Wall clock time and date at job start Wed Apr 1 2020 05:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.88927 * 2 1 4 4 C 1.54910 * 111.00334 * 236.11768 * 2 1 3 5 5 N 1.47426 * 104.82869 * 204.88042 * 4 2 1 6 6 C 1.34783 * 125.64576 * 204.09580 * 5 4 2 7 7 O 1.21618 * 119.99960 * 359.97438 * 6 5 4 8 8 C 1.47287 * 119.99877 * 179.97438 * 6 5 4 9 9 C 1.36583 * 127.53160 * 0.02562 * 8 6 5 10 10 O 1.34103 * 108.89249 * 179.97438 * 9 8 6 11 11 C 1.33377 * 111.29361 * 359.61476 * 10 9 8 12 12 C 1.36180 * 108.07108 * 0.70303 * 11 10 9 13 13 C 1.47697 * 122.28535 * 179.17405 * 12 11 10 14 14 O 1.21611 * 122.34914 * 223.79337 * 13 12 11 15 15 N 1.35731 * 115.29811 * 43.76735 * 13 12 11 16 16 C 1.45345 * 119.12814 * 14.46715 * 15 13 12 17 17 C 1.53379 * 113.52476 * 273.66973 * 16 15 13 18 18 C 1.50528 * 128.61549 * 181.38595 * 11 10 9 19 19 C 1.47019 * 108.70528 * 24.35420 * 5 4 2 20 20 C 1.54332 * 107.26369 * 358.58892 * 19 5 4 21 21 H 1.09008 * 111.00084 * 219.59499 * 20 19 5 22 22 N 1.46506 * 110.51692 * 96.45064 * 20 19 5 23 23 C 1.36935 * 119.99805 * 91.49893 * 22 20 19 24 24 H 1.07997 * 120.00500 * 359.97438 * 23 22 20 25 25 C 1.38822 * 119.99472 * 180.02562 * 23 22 20 26 26 N 1.31617 * 120.00252 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99616 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47271 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47026 * 119.99976 * 27 25 23 30 30 H 1.48501 * 109.46624 * 239.99758 * 27 25 23 31 31 H 1.09002 * 109.47317 * 182.42446 * 1 2 3 32 32 H 1.08997 * 109.47024 * 302.42678 * 1 2 3 33 33 H 1.09003 * 109.46996 * 62.42932 * 1 2 3 34 34 H 1.08998 * 110.36340 * 86.04444 * 4 2 1 35 35 H 1.08993 * 110.46138 * 323.76571 * 4 2 1 36 36 H 1.07994 * 125.55537 * 359.90652 * 9 8 6 37 37 H 0.97001 * 120.43148 * 194.18190 * 15 13 12 38 38 H 1.09002 * 108.61448 * 34.68555 * 16 15 13 39 39 H 1.08997 * 108.61107 * 152.44012 * 16 15 13 40 40 H 1.08998 * 109.49959 * 284.32694 * 17 16 15 41 41 H 1.09008 * 109.37968 * 164.37412 * 17 16 15 42 42 H 1.09003 * 109.45422 * 228.79933 * 18 11 10 43 43 H 1.09003 * 109.44562 * 348.74710 * 18 11 10 44 44 H 1.09009 * 109.88031 * 118.13087 * 19 5 4 45 45 H 1.08991 * 109.88692 * 239.29248 * 19 5 4 46 46 H 0.96993 * 119.99606 * 271.49414 * 22 20 19 47 47 H 0.96994 * 120.00089 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8062 -1.2006 5 7 3.4275 -1.2420 -0.7740 6 6 4.4480 -1.5599 -1.5951 7 8 4.3001 -1.4988 -2.8008 8 6 5.7422 -1.9813 -1.0323 9 6 6.0757 -2.1038 0.2865 10 8 7.3495 -2.5136 0.3760 11 6 7.8901 -2.6818 -0.8316 12 6 6.9511 -2.3590 -1.7636 13 6 7.2261 -2.4170 -3.2136 14 8 6.8736 -1.5397 -3.9784 15 7 7.9005 -3.5180 -3.6324 16 6 8.0123 -4.6607 -2.7412 17 6 9.2010 -4.5703 -1.7760 18 6 9.2751 -3.1552 -1.1832 19 6 3.4666 -1.2785 0.6952 20 6 2.0869 -0.8078 1.2019 21 1 2.1899 -0.1706 2.0803 22 7 1.2283 -1.9578 1.4961 23 6 1.2079 -2.4924 2.7566 24 1 1.8251 -2.0666 3.5338 25 6 0.3947 -3.5824 3.0351 26 7 -0.3572 -4.1017 2.0878 27 14 0.3664 -4.3113 4.7548 28 1 1.2941 -3.5508 5.6301 29 1 -1.0110 -4.2306 5.3040 30 1 0.7938 -5.7323 4.6972 31 1 -0.3634 -1.0267 0.0435 32 1 -0.3633 0.5510 0.8674 33 1 -0.3633 0.4757 -0.9110 34 1 2.1554 -0.1714 -2.0838 35 1 1.4529 -1.6702 -1.4045 36 1 5.4208 -1.9023 1.1212 37 1 8.2989 -3.5434 -4.5164 38 1 7.0945 -4.7386 -2.1584 39 1 8.1158 -5.5630 -3.3438 40 1 10.1237 -4.7877 -2.3139 41 1 9.0699 -5.2946 -0.9720 42 1 9.7155 -2.4778 -1.9148 43 1 9.8924 -3.1704 -0.2849 44 1 3.6616 -2.2955 1.0357 45 1 4.2430 -0.6073 1.0621 46 1 0.6742 -2.3404 0.7979 47 1 -0.9251 -4.8635 2.2823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054922212.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:12 Heat of formation + Delta-G solvation = -51.548669 kcal Electronic energy + Delta-G solvation = -31523.959912 eV Core-core repulsion = 27287.044720 eV Total energy + Delta-G solvation = -4236.915193 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.01278 -41.09964 -40.55694 -38.95610 -37.62265 -35.74076 -34.47270 -33.85151 -33.49473 -32.27105 -30.95887 -29.45022 -27.89569 -26.96757 -25.89761 -25.28414 -24.55455 -22.95531 -22.33645 -20.97156 -20.71949 -20.05127 -19.36091 -18.49281 -17.91452 -17.82488 -17.48864 -17.21494 -16.80215 -16.46291 -16.35926 -15.95812 -15.72767 -15.36422 -15.34841 -15.17368 -14.76159 -14.60650 -14.25789 -14.16410 -14.05473 -13.76546 -13.50044 -13.34233 -13.03837 -12.86635 -12.80810 -12.70738 -12.47742 -12.32891 -12.05722 -11.95571 -11.83084 -11.45711 -11.43735 -11.29528 -11.18499 -11.00836 -10.93860 -10.14438 -9.76443 -9.69909 -9.00323 -7.89430 -5.18210 0.16849 0.27212 1.47858 1.52327 1.53733 1.62467 1.62997 1.89100 2.16661 2.38945 2.60269 3.24968 3.38950 3.41887 3.49514 3.66473 3.82713 3.85791 3.89770 3.92352 4.06398 4.10537 4.14296 4.30000 4.37688 4.44017 4.53965 4.60066 4.63503 4.67459 4.77178 4.79568 4.83186 4.92642 4.97471 4.99455 5.08679 5.17026 5.18037 5.24722 5.31534 5.57236 5.62435 5.71765 5.95907 6.03896 6.31026 6.43323 7.04308 7.15647 7.39091 8.12102 8.35237 9.34104 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012292 B = 0.003252 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.435411 B = 8608.140493 C = 9964.420206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.100 4.100 3 H 0.109 0.891 4 C 0.116 3.884 5 N -0.603 5.603 6 C 0.583 3.417 7 O -0.575 6.575 8 C -0.214 4.214 9 C 0.032 3.968 10 O -0.149 6.149 11 C 0.059 3.941 12 C -0.235 4.235 13 C 0.587 3.413 14 O -0.558 6.558 15 N -0.715 5.715 16 C 0.096 3.904 17 C -0.123 4.123 18 C -0.044 4.044 19 C 0.064 3.936 20 C 0.166 3.834 21 H 0.095 0.905 22 N -0.722 5.722 23 C -0.233 4.233 24 H 0.090 0.910 25 C -0.073 4.073 26 N -0.971 5.971 27 Si 0.966 3.034 28 H -0.258 1.258 29 H -0.302 1.302 30 H -0.302 1.302 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.249 0.751 37 H 0.414 0.586 38 H 0.047 0.953 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.122 0.878 44 H 0.070 0.930 45 H 0.098 0.902 46 H 0.374 0.626 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.262 1.626 -2.993 22.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.120 4.120 3 H 0.127 0.873 4 C -0.007 4.007 5 N -0.335 5.335 6 C 0.374 3.626 7 O -0.457 6.457 8 C -0.218 4.218 9 C -0.037 4.037 10 O -0.042 6.042 11 C 0.006 3.994 12 C -0.240 4.240 13 C 0.374 3.626 14 O -0.436 6.436 15 N -0.369 5.369 16 C -0.028 4.028 17 C -0.162 4.162 18 C -0.081 4.081 19 C -0.061 4.061 20 C 0.056 3.944 21 H 0.113 0.887 22 N -0.362 5.362 23 C -0.364 4.364 24 H 0.107 0.893 25 C -0.265 4.265 26 N -0.621 5.621 27 Si 0.797 3.203 28 H -0.182 1.182 29 H -0.229 1.229 30 H -0.229 1.229 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.265 0.735 37 H 0.251 0.749 38 H 0.066 0.934 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.140 0.860 44 H 0.088 0.912 45 H 0.116 0.884 46 H 0.207 0.793 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 22.159 2.008 -3.428 22.512 hybrid contribution -1.149 -0.754 -0.205 1.389 sum 21.010 1.253 -3.633 21.359 Atomic orbital electron populations 1.21482 0.93370 1.01656 1.01862 1.22617 0.96841 0.99307 0.93186 0.87261 1.22255 0.82109 0.97836 0.98481 1.48309 1.11681 1.65425 1.08040 1.17251 0.82908 0.77239 0.85236 1.90809 1.83561 1.55594 1.15694 1.20786 0.94691 1.12101 0.94265 1.25814 0.82632 0.97417 0.97871 1.83645 1.24479 1.64864 1.31262 1.23398 0.97702 0.98113 0.80138 1.21036 0.95023 1.12698 0.95213 1.17927 0.76506 0.81720 0.86397 1.90822 1.51874 1.42107 1.58753 1.45615 1.56397 1.15021 1.19822 1.21570 0.99218 0.88241 0.93771 1.22354 0.99895 0.94659 0.99259 1.20645 0.85127 0.98502 1.03841 1.23546 1.02278 1.02065 0.78204 1.21475 0.87787 0.88788 0.96388 0.88678 1.42660 1.49567 1.34127 1.09806 1.19741 1.19082 1.08760 0.88844 0.89254 1.25486 1.00143 1.00172 1.00706 1.69831 1.31777 1.26846 1.33685 0.85174 0.76916 0.77662 0.80597 1.18229 1.22939 1.22942 0.94138 0.91831 0.91627 0.91139 0.93482 0.73548 0.74854 0.93435 0.86685 0.86548 0.88042 0.88082 0.86000 0.91163 0.88402 0.79288 0.94385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 8.98 71.98 0.65 -3.23 16 2 C -0.10 -2.97 3.51 -9.40 -0.03 -3.00 16 3 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 4 C 0.12 4.04 6.33 86.86 0.55 4.59 16 5 N -0.60 -21.35 3.33 -815.81 -2.71 -24.06 16 6 C 0.58 23.40 7.84 86.62 0.68 24.08 16 7 O -0.58 -28.10 16.02 4.63 0.07 -28.03 16 8 C -0.21 -7.10 6.28 -19.20 -0.12 -7.22 16 9 C 0.03 0.79 10.65 67.43 0.72 1.50 16 10 O -0.15 -3.22 10.48 8.01 0.08 -3.13 16 11 C 0.06 1.23 6.37 25.15 0.16 1.39 16 12 C -0.23 -7.07 4.97 -19.17 -0.10 -7.17 16 13 C 0.59 18.92 7.29 86.59 0.63 19.55 16 14 O -0.56 -23.90 17.12 4.65 0.08 -23.82 16 15 N -0.71 -14.34 5.26 -466.59 -2.45 -16.80 16 16 C 0.10 1.27 6.03 86.72 0.52 1.80 16 17 C -0.12 -0.80 6.33 30.92 0.20 -0.60 16 18 C -0.04 -0.46 5.65 30.00 0.17 -0.29 16 19 C 0.06 1.92 4.75 86.73 0.41 2.34 16 20 C 0.17 5.50 3.40 46.18 0.16 5.66 16 21 H 0.10 2.85 8.09 -2.38 -0.02 2.83 16 22 N -0.72 -32.02 4.45 -317.30 -1.41 -33.43 16 23 C -0.23 -11.40 9.96 84.04 0.84 -10.56 16 24 H 0.09 4.03 7.83 -2.91 -0.02 4.00 16 25 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 26 N -0.97 -56.95 13.06 21.65 0.28 -56.66 16 27 Si 0.97 43.22 29.55 68.60 2.03 45.25 16 28 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 29 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 30 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 31 H 0.04 1.53 6.28 -2.39 -0.01 1.51 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 2.46 8.04 -2.39 -0.02 2.44 16 35 H 0.05 1.85 8.04 -2.39 -0.02 1.83 16 36 H 0.25 5.02 4.49 -2.91 -0.01 5.00 16 37 H 0.41 6.50 8.95 -92.71 -0.83 5.67 16 38 H 0.05 0.92 6.93 -2.39 -0.02 0.91 16 39 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 41 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 42 H 0.10 1.05 8.05 -2.39 -0.02 1.03 16 43 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.07 2.31 6.98 -2.38 -0.02 2.30 16 45 H 0.10 2.22 6.87 -2.39 -0.02 2.20 16 46 H 0.37 18.73 6.25 -92.71 -0.58 18.15 16 47 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -83.21 376.53 1.50 -81.71 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: -0.37 Total: 33.55 kcal Atomic # 6 Polarization: 19.52 SS G_CDS: 5.90 Total: 25.42 kcal Atomic # 7 Polarization: -124.65 SS G_CDS: -6.29 Total: -130.95 kcal Atomic # 8 Polarization: -55.22 SS G_CDS: 0.24 Total: -54.98 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -83.21 1.50 -81.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054922212.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.162 kcal (2) G-P(sol) polarization free energy of solvation -83.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds