Wall clock time and date at job start Wed Apr 1 2020 06:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47320 * 2 1 4 4 N 1.46506 * 109.46872 * 240.00200 * 2 1 3 5 5 C 1.34771 * 120.00097 * 85.00367 * 4 2 1 6 6 O 1.21594 * 120.00141 * 359.97438 * 5 4 2 7 7 C 1.47525 * 119.99895 * 180.02562 * 5 4 2 8 8 C 1.39856 * 120.71388 * 359.71423 * 7 5 4 9 9 C 1.38618 * 118.64154 * 179.81422 * 8 7 5 10 10 C 1.38100 * 119.52651 * 0.35222 * 9 8 7 11 11 N 1.32434 * 120.63840 * 359.91152 * 10 9 8 12 12 C 1.31995 * 122.28697 * 359.93224 * 11 10 9 13 13 O 1.35423 * 119.83485 * 179.97438 * 12 11 10 14 14 C 1.50924 * 121.01351 * 180.11466 * 10 9 8 15 15 C 1.52927 * 109.78109 * 342.73841 * 14 10 9 16 16 O 1.43204 * 108.52548 * 49.53964 * 15 14 10 17 17 C 1.42740 * 113.07497 * 289.24702 * 16 15 14 18 18 C 1.53001 * 109.47267 * 120.00271 * 2 1 3 19 19 C 1.53951 * 113.73995 * 282.19395 * 18 2 1 20 20 N 1.47809 * 86.03685 * 222.08732 * 19 18 2 21 21 C 1.36936 * 134.45512 * 204.65194 * 20 19 18 22 22 H 1.08000 * 120.00025 * 182.58602 * 21 20 19 23 23 C 1.38810 * 120.00284 * 2.57608 * 21 20 19 24 24 N 1.31627 * 119.99619 * 353.41918 * 23 21 20 25 25 Si 1.86798 * 120.00477 * 173.41921 * 23 21 20 26 26 H 1.48502 * 109.47180 * 94.96918 * 25 23 21 27 27 H 1.48495 * 109.47235 * 214.97323 * 25 23 21 28 28 H 1.48503 * 109.46863 * 334.97228 * 25 23 21 29 29 C 1.47582 * 91.05355 * 24.54905 * 20 19 18 30 30 H 1.09001 * 109.46859 * 304.48375 * 1 2 3 31 31 H 1.08998 * 109.47051 * 64.49006 * 1 2 3 32 32 H 1.09000 * 109.46557 * 184.48818 * 1 2 3 33 33 H 0.96999 * 119.99731 * 265.00041 * 4 2 1 34 34 H 1.08003 * 120.67926 * 0.03241 * 8 7 5 35 35 H 0.96702 * 114.00587 * 270.02235 * 13 12 11 36 36 H 1.09000 * 109.41569 * 102.83619 * 14 10 9 37 37 H 1.09004 * 109.41489 * 222.63903 * 14 10 9 38 38 H 1.09005 * 109.62394 * 169.25544 * 15 14 10 39 39 H 1.09002 * 109.62334 * 289.63251 * 15 14 10 40 40 H 1.09001 * 109.33341 * 171.79414 * 17 16 15 41 41 H 1.09007 * 109.33471 * 291.46199 * 17 16 15 42 42 H 1.08994 * 112.94313 * 53.78855 * 18 2 1 43 43 H 1.08998 * 113.76728 * 336.34863 * 19 18 2 44 44 H 1.08999 * 113.76246 * 107.74711 * 19 18 2 45 45 H 0.96996 * 119.99951 * 179.97438 * 24 23 21 46 46 H 1.08999 * 113.77269 * 221.15153 * 29 20 19 47 47 H 1.08998 * 113.87218 * 89.76688 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1471 -0.0182 -2.3571 6 8 1.8575 1.1615 -2.4118 7 6 2.6382 -0.7138 -3.5618 8 6 2.9802 -2.0691 -3.5146 9 6 3.4333 -2.6808 -4.6731 10 6 3.5426 -1.9421 -5.8348 11 7 3.2173 -0.6584 -5.8514 12 6 2.7779 -0.0285 -4.7780 13 8 2.4598 1.2859 -4.8510 14 6 4.0297 -2.5746 -7.1156 15 6 4.7383 -3.8936 -6.8046 16 8 3.8966 -4.6707 -5.9453 17 6 3.8033 -4.1395 -4.6238 18 6 2.0401 -0.7213 1.2492 19 6 1.9660 0.1298 2.5299 20 7 3.3034 -0.4145 2.8461 21 6 4.0104 -0.6099 4.0024 22 1 5.0168 -0.9995 3.9607 23 6 3.4338 -0.3070 5.2282 24 7 2.2604 0.2876 5.2745 25 14 4.3229 -0.7431 6.8121 26 1 5.0972 0.4326 7.2850 27 1 3.3304 -1.1308 7.8463 28 1 5.2482 -1.8778 6.5640 29 6 3.5694 -0.6652 1.4163 30 1 -0.3633 0.5819 0.8471 31 1 -0.3633 0.4426 -0.9275 32 1 -0.3632 -1.0246 0.0804 33 1 2.2490 -1.6318 -1.1527 34 1 2.8896 -2.6286 -2.5953 35 1 3.1976 1.8805 -4.6578 36 1 3.1802 -2.7654 -7.7714 37 1 4.7250 -1.8979 -7.6123 38 1 4.9196 -4.4391 -7.7308 39 1 5.6869 -3.6911 -6.3073 40 1 3.0418 -4.6865 -4.0679 41 1 4.7648 -4.2489 -4.1221 42 1 1.6227 -1.7218 1.3623 43 1 1.9616 1.2038 2.3441 44 1 1.1865 -0.1866 3.2230 45 1 1.8573 0.4990 6.1310 46 1 4.0678 -1.6149 1.2220 47 1 4.0372 0.1737 0.9010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970719506.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:43 Heat of formation + Delta-G solvation = -27.492979 kcal Electronic energy + Delta-G solvation = -30368.637427 eV Core-core repulsion = 26132.765367 eV Total energy + Delta-G solvation = -4235.872060 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.48585 -39.82936 -38.86409 -37.90040 -37.01671 -34.85244 -34.06512 -32.22117 -32.13641 -31.32197 -29.91608 -27.51262 -25.99966 -25.57837 -24.78216 -24.06498 -23.29000 -22.40899 -21.13641 -20.33774 -19.35183 -18.78298 -17.78623 -17.67232 -16.82102 -16.64412 -16.46961 -15.96842 -15.47697 -15.25588 -14.88782 -14.78787 -14.67842 -14.21258 -14.03644 -14.02494 -13.82561 -13.44538 -13.19096 -13.17613 -12.55390 -12.37229 -12.18669 -12.05062 -11.89786 -11.61892 -11.46017 -11.41430 -11.28785 -10.94424 -10.72101 -10.59403 -10.40651 -10.23219 -10.06428 -9.96624 -9.85437 -9.58119 -9.45972 -9.11540 -8.88157 -8.76432 -6.91870 -5.80418 -3.11566 0.20765 0.63387 2.61824 2.99963 3.15274 3.35810 3.36729 3.41743 3.44043 3.45105 3.95526 4.01130 4.15328 4.40600 4.42391 4.54050 4.63340 4.80844 4.86321 4.91861 5.07932 5.09008 5.13462 5.15369 5.19608 5.35519 5.37440 5.41191 5.50452 5.59581 5.64992 5.78772 5.94322 5.95306 6.03923 6.22948 6.30976 6.41255 6.52026 6.52817 6.57994 6.74737 7.18481 7.22970 7.33056 7.45849 7.51665 7.54624 7.94969 8.20914 9.01489 9.68044 10.56891 11.37229 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015185 B = 0.002325 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.496947 B =12042.401450 C =13220.247394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.152 3.848 3 H 0.089 0.911 4 N -0.713 5.713 5 C 0.561 3.439 6 O -0.519 6.519 7 C -0.200 4.200 8 C -0.019 4.019 9 C -0.193 4.193 10 C 0.185 3.815 11 N -0.509 5.509 12 C 0.377 3.623 13 O -0.458 6.458 14 C -0.107 4.107 15 C 0.058 3.942 16 O -0.371 6.371 17 C 0.108 3.892 18 C -0.147 4.147 19 C 0.176 3.824 20 N -0.612 5.612 21 C -0.225 4.225 22 H 0.079 0.921 23 C -0.007 4.007 24 N -0.920 5.920 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.289 1.289 28 H -0.280 1.280 29 C 0.125 3.875 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.395 0.605 34 H 0.147 0.853 35 H 0.407 0.593 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.061 0.939 40 H 0.112 0.888 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.029 0.971 44 H 0.074 0.926 45 H 0.254 0.746 46 H 0.040 0.960 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.490 -8.644 -24.617 26.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.107 0.893 4 N -0.364 5.364 5 C 0.346 3.654 6 O -0.396 6.396 7 C -0.207 4.207 8 C -0.046 4.046 9 C -0.195 4.195 10 C 0.048 3.952 11 N -0.228 5.228 12 C 0.196 3.804 13 O -0.266 6.266 14 C -0.145 4.145 15 C -0.019 4.019 16 O -0.289 6.289 17 C 0.031 3.969 18 C -0.167 4.167 19 C 0.050 3.950 20 N -0.338 5.338 21 C -0.352 4.352 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.567 5.567 25 Si 0.741 3.259 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.206 1.206 29 C -0.001 4.001 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.230 0.770 34 H 0.165 0.835 35 H 0.267 0.733 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.079 0.921 40 H 0.130 0.870 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.047 0.953 44 H 0.092 0.908 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.739 -7.603 -25.203 26.382 hybrid contribution 1.013 -0.350 1.917 2.197 sum 2.752 -7.953 -23.286 24.760 Atomic orbital electron populations 1.22115 0.95272 1.01971 1.02290 1.21158 0.93915 0.97485 0.82679 0.89257 1.46051 1.66842 1.13881 1.09657 1.17734 0.78466 0.86683 0.82522 1.90823 1.49307 1.14948 1.84524 1.21205 1.08247 0.95628 0.95604 1.21580 0.91882 0.92854 0.98238 1.21053 1.04948 0.99034 0.94464 1.20838 0.92074 0.87739 0.94570 1.67099 1.13947 1.10843 1.30961 1.19052 0.88863 0.86470 0.86061 1.84718 1.38565 1.11293 1.92015 1.21188 1.02468 0.97065 0.93742 1.22703 0.92747 0.91009 0.95438 1.88121 1.68994 1.50218 1.21565 1.21395 1.02176 0.88166 0.85190 1.23860 0.97593 1.00765 0.94517 1.22231 0.89632 0.93961 0.89144 1.46037 1.16073 1.72080 0.99606 1.19017 0.96904 1.36762 0.82542 0.90329 1.24786 0.97307 1.00829 0.97467 1.69823 1.17193 1.45443 1.24268 0.86121 0.78398 0.78031 0.83317 1.21674 1.21553 1.20591 1.22526 0.93052 0.97610 0.86889 0.91002 0.92733 0.92711 0.77036 0.83492 0.73321 0.88283 0.88142 0.87416 0.92073 0.87033 0.90916 0.89285 0.95337 0.90795 0.93596 0.94188 0.95101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.43 37.16 0.35 -1.84 16 2 C 0.15 2.26 2.29 -67.93 -0.16 2.11 16 3 H 0.09 1.54 7.49 -51.93 -0.39 1.15 16 4 N -0.71 -8.88 4.91 -54.85 -0.27 -9.15 16 5 C 0.56 7.77 7.74 -12.48 -0.10 7.67 16 6 O -0.52 -8.93 14.87 -16.41 -0.24 -9.18 16 7 C -0.20 -2.35 5.90 -104.73 -0.62 -2.97 16 8 C -0.02 -0.17 9.27 -38.84 -0.36 -0.53 16 9 C -0.19 -1.62 5.80 -104.60 -0.61 -2.23 16 10 C 0.18 1.77 6.68 -82.27 -0.55 1.22 16 11 N -0.51 -6.03 10.23 -9.14 -0.09 -6.12 16 12 C 0.38 4.75 7.77 -16.71 -0.13 4.62 16 13 O -0.46 -5.87 11.68 -39.65 -0.46 -6.33 16 14 C -0.11 -0.69 6.23 -27.81 -0.17 -0.87 16 15 C 0.06 0.30 6.83 37.12 0.25 0.56 16 16 O -0.37 -2.77 10.81 -35.23 -0.38 -3.15 16 17 C 0.11 0.68 6.66 35.94 0.24 0.92 16 18 C -0.15 -2.53 3.35 -89.69 -0.30 -2.83 16 19 C 0.18 3.99 7.02 -2.84 -0.02 3.97 16 20 N -0.61 -15.39 3.70 -177.69 -0.66 -16.05 16 21 C -0.22 -6.25 10.69 -15.06 -0.16 -6.41 16 22 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 23 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 24 N -0.92 -27.06 11.43 55.49 0.63 -26.43 16 25 Si 0.91 21.94 29.56 -169.99 -5.02 16.91 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 C 0.13 2.44 8.38 -2.96 -0.02 2.41 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.40 3.85 6.71 -40.82 -0.27 3.58 16 34 H 0.15 0.87 6.51 -52.48 -0.34 0.53 16 35 H 0.41 3.57 9.06 45.56 0.41 3.98 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.27 8.07 -51.93 -0.42 -0.15 16 40 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 43 H 0.03 0.67 8.04 -51.93 -0.42 0.26 16 44 H 0.07 1.85 7.20 -51.93 -0.37 1.47 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.03 0.61 8.10 -51.93 -0.42 0.19 16 LS Contribution 386.81 15.07 5.83 5.83 Total: -1.00 -35.93 386.81 -9.12 -45.04 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.00 Total: 3.12 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -2.45 Total: 5.50 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.39 Total: -57.75 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -1.09 Total: -18.66 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.93 -9.12 -45.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970719506.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.548 kcal (2) G-P(sol) polarization free energy of solvation -35.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds