Wall clock time and date at job start Wed Apr 1 2020 06:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47320 * 2 1 4 4 N 1.46506 * 109.46872 * 240.00200 * 2 1 3 5 5 C 1.34771 * 120.00097 * 85.00367 * 4 2 1 6 6 O 1.21594 * 120.00141 * 359.97438 * 5 4 2 7 7 C 1.47525 * 119.99895 * 180.02562 * 5 4 2 8 8 C 1.39856 * 120.71388 * 359.71423 * 7 5 4 9 9 C 1.38618 * 118.64154 * 179.81422 * 8 7 5 10 10 C 1.38100 * 119.52651 * 0.35222 * 9 8 7 11 11 N 1.32434 * 120.63840 * 359.91152 * 10 9 8 12 12 C 1.31995 * 122.28697 * 359.93224 * 11 10 9 13 13 O 1.35423 * 119.83485 * 179.97438 * 12 11 10 14 14 C 1.50924 * 121.01351 * 180.11466 * 10 9 8 15 15 C 1.52927 * 109.78109 * 342.73841 * 14 10 9 16 16 O 1.43204 * 108.52548 * 49.53964 * 15 14 10 17 17 C 1.42740 * 113.07497 * 289.24702 * 16 15 14 18 18 C 1.53001 * 109.47267 * 120.00271 * 2 1 3 19 19 C 1.53951 * 113.73995 * 282.19395 * 18 2 1 20 20 N 1.47809 * 86.03685 * 222.08732 * 19 18 2 21 21 C 1.36936 * 134.45512 * 204.65194 * 20 19 18 22 22 H 1.08000 * 120.00025 * 182.58602 * 21 20 19 23 23 C 1.38810 * 120.00284 * 2.57608 * 21 20 19 24 24 N 1.31627 * 119.99619 * 353.41918 * 23 21 20 25 25 Si 1.86798 * 120.00477 * 173.41921 * 23 21 20 26 26 H 1.48502 * 109.47180 * 94.96918 * 25 23 21 27 27 H 1.48495 * 109.47235 * 214.97323 * 25 23 21 28 28 H 1.48503 * 109.46863 * 334.97228 * 25 23 21 29 29 C 1.47582 * 91.05355 * 24.54905 * 20 19 18 30 30 H 1.09001 * 109.46859 * 304.48375 * 1 2 3 31 31 H 1.08998 * 109.47051 * 64.49006 * 1 2 3 32 32 H 1.09000 * 109.46557 * 184.48818 * 1 2 3 33 33 H 0.96999 * 119.99731 * 265.00041 * 4 2 1 34 34 H 1.08003 * 120.67926 * 0.03241 * 8 7 5 35 35 H 0.96702 * 114.00587 * 270.02235 * 13 12 11 36 36 H 1.09000 * 109.41569 * 102.83619 * 14 10 9 37 37 H 1.09004 * 109.41489 * 222.63903 * 14 10 9 38 38 H 1.09005 * 109.62394 * 169.25544 * 15 14 10 39 39 H 1.09002 * 109.62334 * 289.63251 * 15 14 10 40 40 H 1.09001 * 109.33341 * 171.79414 * 17 16 15 41 41 H 1.09007 * 109.33471 * 291.46199 * 17 16 15 42 42 H 1.08994 * 112.94313 * 53.78855 * 18 2 1 43 43 H 1.08998 * 113.76728 * 336.34863 * 19 18 2 44 44 H 1.08999 * 113.76246 * 107.74711 * 19 18 2 45 45 H 0.96996 * 119.99951 * 179.97438 * 24 23 21 46 46 H 1.08999 * 113.77269 * 221.15153 * 29 20 19 47 47 H 1.08998 * 113.87218 * 89.76688 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1471 -0.0182 -2.3571 6 8 1.8575 1.1615 -2.4118 7 6 2.6382 -0.7138 -3.5618 8 6 2.9802 -2.0691 -3.5146 9 6 3.4333 -2.6808 -4.6731 10 6 3.5426 -1.9421 -5.8348 11 7 3.2173 -0.6584 -5.8514 12 6 2.7779 -0.0285 -4.7780 13 8 2.4598 1.2859 -4.8510 14 6 4.0297 -2.5746 -7.1156 15 6 4.7383 -3.8936 -6.8046 16 8 3.8966 -4.6707 -5.9453 17 6 3.8033 -4.1395 -4.6238 18 6 2.0401 -0.7213 1.2492 19 6 1.9660 0.1298 2.5299 20 7 3.3034 -0.4145 2.8461 21 6 4.0104 -0.6099 4.0024 22 1 5.0168 -0.9995 3.9607 23 6 3.4338 -0.3070 5.2282 24 7 2.2604 0.2876 5.2745 25 14 4.3229 -0.7431 6.8121 26 1 5.0972 0.4326 7.2850 27 1 3.3304 -1.1308 7.8463 28 1 5.2482 -1.8778 6.5640 29 6 3.5694 -0.6652 1.4163 30 1 -0.3633 0.5819 0.8471 31 1 -0.3633 0.4426 -0.9275 32 1 -0.3632 -1.0246 0.0804 33 1 2.2490 -1.6318 -1.1527 34 1 2.8896 -2.6286 -2.5953 35 1 3.1976 1.8805 -4.6578 36 1 3.1802 -2.7654 -7.7714 37 1 4.7250 -1.8979 -7.6123 38 1 4.9196 -4.4391 -7.7308 39 1 5.6869 -3.6911 -6.3073 40 1 3.0418 -4.6865 -4.0679 41 1 4.7648 -4.2489 -4.1221 42 1 1.6227 -1.7218 1.3623 43 1 1.9616 1.2038 2.3441 44 1 1.1865 -0.1866 3.2230 45 1 1.8573 0.4990 6.1310 46 1 4.0678 -1.6149 1.2220 47 1 4.0372 0.1737 0.9010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970719506.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:42 Heat of formation + Delta-G solvation = -55.563859 kcal Electronic energy + Delta-G solvation = -30369.854672 eV Core-core repulsion = 26132.765367 eV Total energy + Delta-G solvation = -4237.089304 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.26082 -40.88485 -39.85044 -39.18000 -37.79349 -36.17785 -34.85621 -34.07843 -32.80246 -32.29887 -30.91286 -29.32072 -26.72280 -26.57578 -26.12239 -25.60890 -24.03598 -23.44517 -22.29809 -21.40427 -20.77758 -19.68126 -18.84790 -18.53246 -18.47815 -17.33155 -17.21459 -17.09736 -16.79887 -16.11900 -15.96228 -15.85864 -15.75424 -15.63162 -15.18344 -14.84945 -14.82220 -14.59800 -14.30046 -14.05987 -13.75934 -13.43132 -13.23135 -13.12649 -13.07924 -12.98808 -12.85863 -12.68132 -12.61569 -12.36624 -12.06104 -11.90414 -11.79133 -11.59332 -11.37313 -11.22467 -10.99896 -10.81640 -10.68546 -10.49880 -10.12540 -9.75941 -8.92804 -7.91292 -5.23503 -0.59716 -0.08925 1.46081 1.47301 1.56813 1.70668 1.98160 2.33929 2.47560 2.59692 2.91828 3.27007 3.30245 3.37452 3.39021 3.54644 3.61687 3.78481 3.94700 4.01158 4.13469 4.18282 4.26798 4.30808 4.43160 4.44831 4.57668 4.59140 4.62752 4.74102 4.77576 4.80068 4.83457 4.86810 4.93787 4.96097 5.05829 5.10286 5.25463 5.29222 5.30377 5.47976 5.55303 5.65476 5.93882 6.10451 6.42406 6.53453 6.71364 6.91970 7.18051 7.61184 8.56757 9.26281 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015185 B = 0.002325 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.496947 B =12042.401450 C =13220.247394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.164 3.836 3 H 0.063 0.937 4 N -0.700 5.700 5 C 0.563 3.437 6 O -0.560 6.560 7 C -0.216 4.216 8 C -0.008 4.008 9 C -0.188 4.188 10 C 0.174 3.826 11 N -0.530 5.530 12 C 0.357 3.643 13 O -0.478 6.478 14 C -0.106 4.106 15 C 0.058 3.942 16 O -0.387 6.387 17 C 0.106 3.894 18 C -0.108 4.108 19 C 0.170 3.830 20 N -0.643 5.643 21 C -0.235 4.235 22 H 0.084 0.916 23 C -0.068 4.068 24 N -0.954 5.954 25 Si 0.978 3.022 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.265 1.265 29 C 0.128 3.872 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.412 0.588 34 H 0.180 0.820 35 H 0.417 0.583 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.129 0.871 39 H 0.071 0.929 40 H 0.130 0.870 41 H 0.092 0.908 42 H 0.110 0.890 43 H 0.010 0.990 44 H 0.045 0.955 45 H 0.249 0.751 46 H 0.066 0.934 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.707 -11.730 -25.704 28.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.059 3.941 3 H 0.081 0.919 4 N -0.352 5.352 5 C 0.350 3.650 6 O -0.440 6.440 7 C -0.222 4.222 8 C -0.034 4.034 9 C -0.190 4.190 10 C 0.037 3.963 11 N -0.250 5.250 12 C 0.176 3.824 13 O -0.288 6.288 14 C -0.144 4.144 15 C -0.018 4.018 16 O -0.306 6.306 17 C 0.029 3.971 18 C -0.127 4.127 19 C 0.044 3.956 20 N -0.370 5.370 21 C -0.363 4.363 22 H 0.102 0.898 23 C -0.261 4.261 24 N -0.603 5.603 25 Si 0.806 3.194 26 H -0.218 1.218 27 H -0.220 1.220 28 H -0.189 1.189 29 C 0.003 3.997 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.250 0.750 34 H 0.197 0.803 35 H 0.278 0.722 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.147 0.853 39 H 0.090 0.910 40 H 0.147 0.853 41 H 0.110 0.890 42 H 0.128 0.872 43 H 0.028 0.972 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.085 0.915 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.988 -10.733 -26.330 28.590 hybrid contribution 0.694 0.604 2.131 2.321 sum 3.682 -10.129 -24.199 26.491 Atomic orbital electron populations 1.22053 0.94198 1.03133 1.01704 1.20777 0.94595 0.96013 0.82700 0.91894 1.45769 1.66447 1.14530 1.08433 1.18014 0.77641 0.86217 0.83139 1.90805 1.51133 1.16843 1.85173 1.21004 1.10110 0.96892 0.94239 1.21898 0.90243 0.91562 0.99692 1.21380 1.03643 1.00247 0.93746 1.21477 0.91285 0.87190 0.96338 1.67127 1.14818 1.12152 1.30881 1.19254 0.89878 0.86410 0.86831 1.84669 1.39776 1.12143 1.92202 1.21309 1.02790 0.97862 0.92433 1.22867 0.92501 0.90189 0.96263 1.88109 1.69555 1.50705 1.22185 1.21607 1.03733 0.86447 0.85270 1.23451 0.96107 1.00469 0.92711 1.22140 0.88276 0.93728 0.91490 1.46481 1.16975 1.72297 1.01244 1.19437 0.97297 1.35717 0.83897 0.89822 1.25636 0.98311 1.01440 1.00706 1.70013 1.18805 1.47014 1.24453 0.85076 0.77269 0.77934 0.79134 1.21826 1.21951 1.18922 1.22685 0.94746 0.98598 0.83682 0.91807 0.93201 0.90587 0.74994 0.80277 0.72161 0.88205 0.87277 0.85294 0.91033 0.85276 0.88977 0.87231 0.97231 0.93633 0.94250 0.91544 0.95161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 9.43 71.98 0.68 -3.40 16 2 C 0.16 4.74 2.29 44.99 0.10 4.84 16 3 H 0.06 2.20 7.49 -2.39 -0.02 2.18 16 4 N -0.70 -16.00 4.91 -445.70 -2.19 -18.19 16 5 C 0.56 15.18 7.74 86.69 0.67 15.85 16 6 O -0.56 -19.64 14.87 16.73 0.25 -19.40 16 7 C -0.22 -4.83 5.90 -19.94 -0.12 -4.95 16 8 C -0.01 -0.12 9.27 22.75 0.21 0.09 16 9 C -0.19 -2.64 5.80 -19.85 -0.12 -2.75 16 10 C 0.17 3.04 6.68 42.51 0.28 3.32 16 11 N -0.53 -12.32 10.23 -295.96 -3.03 -15.35 16 12 C 0.36 9.03 7.77 85.17 0.66 9.69 16 13 O -0.48 -12.80 11.68 -66.44 -0.78 -13.58 16 14 C -0.11 -1.16 6.23 29.89 0.19 -0.98 16 15 C 0.06 0.43 6.83 71.96 0.49 0.92 16 16 O -0.39 -4.50 10.81 -148.98 -1.61 -6.11 16 17 C 0.11 0.94 6.66 71.19 0.47 1.41 16 18 C -0.11 -3.53 3.35 -10.13 -0.03 -3.57 16 19 C 0.17 7.83 7.02 86.44 0.61 8.44 16 20 N -0.64 -32.25 3.70 -716.09 -2.65 -34.90 16 21 C -0.24 -13.03 10.69 84.03 0.90 -12.13 16 22 H 0.08 4.41 7.84 -2.91 -0.02 4.39 16 23 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 24 N -0.95 -57.45 11.43 21.65 0.25 -57.20 16 25 Si 0.98 45.27 29.56 68.60 2.03 47.30 16 26 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 27 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 28 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 29 C 0.13 4.74 8.38 86.49 0.73 5.47 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.41 6.51 6.71 -92.71 -0.62 5.89 16 34 H 0.18 1.31 6.51 -2.91 -0.02 1.29 16 35 H 0.42 7.99 9.06 -74.06 -0.67 7.32 16 36 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.13 0.38 8.14 -2.38 -0.02 0.36 16 39 H 0.07 0.39 8.07 -2.39 -0.02 0.37 16 40 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 42 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 43 H 0.01 0.48 8.04 -2.39 -0.02 0.47 16 44 H 0.05 2.35 7.20 -2.39 -0.02 2.33 16 45 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 46 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.03 1.16 8.10 -2.39 -0.02 1.14 16 Total: -1.00 -80.20 386.81 -1.81 -82.01 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -0.27 Total: 16.55 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: 6.19 Total: 18.86 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -7.62 Total: -125.65 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -2.14 Total: -39.08 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -80.20 -1.81 -82.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970719506.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.448 kcal (2) G-P(sol) polarization free energy of solvation -80.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds