Wall clock time and date at job start Wed Apr 1 2020 04:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.87488 * 2 1 4 4 C 1.54324 * 109.88286 * 238.97840 * 2 1 3 5 5 C 1.55157 * 102.94654 * 218.23922 * 4 2 1 6 6 H 1.08991 * 111.00622 * 153.57669 * 5 4 2 7 7 N 1.46499 * 111.00240 * 277.43317 * 5 4 2 8 8 C 1.36936 * 119.99801 * 198.64594 * 7 5 4 9 9 H 1.08000 * 120.00583 * 0.02562 * 8 7 5 10 10 C 1.38819 * 119.99844 * 179.97438 * 8 7 5 11 11 N 1.31616 * 120.00267 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99743 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46931 * 60.00339 * 12 10 8 14 14 H 1.48497 * 109.47118 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47135 * 300.00200 * 12 10 8 16 16 C 1.54911 * 101.57889 * 35.49977 * 5 4 2 17 17 N 1.47296 * 109.99899 * 121.05922 * 2 1 3 18 18 C 1.34772 * 125.79139 * 298.43099 * 17 2 1 19 19 O 1.21556 * 119.99719 * 181.49924 * 18 17 2 20 20 C 1.47855 * 120.00351 * 1.49485 * 18 17 2 21 21 C 1.39601 * 120.11527 * 351.02689 * 20 18 17 22 22 C 1.37966 * 119.96266 * 179.76400 * 21 20 18 23 23 C 1.38286 * 120.20893 * 0.51528 * 22 21 20 24 24 C 1.38813 * 120.23463 * 359.74137 * 23 22 21 25 25 O 1.35914 * 119.98071 * 179.97438 * 24 23 22 26 26 C 1.42898 * 117.00165 * 0.02562 * 25 24 23 27 27 C 1.50699 * 109.47311 * 180.02562 * 26 25 24 28 28 N 1.34770 * 120.00309 * 180.02562 * 27 26 25 29 29 O 1.21285 * 119.99418 * 0.02562 * 27 26 25 30 30 C 1.38488 * 120.03451 * 359.97438 * 24 23 22 31 31 H 1.09004 * 109.46963 * 168.86174 * 1 2 3 32 32 H 1.08993 * 109.47264 * 288.86467 * 1 2 3 33 33 H 1.09004 * 109.46767 * 48.86351 * 1 2 3 34 34 H 1.09006 * 110.71783 * 99.87575 * 4 2 1 35 35 H 1.09003 * 110.72316 * 336.60095 * 4 2 1 36 36 H 0.97003 * 120.00495 * 18.64560 * 7 5 4 37 37 H 0.97000 * 120.00502 * 179.97438 * 11 10 8 38 38 H 1.09003 * 110.36550 * 81.83333 * 16 5 4 39 39 H 1.09000 * 110.36563 * 204.04276 * 16 5 4 40 40 H 1.08002 * 120.01820 * 359.97438 * 21 20 18 41 41 H 1.08003 * 119.89735 * 180.27345 * 22 21 20 42 42 H 1.08000 * 119.88359 * 179.71712 * 23 22 21 43 43 H 1.08997 * 109.47243 * 300.00253 * 26 25 24 44 44 H 1.09000 * 109.46654 * 60.00295 * 26 25 24 45 45 H 0.96998 * 120.00082 * 0.02562 * 28 27 26 46 46 H 0.96999 * 120.00200 * 180.02562 * 28 27 26 47 47 H 1.08002 * 120.10489 * 179.97438 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0549 -0.7479 -1.2437 5 6 3.2900 -1.5103 -0.6953 6 1 3.4887 -2.4063 -1.2831 7 7 4.4679 -0.6403 -0.6534 8 6 5.7206 -1.1875 -0.5732 9 1 5.8404 -2.2604 -0.5413 10 6 6.8369 -0.3632 -0.5340 11 7 6.6912 0.9443 -0.5734 12 14 8.5458 -1.1097 -0.4253 13 1 8.7826 -1.9782 -1.6064 14 1 9.5592 -0.0245 -0.3985 15 1 8.6542 -1.9197 0.8146 16 6 2.8195 -1.8770 0.7343 17 7 2.0338 -0.7141 1.1857 18 6 1.8142 -0.3645 2.4686 19 8 2.3053 -1.0172 3.3689 20 6 0.9762 0.8128 2.7811 21 6 0.5661 1.6716 1.7598 22 6 -0.2199 2.7666 2.0543 23 6 -0.5947 3.0230 3.3605 24 6 -0.1873 2.1776 4.3833 25 8 -0.5582 2.4347 5.6653 26 6 -1.3677 3.5913 5.8869 27 6 -1.6768 3.7140 7.3568 28 7 -2.4321 4.7369 7.8035 29 8 -1.2459 2.8920 8.1377 30 6 0.5970 1.0723 4.0982 31 1 -0.3633 -1.0083 -0.1985 32 1 -0.3633 0.3323 0.9724 33 1 -0.3633 0.6761 -0.7740 34 1 2.3505 -0.0434 -2.0211 35 1 1.3062 -1.4458 -1.6186 36 1 4.3606 0.3233 -0.6824 37 1 7.4711 1.5204 -0.5456 38 1 2.1955 -2.7704 0.7108 39 1 3.6778 -2.0318 1.3881 40 1 0.8612 1.4771 0.7392 41 1 -0.5402 3.4279 1.2627 42 1 -1.2063 3.8842 3.5856 43 1 -0.8312 4.4796 5.5535 44 1 -2.2976 3.4966 5.3263 45 1 -2.7770 5.3940 7.1789 46 1 -2.6308 4.8160 8.7496 47 1 0.9149 0.4141 4.8932 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988913681.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:49 Heat of formation + Delta-G solvation = -17.910133 kcal Electronic energy + Delta-G solvation = -30431.934551 eV Core-core repulsion = 26196.478035 eV Total energy + Delta-G solvation = -4235.456516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -40.98049 -40.24079 -39.18123 -37.54134 -37.10123 -34.33138 -34.22497 -32.13866 -31.44322 -31.14278 -30.23319 -28.69788 -28.00548 -25.88415 -24.18286 -23.50436 -22.53893 -22.06221 -21.09234 -20.11322 -19.47992 -18.28968 -18.10735 -17.29689 -16.95998 -16.72934 -16.68729 -16.12292 -15.78534 -15.23153 -14.96633 -14.70793 -14.53322 -14.20789 -14.08045 -13.79818 -13.60225 -13.39723 -13.22193 -13.07429 -12.96339 -12.52595 -12.37408 -11.99616 -11.76671 -11.56161 -11.33192 -11.20301 -10.92665 -10.85625 -10.71472 -10.52558 -10.39725 -10.33948 -10.24158 -10.04627 -9.70939 -9.59851 -9.10962 -9.00953 -8.26186 -8.22127 -7.01626 -5.80269 -3.09960 0.80638 1.30429 2.09270 2.28631 3.02517 3.22805 3.44537 3.49554 3.50243 3.52182 3.86549 4.23763 4.45046 4.52908 4.55720 4.56673 4.66162 4.72636 4.83993 4.97949 5.03508 5.18014 5.33733 5.36907 5.45514 5.52203 5.63475 5.71043 5.76927 5.82818 5.88435 6.06111 6.07541 6.21207 6.21748 6.25466 6.28299 6.31758 6.39387 6.42304 6.57827 6.70649 6.72933 6.86164 7.14121 7.67766 7.72504 7.90249 8.37355 8.51265 9.49379 10.03101 10.37540 11.41905 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014664 B = 0.002392 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.922267 B =11701.353922 C =12520.175499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.119 3.881 3 H 0.088 0.912 4 C -0.136 4.136 5 C 0.167 3.833 6 H 0.073 0.927 7 N -0.711 5.711 8 C -0.245 4.245 9 H 0.072 0.928 10 C -0.009 4.009 11 N -0.931 5.931 12 Si 0.908 3.092 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.285 1.285 16 C 0.078 3.922 17 N -0.590 5.590 18 C 0.570 3.430 19 O -0.538 6.538 20 C -0.089 4.089 21 C -0.146 4.146 22 C -0.098 4.098 23 C -0.188 4.188 24 C 0.109 3.891 25 O -0.289 6.289 26 C 0.040 3.960 27 C 0.519 3.481 28 N -0.852 5.852 29 O -0.515 6.515 30 C -0.086 4.086 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.054 0.946 39 H 0.084 0.916 40 H 0.173 0.827 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.403 0.597 46 H 0.408 0.592 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.203 9.797 4.861 26.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.015 3.985 3 H 0.105 0.895 4 C -0.175 4.175 5 C 0.055 3.945 6 H 0.091 0.909 7 N -0.351 5.351 8 C -0.376 4.376 9 H 0.090 0.910 10 C -0.205 4.205 11 N -0.578 5.578 12 Si 0.739 3.261 13 H -0.212 1.212 14 H -0.217 1.217 15 H -0.211 1.211 16 C -0.047 4.047 17 N -0.322 5.322 18 C 0.359 3.641 19 O -0.416 6.416 20 C -0.093 4.093 21 C -0.164 4.164 22 C -0.117 4.117 23 C -0.207 4.207 24 C 0.064 3.936 25 O -0.202 6.202 26 C -0.039 4.039 27 C 0.302 3.698 28 N -0.419 5.419 29 O -0.388 6.388 30 C -0.105 4.105 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.102 0.898 40 H 0.189 0.811 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.231 0.769 46 H 0.240 0.760 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -23.327 8.606 5.940 25.564 hybrid contribution 0.503 0.757 0.144 0.920 sum -22.824 9.363 6.084 25.409 Atomic orbital electron populations 1.22976 0.95174 1.02945 1.03485 1.21982 0.93469 0.96765 0.86257 0.89458 1.23057 0.98417 1.00052 0.95948 1.21372 0.86888 0.94456 0.91767 0.90946 1.42289 1.00279 1.05058 1.87472 1.19176 0.83299 0.91864 1.43294 0.91000 1.24749 0.97991 0.95342 1.02446 1.69639 1.29248 1.01920 1.57003 0.86260 0.84140 0.77788 0.77949 1.21188 1.21709 1.21133 1.23334 0.94858 0.86394 1.00112 1.48278 1.51136 1.28771 1.03980 1.17734 0.80775 0.83985 0.81623 1.90772 1.51265 1.54447 1.45145 1.19725 0.99641 0.96683 0.93217 1.22944 0.97341 0.93886 1.02179 1.20887 0.97987 0.97057 0.95722 1.21355 1.04859 1.00879 0.93567 1.18747 0.96771 0.95331 0.82709 1.86173 1.66190 1.43515 1.24314 1.22412 0.96838 0.90104 0.94571 1.20092 0.78311 0.81407 0.90021 1.43648 1.55611 1.29341 1.13275 1.90839 1.50221 1.40455 1.57279 1.20456 0.97261 0.96232 0.96555 0.91989 0.90133 0.91072 0.89538 0.90407 0.78146 0.93392 0.92757 0.89778 0.81084 0.85102 0.85451 0.88758 0.88833 0.76890 0.75969 0.83836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.97 7.84 37.16 0.29 -1.68 16 2 C 0.12 1.63 2.72 -66.80 -0.18 1.45 16 3 H 0.09 1.23 6.24 -51.93 -0.32 0.91 16 4 C -0.14 -1.88 6.04 -24.90 -0.15 -2.03 16 5 C 0.17 3.07 3.69 -65.78 -0.24 2.83 16 6 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 7 N -0.71 -16.96 5.27 -51.35 -0.27 -17.23 16 8 C -0.25 -6.66 9.98 -15.06 -0.15 -6.81 16 9 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 10 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 11 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 12 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 16 C 0.08 1.46 6.60 -2.53 -0.02 1.44 16 17 N -0.59 -10.33 3.08 -165.34 -0.51 -10.84 16 18 C 0.57 10.94 7.66 -12.33 -0.09 10.85 16 19 O -0.54 -12.34 16.63 5.32 0.09 -12.25 16 20 C -0.09 -1.41 5.34 -104.99 -0.56 -1.97 16 21 C -0.15 -1.83 6.20 -39.17 -0.24 -2.07 16 22 C -0.10 -0.98 10.03 -39.66 -0.40 -1.38 16 23 C -0.19 -1.82 9.03 -39.35 -0.36 -2.18 16 24 C 0.11 1.39 6.68 -39.28 -0.26 1.13 16 25 O -0.29 -3.68 9.67 -39.38 -0.38 -4.06 16 26 C 0.04 0.29 5.22 36.01 0.19 0.48 16 27 C 0.52 4.54 8.18 -10.99 -0.09 4.45 16 28 N -0.85 -3.12 8.87 31.22 0.28 -2.84 16 29 O -0.51 -7.50 17.34 -14.36 -0.25 -7.75 16 30 C -0.09 -1.33 9.53 -39.02 -0.37 -1.70 16 31 H 0.06 0.64 7.89 -51.93 -0.41 0.23 16 32 H 0.08 0.90 4.22 -52.01 -0.22 0.68 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.08 0.88 7.68 -51.93 -0.40 0.48 16 36 H 0.38 9.77 7.82 -40.82 -0.32 9.45 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.89 8.02 -51.93 -0.42 1.47 16 40 H 0.17 2.01 2.17 -54.43 -0.12 1.89 16 41 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 42 H 0.13 0.76 6.28 -52.49 -0.33 0.43 16 43 H 0.09 0.45 7.66 -51.93 -0.40 0.06 16 44 H 0.09 0.41 7.66 -51.93 -0.40 0.01 16 45 H 0.40 0.01 8.83 -40.82 -0.36 -0.35 16 46 H 0.41 1.24 8.93 -40.82 -0.36 0.88 16 47 H 0.14 2.41 7.68 -52.49 -0.40 2.01 16 LS Contribution 382.83 15.07 5.77 5.77 Total: -1.00 -38.46 382.83 -8.42 -46.88 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.12 Total: 9.45 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -2.73 Total: 2.47 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.22 Total: -57.99 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.54 Total: -24.06 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.46 -8.42 -46.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988913681.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.974 kcal (2) G-P(sol) polarization free energy of solvation -38.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds