Wall clock time and date at job start Wed Apr 1 2020 05:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.91124 * 2 1 4 4 C 1.54906 * 111.00208 * 236.09775 * 2 1 3 5 5 N 1.47429 * 104.83275 * 204.91537 * 4 2 1 6 6 C 1.34773 * 125.64951 * 204.16418 * 5 4 2 7 7 O 1.21589 * 119.99828 * 355.14398 * 6 5 4 8 8 C 1.47529 * 119.99701 * 175.14220 * 6 5 4 9 9 C 1.39708 * 120.19237 * 46.97568 * 8 6 5 10 10 C 1.37795 * 119.90339 * 179.71816 * 9 8 6 11 11 C 1.38536 * 120.30224 * 0.58104 * 10 9 8 12 12 C 1.38063 * 120.39332 * 359.69229 * 11 10 9 13 13 C 1.38705 * 120.08157 * 0.02562 * 12 11 10 14 14 O 1.35648 * 120.14815 * 180.02562 * 13 12 11 15 15 C 1.42901 * 117.00213 * 359.97438 * 14 13 12 16 16 C 1.50699 * 109.47257 * 180.02562 * 15 14 13 17 17 N 1.34774 * 120.00123 * 179.97438 * 16 15 14 18 18 O 1.21285 * 119.99758 * 359.97438 * 16 15 14 19 19 C 1.47022 * 108.69735 * 24.12790 * 5 4 2 20 20 C 1.54317 * 107.27700 * 358.94410 * 19 5 4 21 21 H 1.09004 * 110.71777 * 219.26722 * 20 19 5 22 22 N 1.46497 * 110.72348 * 96.17080 * 20 19 5 23 23 C 1.36932 * 120.00297 * 86.45274 * 22 20 19 24 24 H 1.07998 * 119.99767 * 0.02562 * 23 22 20 25 25 C 1.38805 * 120.00268 * 179.97438 * 23 22 20 26 26 N 1.31623 * 120.00083 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00018 * 180.27614 * 25 23 22 28 28 H 1.48500 * 109.47270 * 269.72453 * 27 25 23 29 29 H 1.48497 * 109.47336 * 29.72715 * 27 25 23 30 30 H 1.48507 * 109.46957 * 149.72754 * 27 25 23 31 31 H 1.08998 * 109.46965 * 296.09745 * 1 2 3 32 32 H 1.08995 * 109.47335 * 56.09783 * 1 2 3 33 33 H 1.09004 * 109.46922 * 176.10341 * 1 2 3 34 34 H 1.09004 * 110.36820 * 86.07442 * 4 2 1 35 35 H 1.09000 * 110.45992 * 323.79954 * 4 2 1 36 36 H 1.07996 * 120.04284 * 0.02562 * 9 8 6 37 37 H 1.08001 * 119.84212 * 180.27404 * 10 9 8 38 38 H 1.08003 * 119.80482 * 179.71629 * 11 10 9 39 39 H 1.07998 * 119.95941 * 180.02562 * 12 11 10 40 40 H 1.08999 * 109.47120 * 300.00176 * 15 14 13 41 41 H 1.09001 * 109.46856 * 60.00184 * 15 14 13 42 42 H 0.96997 * 120.00007 * 0.02562 * 17 16 15 43 43 H 0.97001 * 120.00373 * 179.97438 * 17 16 15 44 44 H 1.09007 * 109.88278 * 239.51912 * 19 5 4 45 45 H 1.09005 * 110.00871 * 118.43812 * 19 5 4 46 46 H 0.97001 * 119.99341 * 266.45373 * 22 20 19 47 47 H 0.96998 * 119.99945 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4272 -1.2431 -0.7734 6 6 4.4481 -1.5603 -1.5940 7 8 4.2761 -1.5832 -2.7975 8 6 5.7742 -1.8798 -1.0321 9 6 5.8869 -2.7631 0.0444 10 6 7.1290 -3.0618 0.5608 11 6 8.2669 -2.4808 0.0252 12 6 8.1694 -1.6019 -1.0351 13 6 6.9277 -1.2943 -1.5712 14 8 6.8304 -0.4313 -2.6133 15 6 8.0489 0.1258 -3.1103 16 6 7.7455 1.0543 -4.2578 17 7 8.7485 1.6983 -4.8869 18 8 6.5987 1.2221 -4.6151 19 6 3.4674 -1.2741 0.6960 20 6 2.0862 -0.8079 1.2022 21 1 2.1921 -0.1725 2.0815 22 7 1.2269 -1.9574 1.4963 23 6 1.2816 -2.5563 2.7265 24 1 1.9580 -2.1810 3.4801 25 6 0.4670 -3.6451 3.0053 26 7 -0.3577 -4.1022 2.0870 27 14 0.5362 -4.4572 4.6861 28 1 1.5497 -5.5425 4.6701 29 1 0.9086 -3.4471 5.7089 30 1 -0.7948 -5.0276 5.0153 31 1 -0.3633 0.4521 0.9229 32 1 -0.3634 0.5732 -0.8529 33 1 -0.3633 -1.0253 -0.0698 34 1 2.1559 -0.1720 -2.0837 35 1 1.4524 -1.6704 -1.4042 36 1 5.0021 -3.2149 0.4680 37 1 7.2153 -3.7482 1.3902 38 1 9.2360 -2.7172 0.4391 39 1 9.0611 -1.1534 -1.4475 40 1 8.5452 0.6818 -2.3149 41 1 8.7014 -0.6766 -3.4545 42 1 9.6657 1.5638 -4.6013 43 1 8.5533 2.2957 -5.6258 44 1 4.2427 -0.5997 1.0599 45 1 3.6663 -2.2883 1.0423 46 1 0.6191 -2.2942 0.8194 47 1 -0.9267 -4.8633 2.2817 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054883397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:59 Heat of formation + Delta-G solvation = -54.737241 kcal Electronic energy + Delta-G solvation = -30940.906563 eV Core-core repulsion = 26703.853103 eV Total energy + Delta-G solvation = -4237.053459 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.79180 -39.78893 -39.00759 -37.43008 -37.12888 -34.09929 -33.86264 -32.51535 -31.22634 -30.45848 -30.32947 -28.48687 -27.64892 -26.14390 -24.07097 -23.49635 -22.59835 -21.81552 -20.97693 -19.63199 -19.19330 -18.30694 -17.91170 -17.51259 -16.81730 -16.67562 -16.57819 -16.07958 -15.49769 -15.31994 -14.83249 -14.56175 -14.49774 -14.18792 -14.15159 -13.92758 -13.55272 -13.08779 -12.94535 -12.79316 -12.78209 -12.40931 -12.08515 -11.86215 -11.76665 -11.55073 -11.36167 -11.20842 -11.05636 -10.91179 -10.71610 -10.37370 -10.26629 -10.23678 -10.11664 -9.86857 -9.63473 -9.49475 -9.11872 -8.95468 -8.37495 -8.06897 -7.03859 -5.81863 -3.11716 0.96000 1.28203 2.23092 2.38744 3.06625 3.39189 3.39971 3.45557 3.47510 3.49306 3.76740 4.32182 4.51542 4.54082 4.62428 4.63909 4.68713 4.88770 5.04196 5.22098 5.23308 5.25528 5.42007 5.44348 5.57977 5.67458 5.76498 5.87812 5.98957 6.03307 6.09460 6.18541 6.26258 6.31733 6.33892 6.37185 6.43344 6.44839 6.56150 6.62307 6.75545 6.82470 6.82961 6.99591 7.16615 7.65387 7.86390 8.01750 8.36106 8.61100 9.47892 10.03654 10.38824 11.40259 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014051 B = 0.002967 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.269807 B = 9436.351490 C =10932.501702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.114 4.114 3 H 0.078 0.922 4 C 0.117 3.883 5 N -0.603 5.603 6 C 0.574 3.426 7 O -0.530 6.530 8 C -0.145 4.145 9 C -0.046 4.046 10 C -0.159 4.159 11 C -0.063 4.063 12 C -0.221 4.221 13 C 0.169 3.831 14 O -0.271 6.271 15 C 0.037 3.963 16 C 0.516 3.484 17 N -0.854 5.854 18 O -0.505 6.505 19 C 0.070 3.930 20 C 0.172 3.828 21 H 0.069 0.931 22 N -0.712 5.712 23 C -0.245 4.245 24 H 0.072 0.928 25 C -0.009 4.009 26 N -0.929 5.929 27 Si 0.906 3.094 28 H -0.290 1.290 29 H -0.282 1.282 30 H -0.292 1.292 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.145 0.855 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.401 0.599 43 H 0.408 0.592 44 H 0.053 0.947 45 H 0.078 0.922 46 H 0.387 0.613 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.206 9.816 -7.257 25.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.134 4.134 3 H 0.096 0.904 4 C -0.005 4.005 5 N -0.336 5.336 6 C 0.362 3.638 7 O -0.408 6.408 8 C -0.149 4.149 9 C -0.064 4.064 10 C -0.177 4.177 11 C -0.081 4.081 12 C -0.240 4.240 13 C 0.122 3.878 14 O -0.182 6.182 15 C -0.042 4.042 16 C 0.299 3.701 17 N -0.421 5.421 18 O -0.377 6.377 19 C -0.056 4.056 20 C 0.060 3.940 21 H 0.087 0.913 22 N -0.354 5.354 23 C -0.376 4.376 24 H 0.090 0.910 25 C -0.206 4.206 26 N -0.576 5.576 27 Si 0.737 3.263 28 H -0.217 1.217 29 H -0.207 1.207 30 H -0.218 1.218 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.163 0.837 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.229 0.771 43 H 0.240 0.760 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.223 0.777 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 21.135 9.766 -7.962 24.606 hybrid contribution 0.701 -0.564 0.684 1.130 sum 21.836 9.202 -7.279 24.789 Atomic orbital electron populations 1.21540 0.93385 1.02949 1.00927 1.22609 0.96906 0.98497 0.95364 0.90360 1.22244 0.82736 0.98274 0.97245 1.48295 1.11756 1.65951 1.07618 1.17586 0.83019 0.77473 0.85685 1.90802 1.83457 1.52294 1.14207 1.19257 0.92063 1.03543 1.00057 1.21497 0.99080 0.93932 0.91889 1.21058 0.91970 1.02582 1.02099 1.21050 0.98837 0.94124 0.94138 1.21104 0.95602 1.05304 1.01990 1.18889 0.92992 0.89301 0.86658 1.86288 1.29857 1.56571 1.45449 1.22467 0.87868 0.97505 0.96360 1.20057 0.85658 0.80886 0.83536 1.43643 1.09745 1.50017 1.38681 1.90883 1.20365 1.62031 1.64424 1.23378 1.01372 1.02008 0.78805 1.21209 0.88335 0.89829 0.94632 0.91273 1.42465 1.45406 1.32786 1.14697 1.19216 1.18463 1.09342 0.90560 0.91024 1.24745 0.98996 0.98977 0.97845 1.69660 1.27285 1.27469 1.33209 0.86215 0.76874 0.79395 0.83807 1.21743 1.20729 1.21815 0.92147 0.93660 0.91197 0.91274 0.91231 0.83746 0.85071 0.85434 0.85176 0.88857 0.88774 0.77058 0.76019 0.92868 0.90344 0.77696 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.85 37.16 0.33 -1.82 16 2 C -0.11 -1.91 3.51 -88.47 -0.31 -2.22 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.12 2.15 6.33 -2.53 -0.02 2.14 16 5 N -0.60 -11.37 3.33 -171.74 -0.57 -11.94 16 6 C 0.57 11.46 7.14 -12.47 -0.09 11.38 16 7 O -0.53 -12.42 16.75 -5.69 -0.10 -12.52 16 8 C -0.15 -2.40 5.43 -104.84 -0.57 -2.97 16 9 C -0.05 -0.66 8.52 -39.19 -0.33 -0.99 16 10 C -0.16 -1.80 10.02 -39.63 -0.40 -2.19 16 11 C -0.06 -0.60 10.03 -39.54 -0.40 -1.00 16 12 C -0.22 -2.25 9.03 -39.47 -0.36 -2.61 16 13 C 0.17 2.42 6.67 -38.69 -0.26 2.16 16 14 O -0.27 -4.13 8.66 -45.13 -0.39 -4.53 16 15 C 0.04 0.34 5.22 36.01 0.19 0.52 16 16 C 0.52 5.49 8.18 -10.99 -0.09 5.40 16 17 N -0.85 -4.29 8.87 31.22 0.28 -4.01 16 18 O -0.50 -8.61 17.34 -14.36 -0.25 -8.86 16 19 C 0.07 1.25 5.37 -3.07 -0.02 1.23 16 20 C 0.17 3.25 3.37 -66.10 -0.22 3.03 16 21 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 22 N -0.71 -16.64 4.61 -51.66 -0.24 -16.87 16 23 C -0.24 -6.35 9.98 -15.06 -0.15 -6.50 16 24 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 25 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 26 N -0.93 -27.11 13.06 55.49 0.72 -26.39 16 27 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 30 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.32 6.38 -51.93 -0.33 0.99 16 34 H 0.07 1.26 8.09 -51.93 -0.42 0.84 16 35 H 0.07 1.36 7.99 -51.93 -0.41 0.95 16 36 H 0.14 2.19 5.89 -52.49 -0.31 1.88 16 37 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 38 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 39 H 0.13 0.84 6.30 -52.49 -0.33 0.51 16 40 H 0.09 0.53 7.66 -51.93 -0.40 0.13 16 41 H 0.09 0.57 7.66 -51.93 -0.40 0.17 16 42 H 0.40 0.45 8.83 -40.82 -0.36 0.09 16 43 H 0.41 1.79 8.93 -40.82 -0.36 1.42 16 44 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 45 H 0.08 1.49 5.87 -51.93 -0.30 1.18 16 46 H 0.39 9.78 6.10 -40.82 -0.25 9.53 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 389.28 15.07 5.87 5.87 Total: -1.00 -37.87 389.28 -8.87 -46.75 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -6.38 Total: 10.78 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -2.79 Total: 5.20 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: 0.19 Total: -59.22 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.73 Total: -25.91 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.87 -8.87 -46.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054883397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.992 kcal (2) G-P(sol) polarization free energy of solvation -37.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds