Wall clock time and date at job start Wed Apr 1 2020 05:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.30746 * 2 1 4 4 C 1.54390 * 110.34017 * 237.71328 * 2 1 3 5 5 N 1.48149 * 104.61804 * 264.99540 * 4 2 1 6 6 C 1.34779 * 127.83441 * 140.39405 * 5 4 2 7 7 O 1.21351 * 119.99730 * 179.97438 * 6 5 4 8 8 C 1.49450 * 119.99968 * 359.97438 * 6 5 4 9 9 N 1.34779 * 119.99968 * 179.97438 * 8 6 5 10 10 O 1.21351 * 120.00302 * 359.97438 * 8 6 5 11 11 C 1.48139 * 104.32556 * 320.41914 * 5 4 2 12 12 C 1.54289 * 110.34292 * 122.18005 * 2 1 3 13 13 H 1.08997 * 110.33958 * 237.84435 * 12 2 1 14 14 N 1.46906 * 110.33850 * 359.97438 * 12 2 1 15 15 C 1.46903 * 110.99516 * 196.43389 * 14 12 2 16 16 C 1.50705 * 109.46813 * 180.02562 * 15 14 12 17 17 C 1.38304 * 119.92902 * 90.00074 * 16 15 14 18 18 C 1.38097 * 120.06769 * 179.97438 * 17 16 15 19 19 C 1.38881 * 119.92929 * 0.02562 * 18 17 16 20 20 O 1.35749 * 120.06775 * 180.02562 * 19 18 17 21 21 C 1.34834 * 116.99824 * 5.53801 * 20 19 18 22 22 H 1.07994 * 120.00190 * 355.35797 * 21 20 19 23 23 C 1.38656 * 119.99869 * 175.36362 * 21 20 19 24 24 N 1.31564 * 120.00148 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00108 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47338 * 179.97438 * 25 23 21 27 27 H 1.48507 * 109.47216 * 299.99530 * 25 23 21 28 28 H 1.48500 * 109.47621 * 59.99560 * 25 23 21 29 29 C 1.38875 * 119.86213 * 0.27397 * 19 18 17 30 30 C 1.38103 * 119.92981 * 359.44980 * 29 19 18 31 31 H 1.09000 * 109.46699 * 303.91751 * 1 2 3 32 32 H 1.09001 * 109.47094 * 63.90940 * 1 2 3 33 33 H 1.08998 * 109.47449 * 183.91541 * 1 2 3 34 34 H 1.08997 * 110.40632 * 23.78358 * 4 2 1 35 35 H 1.09008 * 110.40673 * 146.21251 * 4 2 1 36 36 H 0.97004 * 119.99703 * 0.02562 * 9 8 6 37 37 H 0.96992 * 120.00019 * 180.02562 * 9 8 6 38 38 H 1.09009 * 110.40284 * 280.79859 * 11 5 4 39 39 H 1.09001 * 110.40984 * 158.37063 * 11 5 4 40 40 H 1.00896 * 110.99978 * 320.38792 * 14 12 2 41 41 H 1.08995 * 109.47127 * 59.99840 * 15 14 12 42 42 H 1.09002 * 109.46921 * 299.99670 * 15 14 12 43 43 H 1.08007 * 119.96302 * 359.97438 * 17 16 15 44 44 H 1.08001 * 120.03640 * 180.02562 * 18 17 16 45 45 H 0.97003 * 119.99685 * 0.02562 * 24 23 21 46 46 H 1.08003 * 120.03197 * 179.72699 * 29 19 18 47 47 H 1.07995 * 119.96214 * 180.27684 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0666 -0.7733 -1.2238 5 7 2.3139 -2.1446 -0.7206 6 6 2.0769 -3.3119 -1.3513 7 8 2.3362 -4.3621 -0.8015 8 6 1.4947 -3.3127 -2.7278 9 7 1.2582 -4.4800 -3.3587 10 8 1.2349 -2.2625 -3.2774 11 6 2.8800 -1.9417 0.6332 12 6 2.0664 -0.7705 1.2244 13 1 2.7081 -0.1266 1.8258 14 7 0.9523 -1.2799 2.0353 15 6 1.4108 -1.6655 3.3766 16 6 0.2434 -2.1826 4.1771 17 6 -0.0701 -3.5294 4.1490 18 6 -1.1390 -4.0064 4.8819 19 6 -1.8997 -3.1321 5.6472 20 8 -2.9506 -3.5981 6.3691 21 6 -3.1335 -4.9338 6.3918 22 1 -2.5054 -5.5751 5.7914 23 6 -4.1280 -5.4840 7.1860 24 7 -4.8929 -4.7028 7.9178 25 14 -4.3818 -7.3343 7.2170 26 1 -5.4983 -7.6655 8.1383 27 1 -4.7095 -7.8120 5.8496 28 1 -3.1390 -7.9967 7.6880 29 6 -1.5861 -1.7794 5.6684 30 6 -0.5125 -1.3094 4.9378 31 1 -0.3633 0.5734 0.8528 32 1 -0.3633 0.4520 -0.9229 33 1 -0.3634 -1.0252 0.0702 34 1 1.3222 -0.7889 -2.0198 35 1 2.9949 -0.3257 -1.5791 36 1 1.4655 -5.3195 -2.9192 37 1 0.8807 -4.4806 -4.2522 38 1 3.9354 -1.6766 0.5680 39 1 2.7493 -2.8389 1.2382 40 1 0.2053 -0.6038 2.0889 41 1 1.8394 -0.7975 3.8775 42 1 2.1669 -2.4461 3.2916 43 1 0.5217 -4.2087 3.5533 44 1 -1.3831 -5.0583 4.8599 45 1 -4.7613 -3.7419 7.9015 46 1 -2.1786 -1.0964 6.2591 47 1 -0.2655 -0.2583 4.9574 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001055020464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:07 Heat of formation + Delta-G solvation = -58.000211 kcal Electronic energy + Delta-G solvation = -30125.264053 eV Core-core repulsion = 25888.069101 eV Total energy + Delta-G solvation = -4237.194952 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.00898 -39.48186 -39.03852 -38.15324 -36.93751 -34.98585 -33.95415 -32.67031 -32.15583 -30.23518 -30.09399 -28.55390 -26.70038 -25.50793 -25.00504 -23.99650 -22.43670 -21.94144 -20.63936 -20.20799 -19.74297 -18.39691 -18.33691 -17.33489 -17.02533 -16.88342 -16.59573 -15.84201 -15.37191 -15.15036 -15.07317 -14.78085 -14.22514 -13.99658 -13.94690 -13.81526 -13.69238 -13.57674 -13.39652 -13.13403 -12.86666 -12.72394 -12.58117 -12.22963 -11.91658 -11.62742 -11.44067 -11.24425 -11.14954 -11.02632 -10.97645 -10.74215 -10.61522 -10.28694 -10.25829 -10.25216 -9.81396 -9.39992 -9.10290 -8.76976 -8.42322 -8.22643 -7.25942 -6.77119 -4.06025 1.15687 2.09581 2.15991 2.22667 2.95687 3.24673 3.29236 3.37339 3.45983 4.03111 4.12224 4.13587 4.25284 4.34354 4.61722 4.73948 4.94803 5.06835 5.14886 5.18010 5.21156 5.22538 5.34926 5.38927 5.46801 5.49203 5.53257 5.68134 5.71330 5.75590 5.80098 5.85003 5.88126 6.15711 6.16984 6.23020 6.37214 6.60239 6.62578 6.83442 6.95905 7.05982 7.10724 7.20295 7.34941 7.39830 7.43985 7.57553 7.72442 7.73268 8.40136 8.92014 9.60784 10.66906 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012518 B = 0.002362 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.239710 B =11853.751988 C =13214.071525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 H 0.087 0.913 4 C 0.092 3.908 5 N -0.583 5.583 6 C 0.526 3.474 7 O -0.520 6.520 8 C 0.519 3.481 9 N -0.822 5.822 10 O -0.520 6.520 11 C 0.112 3.888 12 C 0.072 3.928 13 H 0.061 0.939 14 N -0.676 5.676 15 C 0.115 3.885 16 C -0.183 4.183 17 C -0.047 4.047 18 C -0.231 4.231 19 C 0.159 3.841 20 O -0.203 6.203 21 C -0.471 4.471 22 H 0.084 0.916 23 C 0.010 3.990 24 N -0.882 5.882 25 Si 1.095 2.905 26 H -0.273 1.273 27 H -0.281 1.281 28 H -0.281 1.281 29 C -0.197 4.197 30 C -0.068 4.068 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.415 0.585 37 H 0.411 0.589 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.349 0.651 41 H 0.029 0.971 42 H 0.070 0.930 43 H 0.108 0.892 44 H 0.127 0.873 45 H 0.282 0.718 46 H 0.114 0.886 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.143 7.636 -20.031 26.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.105 0.895 4 C -0.030 4.030 5 N -0.316 5.316 6 C 0.308 3.692 7 O -0.396 6.396 8 C 0.299 3.701 9 N -0.388 5.388 10 O -0.396 6.396 11 C -0.010 4.010 12 C -0.039 4.039 13 H 0.078 0.922 14 N -0.311 5.311 15 C -0.013 4.013 16 C -0.184 4.184 17 C -0.066 4.066 18 C -0.250 4.250 19 C 0.105 3.895 20 O -0.107 6.107 21 C -0.547 4.547 22 H 0.101 0.899 23 C -0.195 4.195 24 N -0.514 5.514 25 Si 0.919 3.081 26 H -0.198 1.198 27 H -0.207 1.207 28 H -0.207 1.207 29 C -0.216 4.216 30 C -0.087 4.087 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.132 0.868 35 H 0.092 0.908 36 H 0.245 0.755 37 H 0.243 0.757 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.171 0.829 41 H 0.047 0.953 42 H 0.088 0.912 43 H 0.126 0.874 44 H 0.145 0.855 45 H 0.092 0.908 46 H 0.132 0.868 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 15.052 5.988 -19.390 25.266 hybrid contribution 1.114 1.639 -0.502 2.044 sum 16.166 7.627 -19.892 26.743 Atomic orbital electron populations 1.21754 0.93587 1.03465 1.01378 1.22283 0.97575 0.98867 0.93860 0.89487 1.22964 1.02238 0.80128 0.97674 1.48517 1.60252 1.05579 1.17277 1.19529 0.80018 0.83152 0.86474 1.90795 1.51652 1.30186 1.66985 1.20095 0.78688 0.84512 0.86846 1.43531 1.65573 1.08847 1.20849 1.90712 1.51138 1.30764 1.66994 1.22551 0.95907 1.00112 0.82476 1.22470 0.93143 0.94048 0.94217 0.92154 1.60773 1.09707 1.46655 1.13998 1.20688 0.95224 0.98479 0.86882 1.19095 1.01002 0.93955 1.04338 1.20601 0.95516 0.94416 0.96065 1.21184 0.99596 1.00730 1.03484 1.19247 0.86975 0.92620 0.90625 1.83660 1.40061 1.25779 1.61181 1.22215 1.22076 0.79121 1.31321 0.89857 1.26541 0.92081 1.08287 0.92621 1.70581 1.36989 1.07448 1.36335 0.83115 0.77093 0.70810 0.77061 1.19780 1.20697 1.20713 1.20137 1.01409 0.93354 1.06735 1.20452 0.94394 0.97794 0.96072 0.92440 0.92432 0.90793 0.86788 0.90846 0.75461 0.75681 0.90567 0.88704 0.82891 0.95255 0.91155 0.87406 0.85527 0.90836 0.86825 0.87466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 7.81 37.16 0.29 -0.98 16 2 C -0.11 -0.82 3.66 -89.22 -0.33 -1.14 16 3 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 4 C 0.09 0.78 6.15 -2.41 -0.01 0.77 16 5 N -0.58 -6.13 3.32 -169.81 -0.56 -6.70 16 6 C 0.53 6.28 7.98 -11.58 -0.09 6.18 16 7 O -0.52 -7.42 16.74 5.50 0.09 -7.33 16 8 C 0.52 5.33 8.14 -11.58 -0.09 5.23 16 9 N -0.82 -5.56 8.87 30.91 0.27 -5.28 16 10 O -0.52 -6.11 14.61 5.50 0.08 -6.03 16 11 C 0.11 1.09 6.62 -2.41 -0.02 1.07 16 12 C 0.07 0.64 3.35 -66.31 -0.22 0.42 16 13 H 0.06 0.46 7.95 -51.93 -0.41 0.05 16 14 N -0.68 -7.74 5.35 -106.50 -0.57 -8.31 16 15 C 0.12 1.46 5.60 -4.97 -0.03 1.43 16 16 C -0.18 -3.03 5.40 -104.58 -0.56 -3.60 16 17 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 18 C -0.23 -5.16 9.17 -39.40 -0.36 -5.52 16 19 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16 20 O -0.20 -5.77 9.16 0.04 0.00 -5.77 16 21 C -0.47 -13.43 9.49 30.89 0.29 -13.14 16 22 H 0.08 2.24 5.20 -52.49 -0.27 1.97 16 23 C 0.01 0.28 5.49 -17.51 -0.10 0.18 16 24 N -0.88 -26.53 13.70 55.48 0.76 -25.77 16 25 Si 1.10 23.96 29.92 -169.99 -5.09 18.87 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 28 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 29 C -0.20 -4.11 9.99 -39.40 -0.39 -4.50 16 30 C -0.07 -1.18 9.69 -39.61 -0.38 -1.56 16 31 H 0.06 0.48 7.05 -51.93 -0.37 0.11 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.85 7.54 -51.93 -0.39 0.45 16 34 H 0.11 1.11 5.20 -51.93 -0.27 0.84 16 35 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 36 H 0.41 2.42 8.30 -40.82 -0.34 2.08 16 37 H 0.41 1.85 8.93 -40.82 -0.36 1.49 16 38 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.09 1.13 6.98 -51.93 -0.36 0.77 16 40 H 0.35 3.97 6.13 -39.29 -0.24 3.73 16 41 H 0.03 0.33 8.03 -51.93 -0.42 -0.08 16 42 H 0.07 0.88 7.27 -51.93 -0.38 0.50 16 43 H 0.11 1.86 8.06 -52.48 -0.42 1.43 16 44 H 0.13 2.90 5.64 -52.49 -0.30 2.60 16 45 H 0.28 8.66 7.97 -40.82 -0.33 8.33 16 46 H 0.11 2.27 8.06 -52.48 -0.42 1.84 16 47 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 386.79 15.07 5.83 5.83 Total: -1.00 -34.02 386.79 -8.03 -42.05 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -6.19 Total: 11.27 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -2.65 Total: -12.83 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.10 Total: -46.06 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: 0.17 Total: -19.13 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -5.09 Total: 18.87 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.02 -8.03 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055020464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.951 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds