Wall clock time and date at job start Wed Apr 1 2020 05:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.88927 * 2 1 4 4 C 1.54910 * 111.00334 * 236.11768 * 2 1 3 5 5 N 1.47426 * 104.82869 * 204.88042 * 4 2 1 6 6 C 1.34783 * 125.64576 * 204.09580 * 5 4 2 7 7 O 1.21618 * 119.99960 * 359.97438 * 6 5 4 8 8 C 1.47287 * 119.99877 * 179.97438 * 6 5 4 9 9 C 1.36583 * 127.53160 * 0.02562 * 8 6 5 10 10 O 1.34103 * 108.89249 * 179.97438 * 9 8 6 11 11 C 1.33377 * 111.29361 * 359.61476 * 10 9 8 12 12 C 1.36180 * 108.07108 * 0.70303 * 11 10 9 13 13 C 1.47697 * 122.28535 * 179.17405 * 12 11 10 14 14 O 1.21611 * 122.34914 * 223.79337 * 13 12 11 15 15 N 1.35731 * 115.29811 * 43.76735 * 13 12 11 16 16 C 1.45345 * 119.12814 * 14.46715 * 15 13 12 17 17 C 1.53379 * 113.52476 * 273.66973 * 16 15 13 18 18 C 1.50528 * 128.61549 * 181.38595 * 11 10 9 19 19 C 1.47019 * 108.70528 * 24.35420 * 5 4 2 20 20 C 1.54332 * 107.26369 * 358.58892 * 19 5 4 21 21 H 1.09008 * 111.00084 * 219.59499 * 20 19 5 22 22 N 1.46506 * 110.51692 * 96.45064 * 20 19 5 23 23 C 1.36935 * 119.99805 * 91.49893 * 22 20 19 24 24 H 1.07997 * 120.00500 * 359.97438 * 23 22 20 25 25 C 1.38822 * 119.99472 * 180.02562 * 23 22 20 26 26 N 1.31617 * 120.00252 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99616 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47271 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47026 * 119.99976 * 27 25 23 30 30 H 1.48501 * 109.46624 * 239.99758 * 27 25 23 31 31 H 1.09002 * 109.47317 * 182.42446 * 1 2 3 32 32 H 1.08997 * 109.47024 * 302.42678 * 1 2 3 33 33 H 1.09003 * 109.46996 * 62.42932 * 1 2 3 34 34 H 1.08998 * 110.36340 * 86.04444 * 4 2 1 35 35 H 1.08993 * 110.46138 * 323.76571 * 4 2 1 36 36 H 1.07994 * 125.55537 * 359.90652 * 9 8 6 37 37 H 0.97001 * 120.43148 * 194.18190 * 15 13 12 38 38 H 1.09002 * 108.61448 * 34.68555 * 16 15 13 39 39 H 1.08997 * 108.61107 * 152.44012 * 16 15 13 40 40 H 1.08998 * 109.49959 * 284.32694 * 17 16 15 41 41 H 1.09008 * 109.37968 * 164.37412 * 17 16 15 42 42 H 1.09003 * 109.45422 * 228.79933 * 18 11 10 43 43 H 1.09003 * 109.44562 * 348.74710 * 18 11 10 44 44 H 1.09009 * 109.88031 * 118.13087 * 19 5 4 45 45 H 1.08991 * 109.88692 * 239.29248 * 19 5 4 46 46 H 0.96993 * 119.99606 * 271.49414 * 22 20 19 47 47 H 0.96994 * 120.00089 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8062 -1.2006 5 7 3.4275 -1.2420 -0.7740 6 6 4.4480 -1.5599 -1.5951 7 8 4.3001 -1.4988 -2.8008 8 6 5.7422 -1.9813 -1.0323 9 6 6.0757 -2.1038 0.2865 10 8 7.3495 -2.5136 0.3760 11 6 7.8901 -2.6818 -0.8316 12 6 6.9511 -2.3590 -1.7636 13 6 7.2261 -2.4170 -3.2136 14 8 6.8736 -1.5397 -3.9784 15 7 7.9005 -3.5180 -3.6324 16 6 8.0123 -4.6607 -2.7412 17 6 9.2010 -4.5703 -1.7760 18 6 9.2751 -3.1552 -1.1832 19 6 3.4666 -1.2785 0.6952 20 6 2.0869 -0.8078 1.2019 21 1 2.1899 -0.1706 2.0803 22 7 1.2283 -1.9578 1.4961 23 6 1.2079 -2.4924 2.7566 24 1 1.8251 -2.0666 3.5338 25 6 0.3947 -3.5824 3.0351 26 7 -0.3572 -4.1017 2.0878 27 14 0.3664 -4.3113 4.7548 28 1 1.2941 -3.5508 5.6301 29 1 -1.0110 -4.2306 5.3040 30 1 0.7938 -5.7323 4.6972 31 1 -0.3634 -1.0267 0.0435 32 1 -0.3633 0.5510 0.8674 33 1 -0.3633 0.4757 -0.9110 34 1 2.1554 -0.1714 -2.0838 35 1 1.4529 -1.6702 -1.4045 36 1 5.4208 -1.9023 1.1212 37 1 8.2989 -3.5434 -4.5164 38 1 7.0945 -4.7386 -2.1584 39 1 8.1158 -5.5630 -3.3438 40 1 10.1237 -4.7877 -2.3139 41 1 9.0699 -5.2946 -0.9720 42 1 9.7155 -2.4778 -1.9148 43 1 9.8924 -3.1704 -0.2849 44 1 3.6616 -2.2955 1.0357 45 1 4.2430 -0.6073 1.0621 46 1 0.6742 -2.3404 0.7979 47 1 -0.9251 -4.8635 2.2823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054922212.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:14 Heat of formation + Delta-G solvation = -25.764345 kcal Electronic energy + Delta-G solvation = -31522.841820 eV Core-core repulsion = 27287.044720 eV Total energy + Delta-G solvation = -4235.797100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.98506 -39.67339 -39.51596 -37.46167 -36.67977 -34.02528 -33.14204 -33.01964 -32.18629 -30.62840 -29.97069 -27.88587 -26.83041 -25.93390 -24.35696 -24.00674 -23.22441 -21.87156 -21.33545 -19.95263 -19.29868 -18.84835 -17.62209 -17.42263 -16.85127 -16.66259 -16.47607 -15.79918 -15.59234 -15.39016 -14.90650 -14.63213 -14.49988 -14.22513 -14.14341 -13.71051 -13.61988 -13.28123 -13.15594 -13.00304 -12.74502 -12.55701 -12.15883 -12.09293 -11.95494 -11.70155 -11.56403 -11.35757 -11.14778 -10.98692 -10.79155 -10.47990 -10.27313 -10.12304 -9.99214 -9.83993 -9.74726 -9.64556 -9.25604 -9.07637 -8.73254 -8.26092 -7.13321 -5.89611 -3.20260 1.23453 1.39603 2.46016 2.75979 3.17560 3.28183 3.35103 3.40835 3.43599 3.59958 4.21776 4.32063 4.44690 4.47237 4.47397 4.62968 4.77791 4.92698 5.01204 5.11232 5.11488 5.27435 5.28746 5.31551 5.34378 5.45127 5.50854 5.57600 5.58662 5.72374 5.78547 5.85679 5.91478 5.99989 6.13253 6.18378 6.30525 6.33513 6.48476 6.62778 6.68138 6.73181 6.80974 6.94541 6.97503 7.58171 7.84916 8.17491 8.27721 8.49833 9.39995 9.94238 10.29027 11.32301 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012292 B = 0.003252 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.435411 B = 8608.140493 C = 9964.420206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.079 0.921 4 C 0.118 3.882 5 N -0.603 5.603 6 C 0.590 3.410 7 O -0.526 6.526 8 C -0.174 4.174 9 C 0.008 3.992 10 O -0.158 6.158 11 C 0.027 3.973 12 C -0.193 4.193 13 C 0.595 3.405 14 O -0.494 6.494 15 N -0.733 5.733 16 C 0.105 3.895 17 C -0.134 4.134 18 C -0.040 4.040 19 C 0.057 3.943 20 C 0.173 3.827 21 H 0.076 0.924 22 N -0.711 5.711 23 C -0.250 4.250 24 H 0.073 0.927 25 C -0.007 4.007 26 N -0.927 5.927 27 Si 0.906 3.094 28 H -0.279 1.279 29 H -0.291 1.291 30 H -0.292 1.292 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.231 0.769 37 H 0.403 0.597 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.058 0.942 46 H 0.387 0.613 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.892 1.507 -5.114 19.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.097 0.903 4 C -0.004 4.004 5 N -0.337 5.337 6 C 0.379 3.621 7 O -0.403 6.403 8 C -0.179 4.179 9 C -0.060 4.060 10 O -0.052 6.052 11 C -0.025 4.025 12 C -0.198 4.198 13 C 0.381 3.619 14 O -0.367 6.367 15 N -0.388 5.388 16 C -0.020 4.020 17 C -0.173 4.173 18 C -0.077 4.077 19 C -0.069 4.069 20 C 0.061 3.939 21 H 0.094 0.906 22 N -0.352 5.352 23 C -0.381 4.381 24 H 0.091 0.909 25 C -0.203 4.203 26 N -0.574 5.574 27 Si 0.737 3.263 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.219 1.219 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.247 0.753 37 H 0.239 0.761 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.110 0.890 44 H 0.099 0.901 45 H 0.076 0.924 46 H 0.223 0.777 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 18.715 1.890 -5.601 19.627 hybrid contribution -0.184 -0.725 0.491 0.895 sum 18.531 1.165 -5.110 19.258 Atomic orbital electron populations 1.21561 0.93254 1.03552 1.00598 1.22653 0.97081 0.98507 0.95283 0.90282 1.22260 0.82251 0.98448 0.97464 1.48220 1.11984 1.66104 1.07355 1.16751 0.81749 0.77956 0.85637 1.90848 1.82536 1.53287 1.13617 1.20826 0.95182 1.09381 0.92476 1.25685 0.82213 0.99253 0.98869 1.83591 1.25132 1.65353 1.31109 1.22608 0.96950 1.01475 0.81423 1.20895 0.94233 1.09942 0.94759 1.17625 0.76625 0.81392 0.86218 1.90872 1.48881 1.39552 1.57371 1.45677 1.58253 1.15945 1.18956 1.21271 0.99044 0.88451 0.93273 1.22334 0.99907 0.95668 0.99418 1.20267 0.87754 0.97490 1.02197 1.23609 1.02180 1.01726 0.79349 1.21196 0.87915 0.89916 0.94891 0.90640 1.42480 1.48866 1.32904 1.10902 1.19278 1.21007 1.10029 0.87745 0.90860 1.24759 0.99209 0.98744 0.97634 1.69664 1.29969 1.26025 1.31762 0.86144 0.77349 0.78866 0.83924 1.20459 1.21800 1.21867 0.90807 0.92304 0.93644 0.91057 0.91124 0.75296 0.76066 0.90637 0.89732 0.89873 0.89631 0.88609 0.89001 0.90085 0.92400 0.77676 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.98 37.16 0.33 -1.73 16 2 C -0.12 -1.79 3.51 -88.47 -0.31 -2.10 16 3 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.12 2.02 6.33 -2.53 -0.02 2.00 16 5 N -0.60 -10.61 3.33 -171.84 -0.57 -11.18 16 6 C 0.59 11.42 7.84 -12.58 -0.10 11.33 16 7 O -0.53 -12.04 16.02 -3.85 -0.06 -12.10 16 8 C -0.17 -2.87 6.28 -103.60 -0.65 -3.52 16 9 C 0.01 0.11 10.65 30.13 0.32 0.43 16 10 O -0.16 -1.92 10.48 8.64 0.09 -1.83 16 11 C 0.03 0.32 6.37 -35.13 -0.22 0.09 16 12 C -0.19 -2.91 4.97 -103.56 -0.52 -3.42 16 13 C 0.60 9.29 7.29 -11.96 -0.09 9.20 16 14 O -0.49 -9.94 17.12 -3.85 -0.07 -10.01 16 15 N -0.73 -7.61 5.26 -61.62 -0.32 -7.94 16 16 C 0.11 0.81 6.03 -4.47 -0.03 0.79 16 17 C -0.13 -0.73 6.33 -26.22 -0.17 -0.89 16 18 C -0.04 -0.29 5.65 -27.65 -0.16 -0.44 16 19 C 0.06 0.91 4.75 -3.06 -0.01 0.90 16 20 C 0.17 3.03 3.40 -66.09 -0.22 2.80 16 21 H 0.08 1.27 8.09 -51.92 -0.42 0.85 16 22 N -0.71 -15.84 4.45 -51.64 -0.23 -16.07 16 23 C -0.25 -6.24 9.96 -15.06 -0.15 -6.39 16 24 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 25 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 26 N -0.93 -26.42 13.06 55.49 0.72 -25.69 16 27 Si 0.91 21.01 29.55 -169.99 -5.02 15.99 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 31 H 0.07 1.36 6.28 -51.93 -0.33 1.03 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 1.20 8.04 -51.93 -0.42 0.79 16 35 H 0.07 1.31 8.04 -51.93 -0.42 0.89 16 36 H 0.23 2.65 4.49 -52.49 -0.24 2.41 16 37 H 0.40 3.33 8.95 -40.82 -0.37 2.97 16 38 H 0.08 0.77 6.93 -51.93 -0.36 0.41 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.09 0.40 8.14 -51.92 -0.42 -0.02 16 42 H 0.10 0.66 8.05 -51.93 -0.42 0.25 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 1.39 6.98 -51.92 -0.36 1.03 16 45 H 0.06 0.76 6.87 -51.93 -0.36 0.40 16 46 H 0.39 9.43 6.25 -40.82 -0.26 9.18 16 47 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 376.53 15.07 5.67 5.67 Total: -1.00 -35.23 376.53 -8.31 -43.54 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -6.44 Total: 10.85 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -2.08 Total: 8.78 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.40 Total: -60.88 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.04 Total: -23.94 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.23 -8.31 -43.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054922212.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.774 kcal (2) G-P(sol) polarization free energy of solvation -35.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds