Wall clock time and date at job start Wed Apr 1 2020 04:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.87488 * 2 1 4 4 C 1.54324 * 109.88286 * 238.97840 * 2 1 3 5 5 C 1.55157 * 102.94654 * 218.23922 * 4 2 1 6 6 H 1.08991 * 111.00622 * 153.57669 * 5 4 2 7 7 N 1.46499 * 111.00240 * 277.43317 * 5 4 2 8 8 C 1.36936 * 119.99801 * 198.64594 * 7 5 4 9 9 H 1.08000 * 120.00583 * 0.02562 * 8 7 5 10 10 C 1.38819 * 119.99844 * 179.97438 * 8 7 5 11 11 N 1.31616 * 120.00267 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99743 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46931 * 60.00339 * 12 10 8 14 14 H 1.48497 * 109.47118 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47135 * 300.00200 * 12 10 8 16 16 C 1.54911 * 101.57889 * 35.49977 * 5 4 2 17 17 N 1.47296 * 109.99899 * 121.05922 * 2 1 3 18 18 C 1.34772 * 125.79139 * 298.43099 * 17 2 1 19 19 O 1.21556 * 119.99719 * 181.49924 * 18 17 2 20 20 C 1.47855 * 120.00351 * 1.49485 * 18 17 2 21 21 C 1.39601 * 120.11527 * 351.02689 * 20 18 17 22 22 C 1.37966 * 119.96266 * 179.76400 * 21 20 18 23 23 C 1.38286 * 120.20893 * 0.51528 * 22 21 20 24 24 C 1.38813 * 120.23463 * 359.74137 * 23 22 21 25 25 O 1.35914 * 119.98071 * 179.97438 * 24 23 22 26 26 C 1.42898 * 117.00165 * 0.02562 * 25 24 23 27 27 C 1.50699 * 109.47311 * 180.02562 * 26 25 24 28 28 N 1.34770 * 120.00309 * 180.02562 * 27 26 25 29 29 O 1.21285 * 119.99418 * 0.02562 * 27 26 25 30 30 C 1.38488 * 120.03451 * 359.97438 * 24 23 22 31 31 H 1.09004 * 109.46963 * 168.86174 * 1 2 3 32 32 H 1.08993 * 109.47264 * 288.86467 * 1 2 3 33 33 H 1.09004 * 109.46767 * 48.86351 * 1 2 3 34 34 H 1.09006 * 110.71783 * 99.87575 * 4 2 1 35 35 H 1.09003 * 110.72316 * 336.60095 * 4 2 1 36 36 H 0.97003 * 120.00495 * 18.64560 * 7 5 4 37 37 H 0.97000 * 120.00502 * 179.97438 * 11 10 8 38 38 H 1.09003 * 110.36550 * 81.83333 * 16 5 4 39 39 H 1.09000 * 110.36563 * 204.04276 * 16 5 4 40 40 H 1.08002 * 120.01820 * 359.97438 * 21 20 18 41 41 H 1.08003 * 119.89735 * 180.27345 * 22 21 20 42 42 H 1.08000 * 119.88359 * 179.71712 * 23 22 21 43 43 H 1.08997 * 109.47243 * 300.00253 * 26 25 24 44 44 H 1.09000 * 109.46654 * 60.00295 * 26 25 24 45 45 H 0.96998 * 120.00082 * 0.02562 * 28 27 26 46 46 H 0.96999 * 120.00200 * 180.02562 * 28 27 26 47 47 H 1.08002 * 120.10489 * 179.97438 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0549 -0.7479 -1.2437 5 6 3.2900 -1.5103 -0.6953 6 1 3.4887 -2.4063 -1.2831 7 7 4.4679 -0.6403 -0.6534 8 6 5.7206 -1.1875 -0.5732 9 1 5.8404 -2.2604 -0.5413 10 6 6.8369 -0.3632 -0.5340 11 7 6.6912 0.9443 -0.5734 12 14 8.5458 -1.1097 -0.4253 13 1 8.7826 -1.9782 -1.6064 14 1 9.5592 -0.0245 -0.3985 15 1 8.6542 -1.9197 0.8146 16 6 2.8195 -1.8770 0.7343 17 7 2.0338 -0.7141 1.1857 18 6 1.8142 -0.3645 2.4686 19 8 2.3053 -1.0172 3.3689 20 6 0.9762 0.8128 2.7811 21 6 0.5661 1.6716 1.7598 22 6 -0.2199 2.7666 2.0543 23 6 -0.5947 3.0230 3.3605 24 6 -0.1873 2.1776 4.3833 25 8 -0.5582 2.4347 5.6653 26 6 -1.3677 3.5913 5.8869 27 6 -1.6768 3.7140 7.3568 28 7 -2.4321 4.7369 7.8035 29 8 -1.2459 2.8920 8.1377 30 6 0.5970 1.0723 4.0982 31 1 -0.3633 -1.0083 -0.1985 32 1 -0.3633 0.3323 0.9724 33 1 -0.3633 0.6761 -0.7740 34 1 2.3505 -0.0434 -2.0211 35 1 1.3062 -1.4458 -1.6186 36 1 4.3606 0.3233 -0.6824 37 1 7.4711 1.5204 -0.5456 38 1 2.1955 -2.7704 0.7108 39 1 3.6778 -2.0318 1.3881 40 1 0.8612 1.4771 0.7392 41 1 -0.5402 3.4279 1.2627 42 1 -1.2063 3.8842 3.5856 43 1 -0.8312 4.4796 5.5535 44 1 -2.2976 3.4966 5.3263 45 1 -2.7770 5.3940 7.1789 46 1 -2.6308 4.8160 8.7496 47 1 0.9149 0.4141 4.8932 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988913681.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:48 Heat of formation + Delta-G solvation = -48.911361 kcal Electronic energy + Delta-G solvation = -30433.278865 eV Core-core repulsion = 26196.478035 eV Total energy + Delta-G solvation = -4236.800830 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.07161 -41.15808 -40.06120 -38.92074 -38.17378 -36.04449 -34.81177 -33.72691 -32.68171 -32.21824 -31.51430 -29.86744 -28.99479 -27.10584 -25.81582 -24.95537 -23.47411 -23.11889 -21.84938 -21.47296 -20.63586 -19.39374 -19.21157 -18.65878 -17.93583 -17.58560 -17.38400 -17.19470 -17.08706 -16.45315 -16.26207 -16.15538 -15.62818 -15.35547 -15.32404 -15.06066 -14.86281 -14.55148 -14.48668 -14.35127 -13.93582 -13.63606 -13.45205 -13.22694 -13.15774 -12.86767 -12.69595 -12.49277 -12.29545 -12.26672 -12.16692 -12.02478 -11.73451 -11.46813 -11.42821 -11.14252 -11.08300 -10.98309 -10.76352 -10.12786 -9.66997 -9.16008 -8.98935 -7.96521 -5.23763 -0.22032 0.37969 1.44539 1.47120 1.48157 1.52821 1.60592 1.79259 2.03250 2.54187 2.78658 2.83571 3.31611 3.46020 3.60133 3.72037 3.86104 3.88683 3.91385 4.02723 4.07815 4.11418 4.13580 4.19823 4.32265 4.35407 4.50136 4.50833 4.71098 4.76323 4.84016 4.88404 4.97577 5.06743 5.16758 5.19040 5.22745 5.31106 5.37232 5.41583 5.48386 5.52499 5.63612 5.81603 6.25084 6.26232 6.44352 6.53588 7.08070 7.25989 7.33319 8.08088 8.30172 9.26275 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014664 B = 0.002392 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.922267 B =11701.353922 C =12520.175499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.113 3.887 3 H 0.086 0.914 4 C -0.119 4.119 5 C 0.158 3.842 6 H 0.082 0.918 7 N -0.722 5.722 8 C -0.241 4.241 9 H 0.075 0.925 10 C -0.073 4.073 11 N -0.965 5.965 12 Si 0.966 3.034 13 H -0.271 1.271 14 H -0.296 1.296 15 H -0.289 1.289 16 C 0.081 3.919 17 N -0.591 5.591 18 C 0.555 3.445 19 O -0.600 6.600 20 C -0.114 4.114 21 C -0.144 4.144 22 C -0.084 4.084 23 C -0.165 4.165 24 C 0.107 3.893 25 O -0.325 6.325 26 C 0.031 3.969 27 C 0.514 3.486 28 N -0.823 5.823 29 O -0.589 6.589 30 C -0.121 4.121 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.375 0.625 37 H 0.250 0.750 38 H 0.078 0.922 39 H 0.032 0.968 40 H 0.182 0.818 41 H 0.180 0.820 42 H 0.180 0.820 43 H 0.129 0.871 44 H 0.135 0.865 45 H 0.425 0.575 46 H 0.413 0.587 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.834 12.532 2.290 30.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.011 3.989 3 H 0.104 0.896 4 C -0.157 4.157 5 C 0.047 3.953 6 H 0.100 0.900 7 N -0.360 5.360 8 C -0.373 4.373 9 H 0.093 0.907 10 C -0.265 4.265 11 N -0.615 5.615 12 Si 0.796 3.204 13 H -0.197 1.197 14 H -0.222 1.222 15 H -0.216 1.216 16 C -0.045 4.045 17 N -0.322 5.322 18 C 0.346 3.654 19 O -0.483 6.483 20 C -0.117 4.117 21 C -0.161 4.161 22 C -0.101 4.101 23 C -0.183 4.183 24 C 0.062 3.938 25 O -0.239 6.239 26 C -0.047 4.047 27 C 0.298 3.702 28 N -0.390 5.390 29 O -0.468 6.468 30 C -0.141 4.141 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.128 0.872 34 H 0.112 0.888 35 H 0.133 0.867 36 H 0.207 0.793 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.051 0.949 40 H 0.198 0.802 41 H 0.197 0.803 42 H 0.197 0.803 43 H 0.147 0.853 44 H 0.152 0.848 45 H 0.257 0.743 46 H 0.246 0.754 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -27.049 11.377 3.306 29.530 hybrid contribution 1.481 -0.042 1.005 1.790 sum -25.568 11.336 4.310 28.299 Atomic orbital electron populations 1.22894 0.91737 1.04392 1.04505 1.22298 0.96117 0.96122 0.84358 0.89638 1.23036 0.96557 1.00289 0.95855 1.21648 0.87055 0.94861 0.91699 0.89983 1.42431 1.00988 1.05172 1.87448 1.19564 0.84846 0.92098 1.40796 0.90690 1.25483 1.01391 0.95859 1.03805 1.69775 1.29515 1.02924 1.59327 0.85320 0.80212 0.76897 0.77992 1.19684 1.22208 1.21585 1.23165 0.93943 0.88268 0.99082 1.48440 1.50443 1.28549 1.04744 1.18517 0.80687 0.84687 0.81489 1.90714 1.53928 1.56703 1.46942 1.19477 1.01155 0.96699 0.94340 1.23073 0.97514 0.94082 1.01477 1.21436 0.95715 0.95909 0.97064 1.21891 1.03286 1.00810 0.92327 1.18746 0.96326 0.94878 0.83802 1.86135 1.67264 1.46031 1.24486 1.22868 0.98373 0.89529 0.93923 1.20539 0.77925 0.81288 0.90459 1.43451 1.53373 1.28043 1.14143 1.90818 1.53523 1.43441 1.59040 1.20325 0.99986 0.97960 0.95847 0.91443 0.90688 0.87231 0.88824 0.86673 0.79299 0.94113 0.90358 0.94920 0.80209 0.80317 0.80282 0.85313 0.84777 0.74286 0.75413 0.87719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 7.84 71.98 0.56 -2.47 16 2 C 0.11 2.89 2.72 45.29 0.12 3.01 16 3 H 0.09 2.25 6.24 -2.39 -0.01 2.24 16 4 C -0.12 -2.97 6.04 31.78 0.19 -2.78 16 5 C 0.16 5.73 3.69 46.38 0.17 5.90 16 6 H 0.08 2.84 8.13 -2.39 -0.02 2.82 16 7 N -0.72 -34.99 5.27 -316.38 -1.67 -36.66 16 8 C -0.24 -13.35 9.98 84.04 0.84 -12.51 16 9 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 10 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 11 N -0.97 -59.15 13.06 21.65 0.28 -58.87 16 12 Si 0.97 47.34 29.55 68.60 2.03 49.37 16 13 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 14 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 15 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 16 C 0.08 3.13 6.60 86.86 0.57 3.71 16 17 N -0.59 -21.30 3.08 -795.31 -2.45 -23.74 16 18 C 0.56 22.92 7.66 86.79 0.66 23.58 16 19 O -0.60 -30.63 16.63 -3.89 -0.06 -30.69 16 20 C -0.11 -3.72 5.34 -20.10 -0.11 -3.83 16 21 C -0.14 -3.27 6.20 22.53 0.14 -3.13 16 22 C -0.08 -1.22 10.03 22.22 0.22 -1.00 16 23 C -0.16 -2.40 9.03 22.42 0.20 -2.20 16 24 C 0.11 2.64 6.68 22.47 0.15 2.79 16 25 O -0.33 -8.16 9.67 -73.54 -0.71 -8.87 16 26 C 0.03 0.35 5.22 71.24 0.37 0.72 16 27 C 0.51 8.31 8.18 87.66 0.72 9.03 16 28 N -0.82 -3.89 8.87 -173.54 -1.54 -5.43 16 29 O -0.59 -17.88 17.34 15.99 0.28 -17.60 16 30 C -0.12 -4.05 9.53 22.63 0.22 -3.83 16 31 H 0.07 1.11 7.89 -2.39 -0.02 1.09 16 32 H 0.07 1.44 4.22 -2.47 -0.01 1.43 16 33 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 35 H 0.11 2.07 7.68 -2.39 -0.02 2.05 16 36 H 0.37 19.40 7.82 -92.71 -0.72 18.67 16 37 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 38 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.03 1.58 8.02 -2.39 -0.02 1.56 16 40 H 0.18 3.67 2.17 -4.74 -0.01 3.66 16 41 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 42 H 0.18 0.73 6.28 -2.91 -0.02 0.71 16 43 H 0.13 0.58 7.66 -2.39 -0.02 0.56 16 44 H 0.13 0.43 7.66 -2.39 -0.02 0.42 16 45 H 0.42 -1.72 8.83 -92.71 -0.82 -2.54 16 46 H 0.41 1.73 8.93 -92.71 -0.83 0.90 16 47 H 0.10 4.14 7.68 -2.91 -0.02 4.12 16 Total: -1.00 -95.97 382.83 0.35 -95.62 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: -1.31 Total: 23.65 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 5.51 Total: 13.24 kcal Atomic # 7 Polarization: -119.33 SS G_CDS: -5.37 Total: -124.70 kcal Atomic # 8 Polarization: -56.67 SS G_CDS: -0.50 Total: -57.17 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -95.97 0.35 -95.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988913681.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.704 kcal (2) G-P(sol) polarization free energy of solvation -95.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds