95 3.22 44.97 0.14 3.10 16 28 H 0.10 2.38 7.01 -2.38 -0.02 2.36 16 29 C -0.16 -2.69 9.03 71.98 0.65 -2.04 16 30 C -0.12 -2.30 5.20 30.67 0.16 -2.14 16 31 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.04 0.63 7.84 -2.38 -0.02 0.61 16 33 H 0.06 0.65 8.08 -2.39 -0.02 0.63 16 34 H 0.08 1.94 7.84 -2.39 -0.02 1.92 16 35 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.08 2.09 7.50 -2.39 -0.02 2.08 16 37 H 0.12 4.55 4.31 -47.99 -0.21 4.34 16 38 H 0.42 14.98 8.18 -92.71 -0.76 14.22 16 39 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 40 H 0.14 4.75 8.06 -2.91 -0.02 4.73 16 41 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 42 H 0.27 13.17 8.29 -92.71 -0.77 12.40 16 43 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 45 H 0.07 1.08 5.72 -2.39 -0.01 1.07 16 46 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -67.43 376.52 2.66 -64.77 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: 0.06 Total: 39.05 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 6.87 Total: 16.88 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -4.67 Total: -111.67 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -1.62 Total: -49.15 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.12 kcal Total: -67.43 2.66 -64.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890265716.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.513 kcal (2) G-P(sol) polarization free energy of solvation -67.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds