Wall clock time and date at job start Wed Apr 1 2020 05:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.89039 * 2 1 4 4 C 1.54910 * 111.00376 * 236.11681 * 2 1 3 5 5 N 1.47426 * 104.83373 * 204.92009 * 4 2 1 6 6 C 1.34775 * 125.64772 * 204.09710 * 5 4 2 7 7 O 1.21278 * 120.00199 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99700 * 179.97438 * 6 5 4 9 9 O 1.42903 * 109.46945 * 179.97438 * 8 6 5 10 10 C 1.35909 * 117.00334 * 179.97438 * 9 8 6 11 11 C 1.38857 * 119.97936 * 0.02562 * 10 9 8 12 12 C 1.38241 * 120.23659 * 180.02562 * 11 10 9 13 13 C 1.38013 * 120.20625 * 359.97438 * 12 11 10 14 14 C 1.39551 * 119.96499 * 359.97438 * 13 12 11 15 15 C 1.47869 * 120.11766 * 180.02562 * 14 13 12 16 16 N 1.34777 * 119.99621 * 0.02562 * 15 14 13 17 17 O 1.21553 * 120.00090 * 180.02562 * 15 14 13 18 18 C 1.38448 * 119.98996 * 180.25813 * 10 9 8 19 19 C 1.47019 * 108.70168 * 24.35702 * 5 4 2 20 20 C 1.54333 * 107.26847 * 358.58436 * 19 5 4 21 21 H 1.09005 * 110.51531 * 96.45218 * 20 19 5 22 22 N 1.46498 * 110.85354 * 219.67450 * 20 19 5 23 23 C 1.36943 * 119.99673 * 268.69019 * 22 20 19 24 24 H 1.07992 * 119.99929 * 0.02562 * 23 22 20 25 25 C 1.38816 * 119.99472 * 179.97438 * 23 22 20 26 26 N 1.31619 * 120.00162 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99554 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47152 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.46958 * 120.00571 * 27 25 23 30 30 H 1.48500 * 109.47073 * 240.00068 * 27 25 23 31 31 H 1.08998 * 109.47101 * 182.42856 * 1 2 3 32 32 H 1.08998 * 109.46880 * 302.42883 * 1 2 3 33 33 H 1.08996 * 109.47021 * 62.42562 * 1 2 3 34 34 H 1.08994 * 110.36711 * 86.08151 * 4 2 1 35 35 H 1.08996 * 110.46434 * 323.80486 * 4 2 1 36 36 H 1.08996 * 109.47159 * 59.99922 * 8 6 5 37 37 H 1.09001 * 109.47115 * 299.99751 * 8 6 5 38 38 H 1.08001 * 119.88392 * 0.02562 * 11 10 9 39 39 H 1.08000 * 119.89979 * 179.97438 * 12 11 10 40 40 H 1.08003 * 120.01420 * 179.97438 * 13 12 11 41 41 H 0.97001 * 120.00485 * 0.02562 * 16 15 14 42 42 H 0.97005 * 119.99790 * 179.72355 * 16 15 14 43 43 H 1.08002 * 120.10114 * 0.02562 * 18 10 9 44 44 H 1.08999 * 109.88283 * 118.13272 * 19 5 4 45 45 H 1.09004 * 109.88315 * 239.29482 * 19 5 4 46 46 H 0.96999 * 119.99988 * 88.69741 * 22 20 19 47 47 H 0.97006 * 119.99600 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8062 -1.2006 5 7 3.4271 -1.2429 -0.7737 6 6 4.4476 -1.5611 -1.5946 7 8 4.3006 -1.4998 -2.7968 8 6 5.7714 -1.9932 -1.0183 9 8 6.6844 -2.2746 -2.0811 10 6 7.9335 -2.6796 -1.7305 11 6 8.2719 -2.8036 -0.3895 12 6 9.5411 -3.2145 -0.0270 13 6 10.4802 -3.5048 -0.9958 14 6 10.1489 -3.3841 -2.3460 15 6 11.1522 -3.6948 -3.3868 16 7 12.3891 -4.0959 -3.0321 17 8 10.8615 -3.5885 -4.5623 18 6 8.8694 -2.9636 -2.7104 19 6 3.4657 -1.2798 0.6955 20 6 2.0861 -0.8084 1.2020 21 1 1.4467 -1.6637 1.4204 22 7 2.2286 0.0486 2.3815 23 6 2.1999 -0.5017 3.6352 24 1 2.0725 -1.5675 3.7542 25 6 2.3354 0.3104 4.7528 26 7 2.4911 1.6092 4.6076 27 14 2.2969 -0.4404 6.4629 28 1 2.1127 -1.9099 6.3543 29 1 3.5767 -0.1524 7.1589 30 1 1.1712 0.1443 7.2349 31 1 -0.3633 -1.0267 0.0435 32 1 -0.3633 0.5511 0.8674 33 1 -0.3633 0.4757 -0.9109 34 1 2.1560 -0.1713 -2.0837 35 1 1.4525 -1.6699 -1.4049 36 1 5.6297 -2.8896 -0.4146 37 1 6.1741 -1.1950 -0.3947 38 1 7.5410 -2.5782 0.3730 39 1 9.7986 -3.3087 1.0176 40 1 11.4709 -3.8252 -0.7091 41 1 12.6210 -4.1811 -2.0941 42 1 13.0461 -4.3036 -3.7149 43 1 8.6087 -2.8635 -3.7537 44 1 3.6600 -2.2969 1.0358 45 1 4.2424 -0.6091 1.0629 46 1 2.3433 1.0059 2.2745 47 1 2.5855 2.1767 5.3887 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939799708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:28 Heat of formation + Delta-G solvation = -65.668053 kcal Electronic energy + Delta-G solvation = -29449.421188 eV Core-core repulsion = 25211.893733 eV Total energy + Delta-G solvation = -4237.527455 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.83012 -40.05471 -39.31439 -37.78887 -37.01258 -34.19497 -34.16880 -32.70006 -31.54252 -30.86196 -30.51672 -28.71408 -27.63041 -25.88669 -24.45573 -24.00852 -22.76454 -21.75101 -20.93097 -20.06783 -19.25665 -19.01330 -17.73209 -17.27284 -16.91963 -16.81598 -16.57469 -16.34552 -15.81981 -15.60336 -15.08569 -14.82995 -14.60594 -14.48211 -14.08417 -13.99405 -13.67556 -13.35417 -13.31811 -13.00824 -12.85869 -12.63238 -12.37639 -12.27064 -12.19044 -11.62808 -11.42592 -11.34216 -11.23741 -11.09615 -10.84740 -10.68911 -10.45286 -10.32421 -10.12609 -10.08576 -9.90278 -9.74602 -9.39776 -9.10971 -8.59611 -8.49293 -7.20420 -5.94940 -3.26411 0.44997 1.05046 2.35097 2.51302 2.60064 3.07151 3.31463 3.37722 3.40126 3.50642 3.52225 4.31547 4.35417 4.43448 4.53287 4.60833 4.70726 4.84041 4.88004 4.93580 5.01658 5.05285 5.14216 5.15160 5.46938 5.52347 5.57102 5.64624 5.75213 5.80852 5.82732 5.90963 5.95004 5.98695 6.09648 6.13242 6.18375 6.25645 6.37046 6.38030 6.41987 6.53705 6.75202 6.89570 7.05045 7.53440 7.59652 7.84663 8.16790 8.22360 9.34432 9.87428 10.22237 11.26710 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011738 B = 0.002235 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.830309 B =12523.263002 C =14629.687009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.084 0.916 4 C 0.116 3.884 5 N -0.610 5.610 6 C 0.530 3.470 7 O -0.530 6.530 8 C 0.045 3.955 9 O -0.287 6.287 10 C 0.128 3.872 11 C -0.182 4.182 12 C -0.084 4.084 13 C -0.127 4.127 14 C -0.104 4.104 15 C 0.566 3.434 16 N -0.850 5.850 17 O -0.535 6.535 18 C -0.089 4.089 19 C 0.065 3.935 20 C 0.178 3.822 21 H 0.070 0.930 22 N -0.710 5.710 23 C -0.251 4.251 24 H 0.073 0.927 25 C -0.007 4.007 26 N -0.927 5.927 27 Si 0.907 3.093 28 H -0.279 1.279 29 H -0.291 1.291 30 H -0.290 1.290 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.128 0.872 41 H 0.402 0.598 42 H 0.405 0.595 43 H 0.146 0.854 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.387 0.613 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.817 -10.205 -9.034 19.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.103 0.897 4 C -0.006 4.006 5 N -0.345 5.345 6 C 0.316 3.684 7 O -0.406 6.406 8 C -0.034 4.034 9 O -0.199 6.199 10 C 0.082 3.918 11 C -0.201 4.201 12 C -0.102 4.102 13 C -0.146 4.146 14 C -0.107 4.107 15 C 0.351 3.649 16 N -0.415 5.415 17 O -0.412 6.412 18 C -0.108 4.108 19 C -0.061 4.061 20 C 0.065 3.935 21 H 0.088 0.912 22 N -0.350 5.350 23 C -0.381 4.381 24 H 0.091 0.909 25 C -0.204 4.204 26 N -0.574 5.574 27 Si 0.738 3.262 28 H -0.204 1.204 29 H -0.218 1.218 30 H -0.217 1.217 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.145 0.855 41 H 0.231 0.769 42 H 0.237 0.763 43 H 0.164 0.836 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.222 0.778 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.339 -10.123 -10.438 19.732 hybrid contribution 0.584 -0.177 1.673 1.781 sum 13.923 -10.300 -8.765 19.410 Atomic orbital electron populations 1.21595 0.93695 1.01887 1.01854 1.22668 0.96484 0.99824 0.94480 0.89744 1.22298 0.82036 0.98297 0.97993 1.48395 1.11946 1.66018 1.08123 1.19516 0.84175 0.78294 0.86383 1.90732 1.82684 1.52905 1.14292 1.22511 0.88620 1.02615 0.89614 1.86169 1.19084 1.81125 1.33490 1.18904 0.84874 0.95248 0.92784 1.21598 0.98938 1.04597 0.94987 1.20911 0.92305 0.97116 0.99857 1.21146 0.99877 1.02007 0.91581 1.19562 0.94078 1.03806 0.93253 1.18215 0.82263 0.76152 0.88237 1.43727 1.13928 1.71434 1.12385 1.90845 1.79374 1.52139 1.18811 1.20466 0.90574 0.99673 1.00128 1.23487 1.04026 1.01347 0.77223 1.21240 0.91354 0.93924 0.86949 0.91166 1.42373 1.86229 1.06258 1.00106 1.19284 1.43079 0.92632 0.83143 0.90873 1.24780 1.02159 0.95437 0.98035 1.69669 1.55763 1.02876 1.29133 0.86129 0.77293 0.78216 0.84561 1.20447 1.21773 1.21731 0.92753 0.91343 0.93127 0.90742 0.91383 0.88773 0.88565 0.84490 0.84736 0.85466 0.76866 0.76333 0.83586 0.92010 0.90676 0.77815 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.30 37.16 0.35 -1.41 16 2 C -0.11 -1.68 3.27 -88.47 -0.29 -1.97 16 3 H 0.08 1.32 8.01 -51.93 -0.42 0.91 16 4 C 0.12 1.63 6.37 -2.53 -0.02 1.62 16 5 N -0.61 -9.05 3.33 -170.52 -0.57 -9.62 16 6 C 0.53 8.34 7.93 -10.98 -0.09 8.26 16 7 O -0.53 -10.26 16.76 -14.35 -0.24 -10.50 16 8 C 0.04 0.56 4.41 36.01 0.16 0.72 16 9 O -0.29 -4.09 9.67 -39.36 -0.38 -4.47 16 10 C 0.13 1.55 6.68 -39.28 -0.26 1.28 16 11 C -0.18 -1.76 9.03 -39.35 -0.36 -2.11 16 12 C -0.08 -0.65 10.03 -39.66 -0.40 -1.04 16 13 C -0.13 -0.92 9.54 -39.17 -0.37 -1.30 16 14 C -0.10 -1.03 5.87 -104.99 -0.62 -1.65 16 15 C 0.57 5.75 8.05 -12.32 -0.10 5.65 16 16 N -0.85 -4.56 8.82 30.53 0.27 -4.29 16 17 O -0.53 -7.71 17.18 5.32 0.09 -7.62 16 18 C -0.09 -1.08 9.53 -39.02 -0.37 -1.45 16 19 C 0.07 0.98 6.25 -3.06 -0.02 0.96 16 20 C 0.18 3.03 3.07 -66.09 -0.20 2.82 16 21 H 0.07 1.20 7.96 -51.93 -0.41 0.79 16 22 N -0.71 -15.55 5.15 -51.64 -0.27 -15.82 16 23 C -0.25 -6.20 9.96 -15.06 -0.15 -6.35 16 24 H 0.07 1.76 7.83 -52.49 -0.41 1.34 16 25 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 26 N -0.93 -25.95 13.06 55.49 0.72 -25.22 16 27 Si 0.91 20.71 29.55 -169.99 -5.02 15.69 16 28 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 29 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 30 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 31 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 1.06 8.04 -51.93 -0.42 0.65 16 35 H 0.07 0.89 8.04 -51.93 -0.42 0.47 16 36 H 0.09 0.96 7.66 -51.93 -0.40 0.56 16 37 H 0.10 1.05 7.66 -51.93 -0.40 0.65 16 38 H 0.14 1.13 6.28 -52.49 -0.33 0.80 16 39 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 40 H 0.13 0.46 6.40 -52.48 -0.34 0.13 16 41 H 0.40 0.96 6.86 -40.82 -0.28 0.68 16 42 H 0.41 1.66 8.93 -40.82 -0.36 1.29 16 43 H 0.15 1.93 7.65 -52.49 -0.40 1.53 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 1.21 8.03 -51.93 -0.42 0.79 16 46 H 0.39 9.22 7.76 -40.82 -0.32 8.90 16 47 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 395.62 15.07 5.96 5.96 Total: -1.00 -33.87 395.62 -8.83 -42.70 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.56 Total: 9.46 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -2.83 Total: 3.74 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.16 Total: -54.96 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.53 Total: -22.60 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.87 -8.83 -42.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939799708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.969 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds