Wall clock time and date at job start Wed Apr 1 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 5 5 C 1.34777 * 120.00199 * 275.00460 * 4 2 1 6 6 O 1.21553 * 119.99924 * 359.97438 * 5 4 2 7 7 C 1.47859 * 120.00021 * 180.27513 * 5 4 2 8 8 C 1.39604 * 120.11778 * 359.43996 * 7 5 4 9 9 C 1.37964 * 119.96811 * 179.74571 * 8 7 5 10 10 C 1.38289 * 120.20409 * 0.56210 * 9 8 7 11 11 C 1.38817 * 120.23870 * 359.69421 * 10 9 8 12 12 O 1.35906 * 119.98289 * 180.02562 * 11 10 9 13 13 C 1.42902 * 117.00390 * 0.02562 * 12 11 10 14 14 C 1.50697 * 109.47008 * 180.02562 * 13 12 11 15 15 N 1.34778 * 119.99773 * 180.02562 * 14 13 12 16 16 O 1.21281 * 120.00397 * 359.97438 * 14 13 12 17 17 C 1.38492 * 120.02953 * 0.02562 * 11 10 9 18 18 C 1.52995 * 109.46966 * 240.00307 * 2 1 3 19 19 C 1.53946 * 113.74028 * 158.74547 * 18 2 1 20 20 N 1.47813 * 86.03386 * 222.08002 * 19 18 2 21 21 C 1.36940 * 134.45400 * 204.64384 * 20 19 18 22 22 H 1.08003 * 119.99504 * 179.86568 * 21 20 19 23 23 C 1.38809 * 120.00589 * 359.86213 * 21 20 19 24 24 N 1.31621 * 119.99455 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00490 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46966 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46978 * 120.00289 * 25 23 21 28 28 H 1.48496 * 109.47363 * 240.00360 * 25 23 21 29 29 C 1.47579 * 91.05080 * 24.54796 * 20 19 18 30 30 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 32 32 H 1.08998 * 109.47338 * 59.99872 * 1 2 3 33 33 H 0.97001 * 120.00074 * 94.99564 * 4 2 1 34 34 H 1.08000 * 120.01613 * 0.03285 * 8 7 5 35 35 H 1.07993 * 119.90128 * 180.27685 * 9 8 7 36 36 H 1.07998 * 119.88025 * 179.72036 * 10 9 8 37 37 H 1.08995 * 109.46966 * 300.00438 * 13 12 11 38 38 H 1.09000 * 109.46514 * 60.00329 * 13 12 11 39 39 H 0.96996 * 120.00313 * 359.97438 * 15 14 13 40 40 H 0.97003 * 119.99911 * 179.97438 * 15 14 13 41 41 H 1.07997 * 120.10379 * 180.02562 * 17 11 10 42 42 H 1.09000 * 112.94494 * 290.32780 * 18 2 1 43 43 H 1.09001 * 113.77118 * 336.34210 * 19 18 2 44 44 H 1.08997 * 113.77603 * 107.73992 * 19 18 2 45 45 H 0.97004 * 119.99952 * 179.97438 * 24 23 21 46 46 H 1.09006 * 113.76945 * 221.15066 * 29 20 19 47 47 H 1.08998 * 113.87187 * 89.76979 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8583 1.1613 2.4116 7 6 2.6457 -0.7137 3.5629 8 6 2.9729 -2.0696 3.5045 9 6 3.4429 -2.7143 4.6301 10 6 3.5803 -2.0242 5.8206 11 6 3.2524 -0.6771 5.8897 12 8 3.3900 -0.0039 7.0623 13 6 3.8778 -0.7450 8.1825 14 6 3.9629 0.1598 9.3847 15 7 4.4007 -0.3253 10.5635 16 8 3.6384 1.3246 9.2913 17 6 2.7852 -0.0189 4.7643 18 6 2.0399 -0.7212 -1.2492 19 6 3.4847 -0.3520 -1.6316 20 7 2.9978 -0.3176 -3.0268 21 6 3.5875 -0.4756 -4.2526 22 1 2.9927 -0.4037 -5.1512 23 6 4.9496 -0.7283 -4.3402 24 7 5.6742 -0.8164 -3.2450 25 14 5.7538 -0.9445 -6.0122 26 1 4.7286 -0.8006 -7.0769 27 1 6.8040 0.0895 -6.1938 28 1 6.3682 -2.2939 -6.0952 29 6 1.6213 -0.0471 -2.5684 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.2490 -1.6317 1.1527 34 1 2.8625 -2.6126 2.5774 35 1 3.6999 -3.7621 4.5825 36 1 3.9445 -2.5351 6.6996 37 1 3.1981 -1.5697 8.3963 38 1 4.8676 -1.1398 7.9537 39 1 4.6607 -1.2568 10.6382 40 1 4.4559 0.2572 11.3372 41 1 2.5302 1.0292 4.8166 42 1 1.8528 -1.7947 -1.2263 43 1 3.8047 0.6191 -1.2539 44 1 4.2071 -1.1446 -1.4366 45 1 6.6261 -0.9933 -3.3062 46 1 0.8585 -0.5968 -3.1199 47 1 1.3908 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969799862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:50 Heat of formation + Delta-G solvation = -56.962289 kcal Electronic energy + Delta-G solvation = -29234.956471 eV Core-core repulsion = 24997.806526 eV Total energy + Delta-G solvation = -4237.149945 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.66525 -41.02832 -40.16173 -39.57670 -37.98919 -36.24750 -34.80058 -34.20438 -32.63578 -31.98864 -30.76290 -29.33823 -29.11473 -26.67982 -25.77799 -24.99406 -23.48484 -22.90243 -21.97940 -21.38357 -20.75325 -19.54365 -18.75581 -18.64378 -17.93294 -17.57883 -17.37953 -17.14353 -16.94102 -16.87998 -16.24101 -16.04627 -15.76431 -15.52932 -15.36680 -14.92066 -14.80366 -14.67994 -14.65947 -14.09347 -13.86442 -13.57722 -13.35732 -13.24857 -13.08570 -12.92175 -12.84257 -12.68990 -12.51456 -12.17044 -12.09997 -11.95430 -11.74566 -11.49803 -11.26136 -11.12985 -10.98582 -10.86351 -10.75392 -10.20932 -9.94327 -9.31340 -8.91366 -7.90003 -5.23578 -0.21650 0.38276 1.45380 1.46939 1.48145 1.57040 1.62680 1.82846 2.15611 2.47652 2.83598 2.84946 3.30701 3.38087 3.62429 3.71936 3.78906 3.91242 3.95249 4.03572 4.12959 4.14064 4.18475 4.30462 4.34026 4.46501 4.53389 4.60030 4.75501 4.83153 4.86919 4.89044 5.02095 5.09293 5.19269 5.26830 5.29716 5.33771 5.36529 5.46810 5.55907 5.60951 5.67211 5.82279 5.94199 6.25159 6.44629 6.54674 6.92526 7.19636 7.26670 7.61402 8.57342 9.27093 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017172 B = 0.001862 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.150569 B =15035.017680 C =15831.175014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.158 3.842 3 H 0.057 0.943 4 N -0.700 5.700 5 C 0.553 3.447 6 O -0.584 6.584 7 C -0.108 4.108 8 C -0.119 4.119 9 C -0.076 4.076 10 C -0.171 4.171 11 C 0.112 3.888 12 O -0.324 6.324 13 C 0.031 3.969 14 C 0.513 3.487 15 N -0.824 5.824 16 O -0.588 6.588 17 C -0.121 4.121 18 C -0.107 4.107 19 C 0.166 3.834 20 N -0.644 5.644 21 C -0.234 4.234 22 H 0.085 0.915 23 C -0.070 4.070 24 N -0.954 5.954 25 Si 0.979 3.021 26 H -0.264 1.264 27 H -0.297 1.297 28 H -0.289 1.289 29 C 0.129 3.871 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.413 0.587 34 H 0.151 0.849 35 H 0.175 0.825 36 H 0.177 0.823 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.424 0.576 40 H 0.413 0.587 41 H 0.112 0.888 42 H 0.110 0.890 43 H -0.001 1.001 44 H 0.045 0.955 45 H 0.248 0.752 46 H 0.068 0.932 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.350 -12.449 28.049 31.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.052 3.948 3 H 0.075 0.925 4 N -0.351 5.351 5 C 0.341 3.659 6 O -0.465 6.465 7 C -0.111 4.111 8 C -0.138 4.138 9 C -0.094 4.094 10 C -0.189 4.189 11 C 0.067 3.933 12 O -0.238 6.238 13 C -0.047 4.047 14 C 0.298 3.702 15 N -0.391 5.391 16 O -0.467 6.467 17 C -0.141 4.141 18 C -0.127 4.127 19 C 0.041 3.959 20 N -0.370 5.370 21 C -0.362 4.362 22 H 0.103 0.897 23 C -0.263 4.263 24 N -0.604 5.604 25 Si 0.807 3.193 26 H -0.188 1.188 27 H -0.224 1.224 28 H -0.215 1.215 29 C 0.004 3.996 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.252 0.748 34 H 0.168 0.832 35 H 0.192 0.808 36 H 0.194 0.806 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.257 0.743 40 H 0.246 0.754 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.017 0.983 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.616 -10.788 27.617 30.177 hybrid contribution 1.147 0.154 -0.584 1.296 sum -4.470 -10.634 27.033 29.391 Atomic orbital electron populations 1.22049 0.93143 1.03338 1.02215 1.20886 0.95229 0.95811 0.82825 0.92482 1.45852 1.66025 1.14655 1.08572 1.18633 0.77133 0.86071 0.84066 1.90745 1.52464 1.17534 1.85757 1.19600 1.03831 0.95449 0.92226 1.21583 0.99096 0.92016 1.01099 1.21380 0.95600 1.01772 0.90619 1.21864 1.03663 0.91755 1.01629 1.18837 0.97593 0.91926 0.84957 1.86140 1.81454 1.39122 1.17072 1.22862 1.04227 0.94344 0.83231 1.20544 0.76242 0.87660 0.85783 1.43472 1.67782 1.17164 1.10692 1.90818 1.50115 1.20396 1.85414 1.20382 1.02322 1.00482 0.90890 1.23442 0.96148 1.00739 0.92351 1.22191 0.94130 0.96424 0.83182 1.46442 1.05859 1.82776 1.01933 1.19504 0.91968 1.40297 0.84433 0.89700 1.25648 0.96778 1.03032 1.00813 1.70024 1.05818 1.56800 1.27728 0.84998 0.78171 0.76791 0.79303 1.18817 1.22408 1.21542 1.22686 0.87732 0.97501 0.91663 0.90300 0.93475 0.90587 0.74846 0.83174 0.80809 0.80579 0.84906 0.85237 0.74318 0.75427 0.87029 0.87149 0.98278 0.93646 0.94339 0.91416 0.94123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.31 71.98 0.67 -3.14 16 2 C 0.16 4.92 2.38 44.99 0.11 5.02 16 3 H 0.06 2.18 7.41 -2.39 -0.02 2.16 16 4 N -0.70 -19.45 5.03 -445.41 -2.24 -21.69 16 5 C 0.55 17.80 7.74 86.79 0.67 18.47 16 6 O -0.58 -23.93 16.01 -3.88 -0.06 -23.99 16 7 C -0.11 -2.82 5.87 -20.10 -0.12 -2.94 16 8 C -0.12 -2.08 9.54 22.53 0.21 -1.86 16 9 C -0.08 -0.87 10.03 22.22 0.22 -0.65 16 10 C -0.17 -1.99 9.03 22.42 0.20 -1.78 16 11 C 0.11 2.33 6.68 22.47 0.15 2.48 16 12 O -0.32 -7.13 9.67 -73.45 -0.71 -7.84 16 13 C 0.03 0.29 5.22 71.24 0.37 0.66 16 14 C 0.51 7.34 8.18 87.66 0.72 8.06 16 15 N -0.82 -2.70 8.87 -173.53 -1.54 -4.24 16 16 O -0.59 -16.65 17.34 16.00 0.28 -16.37 16 17 C -0.12 -3.37 9.53 22.63 0.22 -3.16 16 18 C -0.11 -3.72 3.47 -10.14 -0.04 -3.76 16 19 C 0.17 7.99 7.08 86.44 0.61 8.60 16 20 N -0.64 -33.29 3.70 -716.18 -2.65 -35.94 16 21 C -0.23 -13.25 10.70 84.03 0.90 -12.35 16 22 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 23 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 24 N -0.95 -58.39 11.39 21.65 0.25 -58.15 16 25 Si 0.98 46.16 29.55 68.60 2.03 48.19 16 26 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 28 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 29 C 0.13 5.05 7.64 86.48 0.66 5.71 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.08 1.83 7.52 -2.39 -0.02 1.81 16 33 H 0.41 8.89 6.63 -92.71 -0.61 8.27 16 34 H 0.15 1.96 6.40 -2.91 -0.02 1.94 16 35 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 36 H 0.18 0.35 6.28 -2.91 -0.02 0.33 16 37 H 0.13 0.19 7.66 -2.39 -0.02 0.17 16 38 H 0.13 0.29 7.66 -2.39 -0.02 0.28 16 39 H 0.42 -2.27 8.83 -92.71 -0.82 -3.09 16 40 H 0.41 1.19 8.93 -92.71 -0.83 0.36 16 41 H 0.11 3.73 7.65 -2.91 -0.02 3.71 16 42 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 43 H 0.00 -0.03 7.99 -2.39 -0.02 -0.05 16 44 H 0.05 2.40 7.16 -2.39 -0.02 2.38 16 45 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 46 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 47 H 0.04 1.57 8.10 -2.39 -0.02 1.55 16 Total: -1.00 -93.90 395.75 0.15 -93.74 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -1.22 Total: 10.48 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 6.03 Total: 15.80 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -6.19 Total: -120.02 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -0.49 Total: -48.20 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -93.90 0.15 -93.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969799862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.781 kcal (2) G-P(sol) polarization free energy of solvation -93.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds