Wall clock time and date at job start Wed Apr 1 2020 06:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 5 5 C 1.34777 * 120.00199 * 275.00460 * 4 2 1 6 6 O 1.21553 * 119.99924 * 359.97438 * 5 4 2 7 7 C 1.47859 * 120.00021 * 180.27513 * 5 4 2 8 8 C 1.39604 * 120.11778 * 359.43996 * 7 5 4 9 9 C 1.37964 * 119.96811 * 179.74571 * 8 7 5 10 10 C 1.38289 * 120.20409 * 0.56210 * 9 8 7 11 11 C 1.38817 * 120.23870 * 359.69421 * 10 9 8 12 12 O 1.35906 * 119.98289 * 180.02562 * 11 10 9 13 13 C 1.42902 * 117.00390 * 0.02562 * 12 11 10 14 14 C 1.50697 * 109.47008 * 180.02562 * 13 12 11 15 15 N 1.34778 * 119.99773 * 180.02562 * 14 13 12 16 16 O 1.21281 * 120.00397 * 359.97438 * 14 13 12 17 17 C 1.38492 * 120.02953 * 0.02562 * 11 10 9 18 18 C 1.52995 * 109.46966 * 240.00307 * 2 1 3 19 19 C 1.53946 * 113.74028 * 158.74547 * 18 2 1 20 20 N 1.47813 * 86.03386 * 222.08002 * 19 18 2 21 21 C 1.36940 * 134.45400 * 204.64384 * 20 19 18 22 22 H 1.08003 * 119.99504 * 179.86568 * 21 20 19 23 23 C 1.38809 * 120.00589 * 359.86213 * 21 20 19 24 24 N 1.31621 * 119.99455 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00490 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46966 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46978 * 120.00289 * 25 23 21 28 28 H 1.48496 * 109.47363 * 240.00360 * 25 23 21 29 29 C 1.47579 * 91.05080 * 24.54796 * 20 19 18 30 30 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 32 32 H 1.08998 * 109.47338 * 59.99872 * 1 2 3 33 33 H 0.97001 * 120.00074 * 94.99564 * 4 2 1 34 34 H 1.08000 * 120.01613 * 0.03285 * 8 7 5 35 35 H 1.07993 * 119.90128 * 180.27685 * 9 8 7 36 36 H 1.07998 * 119.88025 * 179.72036 * 10 9 8 37 37 H 1.08995 * 109.46966 * 300.00438 * 13 12 11 38 38 H 1.09000 * 109.46514 * 60.00329 * 13 12 11 39 39 H 0.96996 * 120.00313 * 359.97438 * 15 14 13 40 40 H 0.97003 * 119.99911 * 179.97438 * 15 14 13 41 41 H 1.07997 * 120.10379 * 180.02562 * 17 11 10 42 42 H 1.09000 * 112.94494 * 290.32780 * 18 2 1 43 43 H 1.09001 * 113.77118 * 336.34210 * 19 18 2 44 44 H 1.08997 * 113.77603 * 107.73992 * 19 18 2 45 45 H 0.97004 * 119.99952 * 179.97438 * 24 23 21 46 46 H 1.09006 * 113.76945 * 221.15066 * 29 20 19 47 47 H 1.08998 * 113.87187 * 89.76979 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8583 1.1613 2.4116 7 6 2.6457 -0.7137 3.5629 8 6 2.9729 -2.0696 3.5045 9 6 3.4429 -2.7143 4.6301 10 6 3.5803 -2.0242 5.8206 11 6 3.2524 -0.6771 5.8897 12 8 3.3900 -0.0039 7.0623 13 6 3.8778 -0.7450 8.1825 14 6 3.9629 0.1598 9.3847 15 7 4.4007 -0.3253 10.5635 16 8 3.6384 1.3246 9.2913 17 6 2.7852 -0.0189 4.7643 18 6 2.0399 -0.7212 -1.2492 19 6 3.4847 -0.3520 -1.6316 20 7 2.9978 -0.3176 -3.0268 21 6 3.5875 -0.4756 -4.2526 22 1 2.9927 -0.4037 -5.1512 23 6 4.9496 -0.7283 -4.3402 24 7 5.6742 -0.8164 -3.2450 25 14 5.7538 -0.9445 -6.0122 26 1 4.7286 -0.8006 -7.0769 27 1 6.8040 0.0895 -6.1938 28 1 6.3682 -2.2939 -6.0952 29 6 1.6213 -0.0471 -2.5684 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.2490 -1.6317 1.1527 34 1 2.8625 -2.6126 2.5774 35 1 3.6999 -3.7621 4.5825 36 1 3.9445 -2.5351 6.6996 37 1 3.1981 -1.5697 8.3963 38 1 4.8676 -1.1398 7.9537 39 1 4.6607 -1.2568 10.6382 40 1 4.4559 0.2572 11.3372 41 1 2.5302 1.0292 4.8166 42 1 1.8528 -1.7947 -1.2263 43 1 3.8047 0.6191 -1.2539 44 1 4.2071 -1.1446 -1.4366 45 1 6.6261 -0.9933 -3.3062 46 1 0.8585 -0.5968 -3.1199 47 1 1.3908 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969799862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:51 Heat of formation + Delta-G solvation = -26.226614 kcal Electronic energy + Delta-G solvation = -29233.623672 eV Core-core repulsion = 24997.806526 eV Total energy + Delta-G solvation = -4235.817146 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.87152 -40.04482 -39.26037 -38.11768 -37.13926 -34.82105 -34.29557 -32.30103 -31.58090 -31.10816 -29.73207 -28.56027 -27.50069 -25.08242 -24.32974 -23.62374 -22.72315 -21.76059 -21.02649 -20.29079 -19.46221 -18.48354 -18.18409 -17.19045 -16.83649 -16.72887 -16.58953 -16.33254 -16.02417 -15.42990 -14.94485 -14.85095 -14.63110 -14.36882 -14.19999 -13.92884 -13.79679 -13.50701 -13.16083 -13.08826 -12.76197 -12.41707 -12.19841 -12.07718 -11.65120 -11.49737 -11.39125 -11.30495 -11.27416 -10.90323 -10.71163 -10.48104 -10.33349 -10.30830 -9.99375 -9.74322 -9.71610 -9.39099 -9.29634 -8.78952 -8.78144 -8.57279 -6.85338 -5.75029 -3.07082 0.61933 1.13087 2.01641 2.17599 2.83307 3.16542 3.39533 3.44374 3.45447 3.47527 3.71973 4.14471 4.35079 4.45645 4.46360 4.49900 4.52527 4.77114 4.87622 5.05131 5.15218 5.24729 5.29888 5.32124 5.55608 5.65239 5.68696 5.81476 5.89847 5.96501 6.04580 6.06204 6.11497 6.13865 6.24889 6.31428 6.38371 6.43640 6.60851 6.64039 6.68498 6.82444 6.98889 7.25869 7.38674 7.57917 7.65184 7.66947 7.99958 8.34362 9.06544 9.72757 10.62245 11.42121 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017172 B = 0.001862 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.150569 B =15035.017680 C =15831.175014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.089 0.911 4 N -0.710 5.710 5 C 0.556 3.444 6 O -0.535 6.535 7 C -0.087 4.087 8 C -0.119 4.119 9 C -0.086 4.086 10 C -0.190 4.190 11 C 0.118 3.882 12 O -0.288 6.288 13 C 0.039 3.961 14 C 0.519 3.481 15 N -0.852 5.852 16 O -0.514 6.514 17 C -0.088 4.088 18 C -0.147 4.147 19 C 0.170 3.830 20 N -0.613 5.613 21 C -0.221 4.221 22 H 0.080 0.920 23 C -0.009 4.009 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.130 3.870 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.399 0.601 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.403 0.597 40 H 0.409 0.591 41 H 0.146 0.854 42 H 0.088 0.912 43 H 0.027 0.973 44 H 0.071 0.929 45 H 0.252 0.748 46 H 0.044 0.956 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.045 -8.459 27.099 28.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.107 0.893 4 N -0.360 5.360 5 C 0.343 3.657 6 O -0.413 6.413 7 C -0.090 4.090 8 C -0.138 4.138 9 C -0.104 4.104 10 C -0.209 4.209 11 C 0.073 3.927 12 O -0.201 6.201 13 C -0.040 4.040 14 C 0.302 3.698 15 N -0.418 5.418 16 O -0.388 6.388 17 C -0.107 4.107 18 C -0.167 4.167 19 C 0.045 3.955 20 N -0.339 5.339 21 C -0.349 4.349 22 H 0.098 0.902 23 C -0.206 4.206 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C 0.004 3.996 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.234 0.766 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.231 0.769 40 H 0.241 0.759 41 H 0.164 0.836 42 H 0.106 0.894 43 H 0.044 0.956 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.299 -6.710 26.632 27.970 hybrid contribution 1.021 -1.057 -0.429 1.531 sum -4.278 -7.767 26.202 27.662 Atomic orbital electron populations 1.22133 0.95573 1.01778 1.02196 1.21137 0.93543 0.97677 0.83087 0.89283 1.46002 1.66447 1.14110 1.09450 1.18130 0.78008 0.86519 0.83082 1.90780 1.50232 1.15352 1.84930 1.19808 1.01517 0.94026 0.93678 1.21306 0.99751 0.93519 0.99259 1.20874 0.97654 1.00086 0.91743 1.21372 1.06193 0.93447 0.99912 1.18811 0.97524 0.90744 0.85663 1.86181 1.80941 1.37003 1.15944 1.22441 1.01601 0.94449 0.85505 1.20067 0.77114 0.88377 0.84278 1.43652 1.70149 1.15985 1.12057 1.90842 1.46415 1.17352 1.84164 1.20481 0.99728 1.01485 0.89026 1.23820 1.00963 0.99630 0.92260 1.22304 0.91344 0.98570 0.83291 1.46008 1.03305 1.82571 1.02015 1.19079 0.91445 1.41371 0.83006 0.90223 1.24784 0.96057 1.02482 0.97254 1.69831 1.06015 1.55329 1.25681 0.86056 0.79316 0.77342 0.83117 1.20460 1.21783 1.21752 1.22488 0.89645 0.96666 0.90834 0.92716 0.92696 0.91340 0.76555 0.84993 0.84907 0.85218 0.88723 0.88645 0.76864 0.75908 0.83576 0.89397 0.95560 0.91029 0.93747 0.93749 0.94705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.31 37.16 0.35 -1.78 16 2 C 0.15 2.34 2.38 -67.94 -0.16 2.18 16 3 H 0.09 1.61 7.41 -51.93 -0.39 1.23 16 4 N -0.71 -9.84 5.03 -54.75 -0.28 -10.12 16 5 C 0.56 8.50 7.74 -12.32 -0.10 8.41 16 6 O -0.54 -10.08 16.01 5.32 0.09 -10.00 16 7 C -0.09 -1.11 5.87 -104.98 -0.62 -1.72 16 8 C -0.12 -1.17 9.54 -39.17 -0.37 -1.54 16 9 C -0.09 -0.68 10.03 -39.66 -0.40 -1.08 16 10 C -0.19 -1.50 9.03 -39.35 -0.36 -1.85 16 11 C 0.12 1.27 6.68 -39.27 -0.26 1.00 16 12 O -0.29 -3.18 9.67 -39.35 -0.38 -3.56 16 13 C 0.04 0.23 5.22 36.00 0.19 0.42 16 14 C 0.52 3.95 8.18 -10.99 -0.09 3.86 16 15 N -0.85 -2.32 8.87 31.22 0.28 -2.04 16 16 O -0.51 -6.91 17.34 -14.35 -0.25 -7.16 16 17 C -0.09 -1.14 9.53 -39.02 -0.37 -1.51 16 18 C -0.15 -2.61 3.47 -89.70 -0.31 -2.92 16 19 C 0.17 3.97 7.08 -2.84 -0.02 3.95 16 20 N -0.61 -15.75 3.70 -177.72 -0.66 -16.41 16 21 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 22 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 24 N -0.92 -27.48 11.39 55.49 0.63 -26.85 16 25 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 C 0.13 2.61 7.64 -2.97 -0.02 2.59 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.89 7.52 -51.93 -0.39 0.50 16 33 H 0.40 4.55 6.63 -40.82 -0.27 4.28 16 34 H 0.13 1.05 6.40 -52.49 -0.34 0.72 16 35 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.13 0.56 6.28 -52.49 -0.33 0.23 16 37 H 0.09 0.29 7.66 -51.93 -0.40 -0.11 16 38 H 0.10 0.32 7.66 -51.93 -0.40 -0.08 16 39 H 0.40 -0.36 8.83 -40.82 -0.36 -0.72 16 40 H 0.41 0.89 8.93 -40.82 -0.36 0.53 16 41 H 0.15 2.08 7.65 -52.49 -0.40 1.68 16 42 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.03 0.66 7.99 -51.93 -0.41 0.24 16 44 H 0.07 1.83 7.16 -51.93 -0.37 1.46 16 45 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 395.75 15.07 5.96 5.96 Total: -1.00 -39.21 395.75 -8.93 -48.13 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.50 Total: 1.56 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -2.80 Total: 3.22 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.02 Total: -55.41 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.54 Total: -20.72 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -39.21 -8.93 -48.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969799862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.908 kcal (2) G-P(sol) polarization free energy of solvation -39.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds