Wall clock time and date at job start Wed Apr 1 2020 05:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.91124 * 2 1 4 4 C 1.54906 * 111.00208 * 236.09775 * 2 1 3 5 5 N 1.47429 * 104.83275 * 204.91537 * 4 2 1 6 6 C 1.34773 * 125.64951 * 204.16418 * 5 4 2 7 7 O 1.21589 * 119.99828 * 355.14398 * 6 5 4 8 8 C 1.47529 * 119.99701 * 175.14220 * 6 5 4 9 9 C 1.39708 * 120.19237 * 46.97568 * 8 6 5 10 10 C 1.37795 * 119.90339 * 179.71816 * 9 8 6 11 11 C 1.38536 * 120.30224 * 0.58104 * 10 9 8 12 12 C 1.38063 * 120.39332 * 359.69229 * 11 10 9 13 13 C 1.38705 * 120.08157 * 0.02562 * 12 11 10 14 14 O 1.35648 * 120.14815 * 180.02562 * 13 12 11 15 15 C 1.42901 * 117.00213 * 359.97438 * 14 13 12 16 16 C 1.50699 * 109.47257 * 180.02562 * 15 14 13 17 17 N 1.34774 * 120.00123 * 179.97438 * 16 15 14 18 18 O 1.21285 * 119.99758 * 359.97438 * 16 15 14 19 19 C 1.47022 * 108.69735 * 24.12790 * 5 4 2 20 20 C 1.54317 * 107.27700 * 358.94410 * 19 5 4 21 21 H 1.09004 * 110.71777 * 219.26722 * 20 19 5 22 22 N 1.46497 * 110.72348 * 96.17080 * 20 19 5 23 23 C 1.36932 * 120.00297 * 86.45274 * 22 20 19 24 24 H 1.07998 * 119.99767 * 0.02562 * 23 22 20 25 25 C 1.38805 * 120.00268 * 179.97438 * 23 22 20 26 26 N 1.31623 * 120.00083 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00018 * 180.27614 * 25 23 22 28 28 H 1.48500 * 109.47270 * 269.72453 * 27 25 23 29 29 H 1.48497 * 109.47336 * 29.72715 * 27 25 23 30 30 H 1.48507 * 109.46957 * 149.72754 * 27 25 23 31 31 H 1.08998 * 109.46965 * 296.09745 * 1 2 3 32 32 H 1.08995 * 109.47335 * 56.09783 * 1 2 3 33 33 H 1.09004 * 109.46922 * 176.10341 * 1 2 3 34 34 H 1.09004 * 110.36820 * 86.07442 * 4 2 1 35 35 H 1.09000 * 110.45992 * 323.79954 * 4 2 1 36 36 H 1.07996 * 120.04284 * 0.02562 * 9 8 6 37 37 H 1.08001 * 119.84212 * 180.27404 * 10 9 8 38 38 H 1.08003 * 119.80482 * 179.71629 * 11 10 9 39 39 H 1.07998 * 119.95941 * 180.02562 * 12 11 10 40 40 H 1.08999 * 109.47120 * 300.00176 * 15 14 13 41 41 H 1.09001 * 109.46856 * 60.00184 * 15 14 13 42 42 H 0.96997 * 120.00007 * 0.02562 * 17 16 15 43 43 H 0.97001 * 120.00373 * 179.97438 * 17 16 15 44 44 H 1.09007 * 109.88278 * 239.51912 * 19 5 4 45 45 H 1.09005 * 110.00871 * 118.43812 * 19 5 4 46 46 H 0.97001 * 119.99341 * 266.45373 * 22 20 19 47 47 H 0.96998 * 119.99945 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4272 -1.2431 -0.7734 6 6 4.4481 -1.5603 -1.5940 7 8 4.2761 -1.5832 -2.7975 8 6 5.7742 -1.8798 -1.0321 9 6 5.8869 -2.7631 0.0444 10 6 7.1290 -3.0618 0.5608 11 6 8.2669 -2.4808 0.0252 12 6 8.1694 -1.6019 -1.0351 13 6 6.9277 -1.2943 -1.5712 14 8 6.8304 -0.4313 -2.6133 15 6 8.0489 0.1258 -3.1103 16 6 7.7455 1.0543 -4.2578 17 7 8.7485 1.6983 -4.8869 18 8 6.5987 1.2221 -4.6151 19 6 3.4674 -1.2741 0.6960 20 6 2.0862 -0.8079 1.2022 21 1 2.1921 -0.1725 2.0815 22 7 1.2269 -1.9574 1.4963 23 6 1.2816 -2.5563 2.7265 24 1 1.9580 -2.1810 3.4801 25 6 0.4670 -3.6451 3.0053 26 7 -0.3577 -4.1022 2.0870 27 14 0.5362 -4.4572 4.6861 28 1 1.5497 -5.5425 4.6701 29 1 0.9086 -3.4471 5.7089 30 1 -0.7948 -5.0276 5.0153 31 1 -0.3633 0.4521 0.9229 32 1 -0.3634 0.5732 -0.8529 33 1 -0.3633 -1.0253 -0.0698 34 1 2.1559 -0.1720 -2.0837 35 1 1.4524 -1.6704 -1.4042 36 1 5.0021 -3.2149 0.4680 37 1 7.2153 -3.7482 1.3902 38 1 9.2360 -2.7172 0.4391 39 1 9.0611 -1.1534 -1.4475 40 1 8.5452 0.6818 -2.3149 41 1 8.7014 -0.6766 -3.4545 42 1 9.6657 1.5638 -4.6013 43 1 8.5533 2.2957 -5.6258 44 1 4.2427 -0.5997 1.0599 45 1 3.6663 -2.2883 1.0423 46 1 0.6191 -2.2942 0.8194 47 1 -0.9267 -4.8633 2.2817 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054883397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:57 Heat of formation + Delta-G solvation = -83.611168 kcal Electronic energy + Delta-G solvation = -30942.158630 eV Core-core repulsion = 26703.853103 eV Total energy + Delta-G solvation = -4238.305527 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.83450 -40.94515 -40.08792 -38.84351 -38.19673 -35.68862 -34.82053 -34.05583 -32.51024 -31.97740 -31.26133 -29.37251 -29.21772 -27.52279 -25.83140 -24.82790 -23.52627 -23.17251 -21.76103 -20.87141 -20.72873 -19.47010 -19.15493 -18.63281 -18.11903 -17.45323 -17.39483 -17.37509 -16.84017 -16.63272 -16.20394 -15.85079 -15.70973 -15.46957 -15.33457 -15.10877 -14.85745 -14.62483 -14.40039 -14.15855 -13.78036 -13.50563 -13.48024 -13.35556 -13.06686 -12.87344 -12.78771 -12.68127 -12.36531 -12.22896 -12.13432 -12.10078 -11.92128 -11.46907 -11.38707 -11.17721 -11.03974 -10.85929 -10.77146 -10.05426 -9.64656 -9.27305 -9.00243 -7.89599 -5.18607 -0.01930 0.38232 1.47223 1.51536 1.52252 1.60731 1.67025 1.69857 2.02819 2.59613 2.74844 2.78850 3.39075 3.41368 3.68825 3.79998 3.82146 3.88843 3.93043 4.02627 4.06095 4.09369 4.10055 4.28094 4.34867 4.42020 4.49857 4.58904 4.60810 4.68971 4.81277 4.87793 4.93972 5.00603 5.14175 5.18517 5.27986 5.33021 5.33648 5.49467 5.53256 5.59805 5.70816 5.82100 6.23434 6.30844 6.43269 6.53990 7.11193 7.26876 7.38412 8.11515 8.35971 9.33808 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014051 B = 0.002967 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.269807 B = 9436.351490 C =10932.501702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.098 4.098 3 H 0.106 0.894 4 C 0.115 3.885 5 N -0.606 5.606 6 C 0.567 3.433 7 O -0.581 6.581 8 C -0.186 4.186 9 C -0.060 4.060 10 C -0.159 4.159 11 C -0.044 4.044 12 C -0.206 4.206 13 C 0.157 3.843 14 O -0.316 6.316 15 C 0.028 3.972 16 C 0.511 3.489 17 N -0.823 5.823 18 O -0.586 6.586 19 C 0.084 3.916 20 C 0.165 3.835 21 H 0.085 0.915 22 N -0.722 5.722 23 C -0.233 4.233 24 H 0.085 0.915 25 C -0.075 4.075 26 N -0.971 5.971 27 Si 0.970 3.030 28 H -0.290 1.290 29 H -0.265 1.265 30 H -0.303 1.303 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.122 0.878 37 H 0.153 0.847 38 H 0.175 0.825 39 H 0.178 0.822 40 H 0.135 0.865 41 H 0.131 0.869 42 H 0.424 0.576 43 H 0.413 0.587 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.375 0.625 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.989 11.081 -5.543 29.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.118 4.118 3 H 0.124 0.876 4 C -0.007 4.007 5 N -0.338 5.338 6 C 0.357 3.643 7 O -0.462 6.462 8 C -0.190 4.190 9 C -0.079 4.079 10 C -0.177 4.177 11 C -0.062 4.062 12 C -0.224 4.224 13 C 0.110 3.890 14 O -0.228 6.228 15 C -0.049 4.049 16 C 0.295 3.705 17 N -0.390 5.390 18 O -0.465 6.465 19 C -0.041 4.041 20 C 0.055 3.945 21 H 0.102 0.898 22 N -0.362 5.362 23 C -0.365 4.365 24 H 0.102 0.898 25 C -0.267 4.267 26 N -0.621 5.621 27 Si 0.799 3.201 28 H -0.217 1.217 29 H -0.190 1.190 30 H -0.230 1.230 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.140 0.860 37 H 0.170 0.830 38 H 0.192 0.808 39 H 0.195 0.805 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.257 0.743 43 H 0.246 0.754 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.208 0.792 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 26.042 11.089 -6.217 28.979 hybrid contribution -0.586 -0.869 0.067 1.050 sum 25.456 10.221 -6.150 28.112 Atomic orbital electron populations 1.21462 0.93121 1.01431 1.02083 1.22571 0.96987 0.99098 0.93144 0.87614 1.22222 0.82760 0.97625 0.98143 1.48434 1.11714 1.65592 1.08090 1.18348 0.84486 0.76245 0.85207 1.90747 1.84503 1.54645 1.16300 1.19176 0.90912 1.06569 1.02299 1.21351 0.99972 0.94410 0.92137 1.21363 0.91252 1.02693 1.02374 1.21601 0.99962 0.91919 0.92736 1.21602 0.95223 1.04363 1.01196 1.19111 0.93710 0.89414 0.86776 1.86232 1.33535 1.57080 1.45982 1.22913 0.86555 0.98576 0.96860 1.20567 0.85231 0.80876 0.83838 1.43421 1.09982 1.48099 1.37486 1.90856 1.23649 1.65001 1.66953 1.23190 1.01096 1.01740 0.78114 1.21449 0.88187 0.88837 0.96032 0.89758 1.42622 1.45934 1.33904 1.13759 1.19644 1.17031 1.08452 0.91350 0.89757 1.25518 0.99625 1.00369 1.01174 1.69835 1.28884 1.28199 1.35221 0.85192 0.76007 0.78546 0.80318 1.21721 1.18984 1.23022 0.91922 0.91266 0.94217 0.91527 0.93573 0.86015 0.82979 0.80768 0.80509 0.84718 0.85189 0.74297 0.75449 0.90446 0.91779 0.79177 0.94312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.11 8.85 71.98 0.64 -3.47 16 2 C -0.10 -3.30 3.51 -9.40 -0.03 -3.33 16 3 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 4 C 0.12 4.46 6.33 86.85 0.55 5.01 16 5 N -0.61 -23.98 3.33 -815.54 -2.71 -26.70 16 6 C 0.57 23.99 7.14 86.69 0.62 24.61 16 7 O -0.58 -29.32 16.75 6.50 0.11 -29.21 16 8 C -0.19 -6.25 5.43 -20.01 -0.11 -6.36 16 9 C -0.06 -1.72 8.52 22.52 0.19 -1.53 16 10 C -0.16 -3.13 10.02 22.24 0.22 -2.91 16 11 C -0.04 -0.61 10.03 22.30 0.22 -0.39 16 12 C -0.21 -3.21 9.03 22.34 0.20 -3.01 16 13 C 0.16 4.27 6.67 22.84 0.15 4.42 16 14 O -0.32 -9.51 8.66 -64.31 -0.56 -10.06 16 15 C 0.03 0.43 5.22 71.24 0.37 0.80 16 16 C 0.51 10.33 8.18 87.66 0.72 11.05 16 17 N -0.82 -6.30 8.87 -173.53 -1.54 -7.84 16 18 O -0.59 -20.91 17.34 15.99 0.28 -20.63 16 19 C 0.08 3.01 5.37 86.73 0.47 3.47 16 20 C 0.17 6.22 3.37 46.18 0.16 6.38 16 21 H 0.08 2.96 8.12 -2.39 -0.02 2.94 16 22 N -0.72 -34.52 4.61 -317.35 -1.46 -35.98 16 23 C -0.23 -12.14 9.98 84.03 0.84 -11.31 16 24 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 25 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 26 N -0.97 -58.80 13.06 21.65 0.28 -58.51 16 27 Si 0.97 44.85 29.55 68.60 2.03 46.87 16 28 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 29 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 30 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.04 1.57 6.38 -2.39 -0.02 1.55 16 34 H 0.07 2.58 8.09 -2.38 -0.02 2.56 16 35 H 0.05 1.98 7.99 -2.39 -0.02 1.96 16 36 H 0.12 3.91 5.89 -2.91 -0.02 3.89 16 37 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 39 H 0.18 1.01 6.30 -2.91 -0.02 0.99 16 40 H 0.14 0.86 7.66 -2.39 -0.02 0.85 16 41 H 0.13 0.98 7.66 -2.39 -0.02 0.96 16 42 H 0.42 -0.71 8.83 -92.71 -0.82 -1.53 16 43 H 0.41 2.91 8.93 -92.71 -0.83 2.08 16 44 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 45 H 0.06 2.51 5.87 -2.38 -0.01 2.50 16 46 H 0.37 19.84 6.10 -92.71 -0.57 19.28 16 47 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -91.62 389.28 0.93 -90.70 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: -1.17 Total: 31.61 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: 5.67 Total: 19.76 kcal Atomic # 7 Polarization: -123.60 SS G_CDS: -5.43 Total: -129.03 kcal Atomic # 8 Polarization: -59.74 SS G_CDS: -0.17 Total: -59.91 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -91.62 0.93 -90.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054883397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.085 kcal (2) G-P(sol) polarization free energy of solvation -91.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds