Wall clock time and date at job start Wed Apr 1 2020 05:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.89039 * 2 1 4 4 C 1.54910 * 111.00376 * 236.11681 * 2 1 3 5 5 N 1.47426 * 104.83373 * 204.92009 * 4 2 1 6 6 C 1.34775 * 125.64772 * 204.09710 * 5 4 2 7 7 O 1.21278 * 120.00199 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99700 * 179.97438 * 6 5 4 9 9 O 1.42903 * 109.46945 * 179.97438 * 8 6 5 10 10 C 1.35909 * 117.00334 * 179.97438 * 9 8 6 11 11 C 1.38857 * 119.97936 * 0.02562 * 10 9 8 12 12 C 1.38241 * 120.23659 * 180.02562 * 11 10 9 13 13 C 1.38013 * 120.20625 * 359.97438 * 12 11 10 14 14 C 1.39551 * 119.96499 * 359.97438 * 13 12 11 15 15 C 1.47869 * 120.11766 * 180.02562 * 14 13 12 16 16 N 1.34777 * 119.99621 * 0.02562 * 15 14 13 17 17 O 1.21553 * 120.00090 * 180.02562 * 15 14 13 18 18 C 1.38448 * 119.98996 * 180.25813 * 10 9 8 19 19 C 1.47019 * 108.70168 * 24.35702 * 5 4 2 20 20 C 1.54333 * 107.26847 * 358.58436 * 19 5 4 21 21 H 1.09005 * 110.51531 * 96.45218 * 20 19 5 22 22 N 1.46498 * 110.85354 * 219.67450 * 20 19 5 23 23 C 1.36943 * 119.99673 * 268.69019 * 22 20 19 24 24 H 1.07992 * 119.99929 * 0.02562 * 23 22 20 25 25 C 1.38816 * 119.99472 * 179.97438 * 23 22 20 26 26 N 1.31619 * 120.00162 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99554 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47152 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.46958 * 120.00571 * 27 25 23 30 30 H 1.48500 * 109.47073 * 240.00068 * 27 25 23 31 31 H 1.08998 * 109.47101 * 182.42856 * 1 2 3 32 32 H 1.08998 * 109.46880 * 302.42883 * 1 2 3 33 33 H 1.08996 * 109.47021 * 62.42562 * 1 2 3 34 34 H 1.08994 * 110.36711 * 86.08151 * 4 2 1 35 35 H 1.08996 * 110.46434 * 323.80486 * 4 2 1 36 36 H 1.08996 * 109.47159 * 59.99922 * 8 6 5 37 37 H 1.09001 * 109.47115 * 299.99751 * 8 6 5 38 38 H 1.08001 * 119.88392 * 0.02562 * 11 10 9 39 39 H 1.08000 * 119.89979 * 179.97438 * 12 11 10 40 40 H 1.08003 * 120.01420 * 179.97438 * 13 12 11 41 41 H 0.97001 * 120.00485 * 0.02562 * 16 15 14 42 42 H 0.97005 * 119.99790 * 179.72355 * 16 15 14 43 43 H 1.08002 * 120.10114 * 0.02562 * 18 10 9 44 44 H 1.08999 * 109.88283 * 118.13272 * 19 5 4 45 45 H 1.09004 * 109.88315 * 239.29482 * 19 5 4 46 46 H 0.96999 * 119.99988 * 88.69741 * 22 20 19 47 47 H 0.97006 * 119.99600 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8062 -1.2006 5 7 3.4271 -1.2429 -0.7737 6 6 4.4476 -1.5611 -1.5946 7 8 4.3006 -1.4998 -2.7968 8 6 5.7714 -1.9932 -1.0183 9 8 6.6844 -2.2746 -2.0811 10 6 7.9335 -2.6796 -1.7305 11 6 8.2719 -2.8036 -0.3895 12 6 9.5411 -3.2145 -0.0270 13 6 10.4802 -3.5048 -0.9958 14 6 10.1489 -3.3841 -2.3460 15 6 11.1522 -3.6948 -3.3868 16 7 12.3891 -4.0959 -3.0321 17 8 10.8615 -3.5885 -4.5623 18 6 8.8694 -2.9636 -2.7104 19 6 3.4657 -1.2798 0.6955 20 6 2.0861 -0.8084 1.2020 21 1 1.4467 -1.6637 1.4204 22 7 2.2286 0.0486 2.3815 23 6 2.1999 -0.5017 3.6352 24 1 2.0725 -1.5675 3.7542 25 6 2.3354 0.3104 4.7528 26 7 2.4911 1.6092 4.6076 27 14 2.2969 -0.4404 6.4629 28 1 2.1127 -1.9099 6.3543 29 1 3.5767 -0.1524 7.1589 30 1 1.1712 0.1443 7.2349 31 1 -0.3633 -1.0267 0.0435 32 1 -0.3633 0.5511 0.8674 33 1 -0.3633 0.4757 -0.9109 34 1 2.1560 -0.1713 -2.0837 35 1 1.4525 -1.6699 -1.4049 36 1 5.6297 -2.8896 -0.4146 37 1 6.1741 -1.1950 -0.3947 38 1 7.5410 -2.5782 0.3730 39 1 9.7986 -3.3087 1.0176 40 1 11.4709 -3.8252 -0.7091 41 1 12.6210 -4.1811 -2.0941 42 1 13.0461 -4.3036 -3.7149 43 1 8.6087 -2.8635 -3.7537 44 1 3.6600 -2.2969 1.0358 45 1 4.2424 -0.6091 1.0629 46 1 2.3433 1.0059 2.2745 47 1 2.5855 2.1767 5.3887 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939799708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:27 Heat of formation + Delta-G solvation = -90.033332 kcal Electronic energy + Delta-G solvation = -29450.477746 eV Core-core repulsion = 25211.893733 eV Total energy + Delta-G solvation = -4238.584013 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.72734 -41.11455 -40.26976 -38.98489 -37.97203 -35.86088 -34.87149 -34.05897 -32.53930 -32.25616 -31.32617 -29.70219 -29.11025 -26.95390 -25.84247 -25.16658 -23.49741 -23.09441 -21.76619 -21.37939 -20.39648 -19.78559 -19.07606 -18.54482 -17.90131 -17.78540 -17.58364 -17.15353 -16.92203 -16.77789 -16.22516 -15.93118 -15.73340 -15.42001 -15.31588 -15.17156 -14.76247 -14.64463 -14.54777 -14.17289 -13.96560 -13.80305 -13.48886 -13.38570 -12.99182 -12.91544 -12.85115 -12.83245 -12.26155 -12.20761 -12.17142 -12.08869 -12.00235 -11.66633 -11.44011 -11.28544 -11.08846 -10.89307 -10.78457 -10.11741 -9.74724 -9.37933 -9.03480 -7.91322 -5.20989 -0.29029 0.32679 1.33744 1.38525 1.52321 1.54502 1.62766 1.75824 2.27712 2.57838 2.63947 2.77481 3.24393 3.40493 3.66096 3.72353 3.80888 3.82148 3.87994 3.91523 3.99036 4.05996 4.09629 4.23547 4.28996 4.37775 4.46221 4.47616 4.62266 4.67405 4.84154 4.88238 4.90894 5.08767 5.13936 5.14366 5.18999 5.21958 5.31236 5.34271 5.48729 5.55905 5.59689 5.83203 6.19554 6.28743 6.37057 6.37994 6.94854 7.23699 7.37321 8.08587 8.32206 9.31580 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011738 B = 0.002235 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.830309 B =12523.263002 C =14629.687009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 H 0.071 0.929 4 C 0.117 3.883 5 N -0.606 5.606 6 C 0.526 3.474 7 O -0.573 6.573 8 C 0.049 3.951 9 O -0.318 6.318 10 C 0.104 3.896 11 C -0.182 4.182 12 C -0.079 4.079 13 C -0.108 4.108 14 C -0.113 4.113 15 C 0.561 3.439 16 N -0.822 5.822 17 O -0.590 6.590 18 C -0.118 4.118 19 C 0.077 3.923 20 C 0.171 3.829 21 H 0.076 0.924 22 N -0.721 5.721 23 C -0.236 4.236 24 H 0.084 0.916 25 C -0.071 4.071 26 N -0.967 5.967 27 Si 0.966 3.034 28 H -0.262 1.262 29 H -0.297 1.297 30 H -0.301 1.301 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.113 0.887 38 H 0.153 0.847 39 H 0.171 0.829 40 H 0.172 0.828 41 H 0.420 0.580 42 H 0.415 0.585 43 H 0.116 0.884 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.375 0.625 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.348 -12.361 -7.209 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.125 4.125 3 H 0.089 0.911 4 C -0.005 4.005 5 N -0.341 5.341 6 C 0.314 3.686 7 O -0.453 6.453 8 C -0.029 4.029 9 O -0.232 6.232 10 C 0.059 3.941 11 C -0.200 4.200 12 C -0.096 4.096 13 C -0.126 4.126 14 C -0.117 4.117 15 C 0.348 3.652 16 N -0.387 5.387 17 O -0.472 6.472 18 C -0.138 4.138 19 C -0.048 4.048 20 C 0.061 3.939 21 H 0.094 0.906 22 N -0.359 5.359 23 C -0.367 4.367 24 H 0.102 0.898 25 C -0.263 4.263 26 N -0.618 5.618 27 Si 0.796 3.204 28 H -0.187 1.187 29 H -0.224 1.224 30 H -0.229 1.229 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.170 0.830 39 H 0.189 0.811 40 H 0.190 0.810 41 H 0.253 0.747 42 H 0.247 0.753 43 H 0.134 0.866 44 H 0.102 0.898 45 H 0.085 0.915 46 H 0.207 0.793 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 14.907 -12.347 -8.593 21.178 hybrid contribution 0.159 0.440 1.053 1.153 sum 15.065 -11.906 -7.540 20.629 Atomic orbital electron populations 1.21556 0.92399 1.02622 1.01947 1.22561 0.97503 0.98827 0.93618 0.91091 1.22341 0.82010 0.98770 0.97404 1.48413 1.12178 1.65500 1.07962 1.20099 0.85187 0.77442 0.85859 1.90710 1.83511 1.54903 1.16162 1.22561 0.86795 1.04241 0.89274 1.86114 1.20325 1.81989 1.34765 1.19039 0.84093 0.96919 0.94008 1.21859 1.00359 1.03979 0.93833 1.21387 0.91206 0.95354 1.01693 1.21618 1.01699 0.99483 0.89831 1.19655 0.93126 1.04184 0.94703 1.18378 0.83463 0.75923 0.87484 1.43504 1.12284 1.69081 1.13846 1.90821 1.80534 1.54887 1.20915 1.20428 0.92287 1.01976 0.99064 1.23205 1.02202 1.02275 0.77140 1.21436 0.92592 0.93745 0.86164 0.90615 1.42488 1.86419 1.06173 1.00820 1.19670 1.39984 0.92982 0.84112 0.89820 1.25488 1.03647 0.95836 1.01353 1.69816 1.58470 1.04142 1.29338 0.85177 0.76311 0.78254 0.80609 1.18662 1.22408 1.22861 0.91476 0.93340 0.91150 0.91058 0.89743 0.86079 0.86932 0.82981 0.81131 0.81048 0.74712 0.75275 0.86577 0.89840 0.91466 0.79262 0.94177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.30 71.98 0.67 -2.52 16 2 C -0.11 -2.98 3.27 -9.40 -0.03 -3.01 16 3 H 0.07 2.22 8.01 -2.39 -0.02 2.20 16 4 C 0.12 3.14 6.37 86.86 0.55 3.69 16 5 N -0.61 -17.25 3.33 -811.79 -2.70 -19.95 16 6 C 0.53 16.34 7.93 87.66 0.69 17.04 16 7 O -0.57 -22.67 16.76 16.01 0.27 -22.41 16 8 C 0.05 1.18 4.41 71.24 0.31 1.49 16 9 O -0.32 -9.34 9.67 -73.49 -0.71 -10.05 16 10 C 0.10 2.54 6.68 22.47 0.15 2.69 16 11 C -0.18 -3.07 9.03 22.42 0.20 -2.87 16 12 C -0.08 -0.89 10.03 22.22 0.22 -0.67 16 13 C -0.11 -1.17 9.54 22.53 0.21 -0.95 16 14 C -0.11 -2.17 5.87 -20.10 -0.12 -2.29 16 15 C 0.56 11.18 8.05 86.79 0.70 11.88 16 16 N -0.82 -6.91 8.82 -175.58 -1.55 -8.46 16 17 O -0.59 -17.92 17.18 -3.88 -0.07 -17.99 16 18 C -0.12 -3.03 9.53 22.63 0.22 -2.81 16 19 C 0.08 2.18 6.25 86.73 0.54 2.72 16 20 C 0.17 5.56 3.07 46.19 0.14 5.70 16 21 H 0.08 2.41 7.96 -2.38 -0.02 2.40 16 22 N -0.72 -31.12 5.15 -317.30 -1.64 -32.76 16 23 C -0.24 -11.40 9.96 84.03 0.84 -10.56 16 24 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 25 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 26 N -0.97 -54.88 13.06 21.65 0.28 -54.60 16 27 Si 0.97 42.24 29.55 68.60 2.03 44.26 16 28 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 29 H -0.30 -13.11 7.11 99.48 0.71 -12.40 16 30 H -0.30 -13.53 7.11 99.48 0.71 -12.83 16 31 H 0.07 1.50 8.11 -2.39 -0.02 1.49 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.99 8.04 -2.39 -0.02 1.97 16 35 H 0.08 2.03 8.04 -2.39 -0.02 2.01 16 36 H 0.12 2.19 7.66 -2.39 -0.02 2.17 16 37 H 0.11 2.29 7.66 -2.39 -0.02 2.27 16 38 H 0.15 2.02 6.28 -2.91 -0.02 2.01 16 39 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 40 H 0.17 0.25 6.40 -2.91 -0.02 0.23 16 41 H 0.42 0.35 6.86 -92.71 -0.64 -0.28 16 42 H 0.41 2.54 8.93 -92.70 -0.83 1.71 16 43 H 0.12 3.54 7.65 -2.91 -0.02 3.52 16 44 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.07 2.05 8.03 -2.38 -0.02 2.03 16 46 H 0.37 18.03 7.76 -92.71 -0.72 17.31 16 47 H 0.25 13.90 8.31 -92.70 -0.77 13.13 16 Total: -1.00 -77.71 395.62 0.54 -77.16 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -1.15 Total: 28.46 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 5.77 Total: 16.32 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -5.60 Total: -115.77 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.51 Total: -50.44 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -77.71 0.54 -77.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939799708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.870 kcal (2) G-P(sol) polarization free energy of solvation -77.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds