Wall clock time and date at job start Wed Apr 1 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47148 * 2 1 4 4 N 1.46501 * 109.47136 * 119.99930 * 2 1 3 5 5 C 1.34772 * 119.99753 * 274.99983 * 4 2 1 6 6 O 1.21627 * 120.00339 * 359.97438 * 5 4 2 7 7 C 1.47296 * 119.99849 * 180.02562 * 5 4 2 8 8 C 1.36578 * 127.53133 * 0.02562 * 7 5 4 9 9 O 1.34103 * 108.89630 * 179.88422 * 8 7 5 10 10 C 1.33380 * 111.28810 * 359.73304 * 9 8 7 11 11 C 1.36168 * 108.07659 * 0.27857 * 10 9 8 12 12 C 1.47712 * 122.28666 * 178.62122 * 11 10 9 13 13 O 1.21623 * 122.49463 * 224.10559 * 12 11 10 14 14 N 1.35711 * 115.14841 * 44.27619 * 12 11 10 15 15 C 1.45345 * 119.12852 * 14.05689 * 14 12 11 16 16 C 1.52871 * 113.82179 * 273.80532 * 15 14 12 17 17 C 1.50535 * 128.62408 * 181.01898 * 10 9 8 18 18 C 1.53004 * 109.46862 * 239.99803 * 2 1 3 19 19 C 1.53499 * 114.20194 * 175.68147 * 18 2 1 20 20 N 1.47073 * 87.98271 * 220.34656 * 19 18 2 21 21 C 1.36940 * 136.05404 * 207.09125 * 20 19 18 22 22 H 1.07992 * 120.00476 * 7.50014 * 21 20 19 23 23 C 1.38809 * 119.99403 * 187.50851 * 21 20 19 24 24 N 1.31620 * 120.00068 * 174.39899 * 23 21 20 25 25 Si 1.86807 * 120.00352 * 354.39502 * 23 21 20 26 26 H 1.48500 * 109.46966 * 174.95922 * 25 23 21 27 27 H 1.48493 * 109.47091 * 294.96098 * 25 23 21 28 28 H 1.48504 * 109.46855 * 54.96130 * 25 23 21 29 29 C 1.47068 * 87.88382 * 27.34125 * 20 19 18 30 30 H 1.08999 * 109.47223 * 304.63944 * 1 2 3 31 31 H 1.08999 * 109.46923 * 64.63286 * 1 2 3 32 32 H 1.08998 * 109.47162 * 184.63897 * 1 2 3 33 33 H 0.96998 * 120.00354 * 94.99936 * 4 2 1 34 34 H 1.07999 * 125.55377 * 359.88124 * 8 7 5 35 35 H 0.97004 * 120.43639 * 194.07387 * 14 12 11 36 36 H 1.09000 * 108.61386 * 152.68457 * 15 14 12 37 37 H 1.09002 * 108.50284 * 34.84769 * 15 14 12 38 38 H 1.09001 * 109.46679 * 284.33264 * 16 15 14 39 39 H 1.08990 * 109.46444 * 164.34604 * 16 15 14 40 40 H 1.08996 * 109.44833 * 229.05417 * 17 10 9 41 41 H 1.09002 * 109.44501 * 348.99947 * 17 10 9 42 42 H 1.08999 * 113.41397 * 308.87998 * 18 2 1 43 43 H 1.08997 * 113.46896 * 105.57052 * 19 18 2 44 44 H 1.09003 * 113.52350 * 335.12944 * 19 18 2 45 45 H 0.97005 * 119.99470 * 355.00405 * 24 23 21 46 46 H 1.09002 * 113.46505 * 87.44231 * 29 20 19 47 47 H 1.08999 * 113.46808 * 217.87742 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8582 1.1620 2.4116 7 6 2.6386 -0.7124 3.5596 8 6 3.0059 -2.0230 3.6720 9 8 3.3969 -2.2579 4.9331 10 6 3.3142 -1.1552 5.6790 11 6 2.8458 -0.1472 4.8925 12 6 2.6050 1.2137 5.4140 13 8 1.6045 1.8498 5.1428 14 7 3.5833 1.7055 6.2158 15 6 4.8737 1.0375 6.2486 16 6 4.9444 -0.1205 7.2442 17 6 3.6719 -0.9733 7.1299 18 6 2.0399 -0.7213 -1.2493 19 6 3.5660 -0.6940 -1.4128 20 7 3.3557 -0.4731 -2.8516 21 6 4.0528 -0.7332 -4.0013 22 1 4.9534 -1.3279 -3.9639 23 6 3.6017 -0.2323 -5.2147 24 7 4.3275 -0.3877 -6.3015 25 14 1.9643 0.6624 -5.3052 26 1 1.7699 1.2015 -6.6751 27 1 0.8651 -0.2833 -4.9848 28 1 1.9563 1.7802 -4.3275 29 6 2.0705 0.1558 -2.5117 30 1 -0.3633 0.5841 0.8455 31 1 -0.3633 0.4403 -0.9286 32 1 -0.3633 -1.0243 0.0831 33 1 2.2490 -1.6317 1.1527 34 1 2.9849 -2.7517 2.8751 35 1 3.4234 2.4924 6.7600 36 1 5.6377 1.7692 6.5113 37 1 5.0896 0.6529 5.2518 38 1 5.0267 0.2753 8.2565 39 1 5.8158 -0.7367 7.0232 40 1 2.8523 -0.4731 7.6458 41 1 3.8467 -1.9479 7.5855 42 1 1.5924 -1.7045 -1.3948 43 1 4.0440 -1.6468 -1.1853 44 1 4.0424 0.1473 -0.9096 45 1 5.2095 -0.7874 -6.2427 46 1 2.1518 1.2215 -2.2980 47 1 1.2744 -0.0730 -3.2203 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970183968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:14:16 Heat of formation + Delta-G solvation = -23.048794 kcal Electronic energy + Delta-G solvation = -30789.505160 eV Core-core repulsion = 26553.825815 eV Total energy + Delta-G solvation = -4235.679345 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.95412 -41.11912 -40.52932 -39.86545 -37.62440 -36.31316 -34.57687 -34.07676 -33.79224 -32.11497 -30.66733 -29.58092 -27.25565 -26.94589 -25.90357 -25.19455 -24.39840 -22.68430 -22.13846 -21.40866 -20.75252 -20.63086 -19.55964 -18.46947 -18.39885 -17.75556 -17.44389 -17.42157 -16.98512 -16.55987 -16.25914 -16.01432 -15.73250 -15.53345 -15.36464 -15.15110 -15.12855 -14.86046 -14.46655 -14.30505 -14.06871 -13.71976 -13.69499 -13.38155 -13.13574 -13.08294 -12.69866 -12.62523 -12.45161 -12.37729 -12.04470 -11.82413 -11.70446 -11.34273 -11.26278 -11.17425 -11.06952 -10.96280 -10.81845 -10.13604 -10.12661 -9.67526 -9.24553 -8.62652 -5.49290 0.24721 0.30835 1.38223 1.48480 1.55065 1.66456 1.68883 2.02229 2.24855 2.43061 2.53207 2.95833 3.17737 3.34675 3.42106 3.53112 3.68719 3.82777 3.87530 3.93971 4.15227 4.17136 4.20627 4.27646 4.38152 4.46356 4.48445 4.56329 4.64380 4.65354 4.73197 4.77029 4.79222 4.83460 4.87896 4.98544 5.03718 5.09692 5.17592 5.19034 5.27087 5.41264 5.49373 5.75627 5.93694 5.97051 6.07257 6.55548 6.68316 7.16846 7.24421 7.31016 8.25881 8.88890 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019581 B = 0.002400 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.599327 B =11664.239341 C =12010.541610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.163 3.837 3 H 0.063 0.937 4 N -0.700 5.700 5 C 0.577 3.423 6 O -0.569 6.569 7 C -0.221 4.221 8 C 0.052 3.948 9 O -0.150 6.150 10 C 0.057 3.943 11 C -0.235 4.235 12 C 0.584 3.416 13 O -0.560 6.560 14 N -0.718 5.718 15 C 0.097 3.903 16 C -0.124 4.124 17 C -0.046 4.046 18 C -0.101 4.101 19 C 0.128 3.872 20 N -0.661 5.661 21 C -0.290 4.290 22 H 0.053 0.947 23 C -0.086 4.086 24 N -0.971 5.971 25 Si 1.105 2.895 26 H -0.305 1.305 27 H -0.262 1.262 28 H -0.267 1.267 29 C 0.096 3.904 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.415 0.585 34 H 0.264 0.736 35 H 0.411 0.589 36 H 0.111 0.889 37 H 0.054 0.946 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.120 0.880 42 H 0.126 0.874 43 H 0.061 0.939 44 H 0.034 0.966 45 H 0.246 0.754 46 H 0.045 0.955 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.723 -6.650 35.256 35.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.058 3.942 3 H 0.081 0.919 4 N -0.353 5.353 5 C 0.365 3.635 6 O -0.449 6.449 7 C -0.226 4.226 8 C -0.018 4.018 9 O -0.043 6.043 10 C 0.005 3.995 11 C -0.240 4.240 12 C 0.371 3.629 13 O -0.437 6.437 14 N -0.372 5.372 15 C -0.027 4.027 16 C -0.162 4.162 17 C -0.083 4.083 18 C -0.121 4.121 19 C 0.003 3.997 20 N -0.389 5.389 21 C -0.418 4.418 22 H 0.071 0.929 23 C -0.278 4.278 24 N -0.616 5.616 25 Si 0.931 3.069 26 H -0.234 1.234 27 H -0.188 1.188 28 H -0.193 1.193 29 C -0.029 4.029 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.252 0.748 34 H 0.279 0.721 35 H 0.249 0.751 36 H 0.129 0.871 37 H 0.072 0.928 38 H 0.129 0.871 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.138 0.862 42 H 0.144 0.856 43 H 0.079 0.921 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.208 -5.252 33.906 34.382 hybrid contribution 1.484 -0.232 0.241 1.522 sum -0.723 -5.484 34.147 34.592 Atomic orbital electron populations 1.22091 0.93771 1.03317 1.02175 1.20743 0.94935 0.95999 0.82566 0.91922 1.45640 1.66976 1.14467 1.08171 1.17547 0.77166 0.85942 0.82838 1.90864 1.51329 1.17476 1.85196 1.20859 1.12163 0.95719 0.93846 1.25322 0.95910 0.95572 0.84950 1.83627 1.65298 1.35317 1.20024 1.23195 0.98093 0.82295 0.95910 1.21056 1.11923 0.96400 0.94586 1.18046 0.82340 0.84857 0.77638 1.90843 1.31533 1.62385 1.58968 1.45691 1.13427 1.32397 1.45648 1.21459 0.83724 0.97088 1.00453 1.22263 0.96899 0.95432 1.01656 1.20596 1.00297 1.04209 0.83182 1.23272 0.96157 1.00467 0.92166 1.22481 0.94968 0.99061 0.83208 1.46118 1.20928 1.69864 1.02013 1.20040 1.07309 1.28874 0.85574 0.92899 1.27042 1.08563 1.01029 0.91137 1.71023 1.12024 1.48873 1.29693 0.83319 0.72478 0.76442 0.74667 1.23362 1.18825 1.19306 1.22944 0.88667 0.96347 0.94963 0.93791 0.90824 0.90085 0.74773 0.72081 0.75150 0.87120 0.92786 0.87149 0.87795 0.88593 0.86154 0.85647 0.92086 0.94863 0.94453 0.93746 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 9.48 71.98 0.68 -3.15 16 2 C 0.16 4.48 2.35 44.99 0.11 4.58 16 3 H 0.06 2.13 7.41 -2.39 -0.02 2.11 16 4 N -0.70 -16.04 4.93 -445.91 -2.20 -18.24 16 5 C 0.58 17.03 7.77 86.63 0.67 17.70 16 6 O -0.57 -23.20 15.42 4.81 0.07 -23.12 16 7 C -0.22 -5.08 6.32 -19.20 -0.12 -5.20 16 8 C 0.05 0.65 11.61 67.43 0.78 1.43 16 9 O -0.15 -1.88 10.48 7.98 0.08 -1.79 16 10 C 0.06 0.82 6.38 25.15 0.16 0.98 16 11 C -0.23 -5.44 4.95 -19.17 -0.09 -5.54 16 12 C 0.58 16.05 7.30 86.60 0.63 16.68 16 13 O -0.56 -21.71 17.11 4.83 0.08 -21.62 16 14 N -0.72 -11.75 5.26 -467.44 -2.46 -14.21 16 15 C 0.10 0.87 6.00 86.55 0.52 1.38 16 16 C -0.12 -0.30 6.32 30.76 0.19 -0.11 16 17 C -0.05 -0.27 5.65 30.00 0.17 -0.11 16 18 C -0.10 -3.01 3.52 -10.37 -0.04 -3.05 16 19 C 0.13 4.67 8.12 83.18 0.68 5.34 16 20 N -0.66 -31.88 3.69 -737.87 -2.72 -34.61 16 21 C -0.29 -17.06 11.08 84.03 0.93 -16.13 16 22 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 23 C -0.09 -5.23 5.50 84.86 0.47 -4.76 16 24 N -0.97 -63.67 13.70 21.65 0.30 -63.37 16 25 Si 1.10 54.37 25.16 68.60 1.73 56.10 16 26 H -0.31 -15.46 7.11 99.48 0.71 -14.75 16 27 H -0.26 -11.52 6.51 99.48 0.65 -10.88 16 28 H -0.27 -12.20 6.21 99.48 0.62 -11.58 16 29 C 0.10 3.84 5.27 83.27 0.44 4.28 16 30 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.41 6.03 7.60 -92.71 -0.70 5.33 16 34 H 0.26 0.64 7.49 -2.91 -0.02 0.61 16 35 H 0.41 5.36 8.95 -92.71 -0.83 4.53 16 36 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.05 0.74 6.91 -2.39 -0.02 0.72 16 38 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.10 0.67 8.05 -2.39 -0.02 0.65 16 41 H 0.12 0.12 8.14 -2.39 -0.02 0.11 16 42 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.03 1.26 8.11 -2.39 -0.02 1.24 16 45 H 0.25 16.18 8.73 -92.70 -0.81 15.37 16 46 H 0.04 1.82 7.50 -2.39 -0.02 1.80 16 47 H 0.06 2.25 4.72 -2.39 -0.01 2.24 16 Total: -1.00 -96.20 380.02 0.36 -95.83 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -0.69 Total: 10.69 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 6.18 Total: 14.36 kcal Atomic # 7 Polarization: -123.35 SS G_CDS: -7.09 Total: -130.43 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: 0.24 Total: -46.54 kcal Atomic # 14 Polarization: 54.37 SS G_CDS: 1.73 Total: 56.10 kcal Total: -96.20 0.36 -95.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970183968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.784 kcal (2) G-P(sol) polarization free energy of solvation -96.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds