Wall clock time and date at job start Wed Apr 1 2020 05:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.30746 * 2 1 4 4 C 1.54390 * 110.34017 * 237.71328 * 2 1 3 5 5 N 1.48149 * 104.61804 * 264.99540 * 4 2 1 6 6 C 1.34779 * 127.83441 * 140.39405 * 5 4 2 7 7 O 1.21351 * 119.99730 * 179.97438 * 6 5 4 8 8 C 1.49450 * 119.99968 * 359.97438 * 6 5 4 9 9 N 1.34779 * 119.99968 * 179.97438 * 8 6 5 10 10 O 1.21351 * 120.00302 * 359.97438 * 8 6 5 11 11 C 1.48139 * 104.32556 * 320.41914 * 5 4 2 12 12 C 1.54289 * 110.34292 * 122.18005 * 2 1 3 13 13 H 1.08997 * 110.33958 * 237.84435 * 12 2 1 14 14 N 1.46906 * 110.33850 * 359.97438 * 12 2 1 15 15 C 1.46903 * 110.99516 * 196.43389 * 14 12 2 16 16 C 1.50705 * 109.46813 * 180.02562 * 15 14 12 17 17 C 1.38304 * 119.92902 * 90.00074 * 16 15 14 18 18 C 1.38097 * 120.06769 * 179.97438 * 17 16 15 19 19 C 1.38881 * 119.92929 * 0.02562 * 18 17 16 20 20 O 1.35749 * 120.06775 * 180.02562 * 19 18 17 21 21 C 1.34834 * 116.99824 * 5.53801 * 20 19 18 22 22 H 1.07994 * 120.00190 * 355.35797 * 21 20 19 23 23 C 1.38656 * 119.99869 * 175.36362 * 21 20 19 24 24 N 1.31564 * 120.00148 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00108 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47338 * 179.97438 * 25 23 21 27 27 H 1.48507 * 109.47216 * 299.99530 * 25 23 21 28 28 H 1.48500 * 109.47621 * 59.99560 * 25 23 21 29 29 C 1.38875 * 119.86213 * 0.27397 * 19 18 17 30 30 C 1.38103 * 119.92981 * 359.44980 * 29 19 18 31 31 H 1.09000 * 109.46699 * 303.91751 * 1 2 3 32 32 H 1.09001 * 109.47094 * 63.90940 * 1 2 3 33 33 H 1.08998 * 109.47449 * 183.91541 * 1 2 3 34 34 H 1.08997 * 110.40632 * 23.78358 * 4 2 1 35 35 H 1.09008 * 110.40673 * 146.21251 * 4 2 1 36 36 H 0.97004 * 119.99703 * 0.02562 * 9 8 6 37 37 H 0.96992 * 120.00019 * 180.02562 * 9 8 6 38 38 H 1.09009 * 110.40284 * 280.79859 * 11 5 4 39 39 H 1.09001 * 110.40984 * 158.37063 * 11 5 4 40 40 H 1.00896 * 110.99978 * 320.38792 * 14 12 2 41 41 H 1.08995 * 109.47127 * 59.99840 * 15 14 12 42 42 H 1.09002 * 109.46921 * 299.99670 * 15 14 12 43 43 H 1.08007 * 119.96302 * 359.97438 * 17 16 15 44 44 H 1.08001 * 120.03640 * 180.02562 * 18 17 16 45 45 H 0.97003 * 119.99685 * 0.02562 * 24 23 21 46 46 H 1.08003 * 120.03197 * 179.72699 * 29 19 18 47 47 H 1.07995 * 119.96214 * 180.27684 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0666 -0.7733 -1.2238 5 7 2.3139 -2.1446 -0.7206 6 6 2.0769 -3.3119 -1.3513 7 8 2.3362 -4.3621 -0.8015 8 6 1.4947 -3.3127 -2.7278 9 7 1.2582 -4.4800 -3.3587 10 8 1.2349 -2.2625 -3.2774 11 6 2.8800 -1.9417 0.6332 12 6 2.0664 -0.7705 1.2244 13 1 2.7081 -0.1266 1.8258 14 7 0.9523 -1.2799 2.0353 15 6 1.4108 -1.6655 3.3766 16 6 0.2434 -2.1826 4.1771 17 6 -0.0701 -3.5294 4.1490 18 6 -1.1390 -4.0064 4.8819 19 6 -1.8997 -3.1321 5.6472 20 8 -2.9506 -3.5981 6.3691 21 6 -3.1335 -4.9338 6.3918 22 1 -2.5054 -5.5751 5.7914 23 6 -4.1280 -5.4840 7.1860 24 7 -4.8929 -4.7028 7.9178 25 14 -4.3818 -7.3343 7.2170 26 1 -5.4983 -7.6655 8.1383 27 1 -4.7095 -7.8120 5.8496 28 1 -3.1390 -7.9967 7.6880 29 6 -1.5861 -1.7794 5.6684 30 6 -0.5125 -1.3094 4.9378 31 1 -0.3633 0.5734 0.8528 32 1 -0.3633 0.4520 -0.9229 33 1 -0.3634 -1.0252 0.0702 34 1 1.3222 -0.7889 -2.0198 35 1 2.9949 -0.3257 -1.5791 36 1 1.4655 -5.3195 -2.9192 37 1 0.8807 -4.4806 -4.2522 38 1 3.9354 -1.6766 0.5680 39 1 2.7493 -2.8389 1.2382 40 1 0.2053 -0.6038 2.0889 41 1 1.8394 -0.7975 3.8775 42 1 2.1669 -2.4461 3.2916 43 1 0.5217 -4.2087 3.5533 44 1 -1.3831 -5.0583 4.8599 45 1 -4.7613 -3.7419 7.9015 46 1 -2.1786 -1.0964 6.2591 47 1 -0.2655 -0.2583 4.9574 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001055020464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:05 Heat of formation + Delta-G solvation = -84.719277 kcal Electronic energy + Delta-G solvation = -30126.422679 eV Core-core repulsion = 25888.069101 eV Total energy + Delta-G solvation = -4238.353578 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.80902 -40.92663 -40.11552 -39.08766 -38.53628 -35.99859 -34.72710 -34.30868 -33.34442 -31.86500 -31.25749 -29.61015 -27.55729 -27.04610 -26.19231 -25.22106 -23.62524 -23.22116 -22.12792 -21.00586 -20.47801 -20.25016 -19.12568 -18.71412 -18.10935 -17.77388 -17.42232 -17.02071 -16.70925 -16.32925 -15.94052 -15.81717 -15.65859 -15.58264 -15.39592 -15.14597 -14.88019 -14.75015 -14.49130 -14.29469 -14.09908 -13.66836 -13.49845 -13.17907 -13.00617 -12.85124 -12.74627 -12.53489 -12.40502 -12.36812 -12.08494 -11.94816 -11.84589 -11.72919 -11.61826 -11.28623 -10.92963 -10.76803 -10.64420 -9.89075 -9.84996 -9.28818 -8.99820 -8.94564 -6.25994 0.32610 0.52876 0.60537 1.35578 1.46854 1.59117 1.77172 2.12299 2.34105 2.66841 2.76062 3.06660 3.31862 3.38051 3.47698 3.57529 3.63661 3.99308 4.05005 4.08805 4.14033 4.31425 4.41590 4.52619 4.53685 4.56262 4.63274 4.71098 4.76375 4.82487 4.83032 4.89454 5.00354 5.01198 5.10060 5.20796 5.21694 5.24632 5.47768 5.50541 5.61626 5.70524 5.76924 5.93903 6.04024 6.15839 6.28199 6.30379 6.50122 6.68654 6.84720 6.99338 7.60865 8.48895 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012518 B = 0.002362 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.239710 B =11853.751988 C =13214.071525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.119 0.881 4 C 0.091 3.909 5 N -0.584 5.584 6 C 0.515 3.485 7 O -0.555 6.555 8 C 0.518 3.482 9 N -0.803 5.803 10 O -0.539 6.539 11 C 0.107 3.893 12 C 0.077 3.923 13 H 0.090 0.910 14 N -0.691 5.691 15 C 0.120 3.880 16 C -0.151 4.151 17 C -0.053 4.053 18 C -0.243 4.243 19 C 0.115 3.885 20 O -0.253 6.253 21 C -0.488 4.488 22 H 0.088 0.912 23 C -0.044 4.044 24 N -0.917 5.917 25 Si 1.144 2.856 26 H -0.271 1.271 27 H -0.261 1.261 28 H -0.261 1.261 29 C -0.203 4.203 30 C -0.056 4.056 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.421 0.579 37 H 0.423 0.577 38 H 0.102 0.898 39 H 0.070 0.930 40 H 0.351 0.649 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.126 0.874 44 H 0.110 0.890 45 H 0.260 0.740 46 H 0.116 0.884 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.200 9.420 -22.035 30.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.137 0.863 4 C -0.031 4.031 5 N -0.316 5.316 6 C 0.298 3.702 7 O -0.434 6.434 8 C 0.296 3.704 9 N -0.370 5.370 10 O -0.417 6.417 11 C -0.016 4.016 12 C -0.033 4.033 13 H 0.107 0.893 14 N -0.327 5.327 15 C -0.008 4.008 16 C -0.152 4.152 17 C -0.071 4.071 18 C -0.263 4.263 19 C 0.065 3.935 20 O -0.160 6.160 21 C -0.564 4.564 22 H 0.105 0.895 23 C -0.240 4.240 24 N -0.552 5.552 25 Si 0.959 3.041 26 H -0.196 1.196 27 H -0.186 1.186 28 H -0.185 1.185 29 C -0.222 4.222 30 C -0.075 4.075 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.252 0.748 37 H 0.258 0.742 38 H 0.120 0.880 39 H 0.088 0.912 40 H 0.173 0.827 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.144 0.856 44 H 0.128 0.872 45 H 0.069 0.931 46 H 0.134 0.866 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 18.161 7.812 -21.453 29.173 hybrid contribution 0.463 1.317 -0.125 1.402 sum 18.624 9.129 -21.578 29.930 Atomic orbital electron populations 1.21707 0.94699 1.01561 1.02006 1.22305 0.96494 1.00180 0.92690 0.86285 1.23107 1.03051 0.79164 0.97772 1.48709 1.59249 1.06020 1.17654 1.19886 0.79944 0.83233 0.87122 1.90768 1.53394 1.31298 1.67901 1.19957 0.78881 0.85080 0.86450 1.43437 1.64197 1.08197 1.21159 1.90708 1.52322 1.31425 1.67219 1.22725 0.97574 0.99511 0.81773 1.22536 0.92451 0.93945 0.94373 0.89262 1.60648 1.11004 1.47721 1.13347 1.20670 0.93101 0.99755 0.87263 1.19671 1.00681 0.92760 1.02094 1.20867 0.94544 0.96159 0.95573 1.21238 1.00814 0.99939 1.04270 1.19842 0.87473 0.94481 0.91689 1.83636 1.42810 1.25609 1.63972 1.22558 1.22385 0.79895 1.31546 0.89489 1.28363 0.91467 1.12435 0.91703 1.70717 1.39066 1.06275 1.39109 0.82606 0.77871 0.65470 0.78144 1.19566 1.18609 1.18532 1.20479 1.02566 0.92004 1.07196 1.20929 0.92326 1.00163 0.94049 0.91695 0.91953 0.93917 0.88174 0.88584 0.74765 0.74222 0.87998 0.91175 0.82663 0.92316 0.90626 0.85645 0.87190 0.93144 0.86601 0.82800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 7.81 71.98 0.56 -1.55 16 2 C -0.10 -1.09 3.66 -9.88 -0.04 -1.12 16 3 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 4 C 0.09 1.26 6.15 86.53 0.53 1.80 16 5 N -0.58 -11.09 3.32 -809.51 -2.68 -13.77 16 6 C 0.52 11.87 7.98 87.27 0.70 12.57 16 7 O -0.55 -15.69 16.74 -3.25 -0.05 -15.74 16 8 C 0.52 10.18 8.14 87.27 0.71 10.89 16 9 N -0.80 -10.07 8.87 -174.49 -1.55 -11.62 16 10 O -0.54 -12.12 14.61 -3.25 -0.05 -12.17 16 11 C 0.11 1.72 6.62 86.53 0.57 2.29 16 12 C 0.08 1.01 3.35 45.82 0.15 1.16 16 13 H 0.09 0.76 7.95 -2.39 -0.02 0.74 16 14 N -0.69 -13.11 5.35 -490.87 -2.63 -15.74 16 15 C 0.12 2.47 5.60 85.56 0.48 2.95 16 16 C -0.15 -4.53 5.40 -19.83 -0.11 -4.64 16 17 C -0.05 -1.93 9.69 22.25 0.22 -1.71 16 18 C -0.24 -11.18 9.17 22.39 0.21 -10.97 16 19 C 0.11 5.82 6.65 22.58 0.15 5.97 16 20 O -0.25 -15.35 9.16 -22.78 -0.21 -15.56 16 21 C -0.49 -29.42 9.49 67.92 0.64 -28.78 16 22 H 0.09 4.96 5.20 -2.91 -0.02 4.94 16 23 C -0.04 -2.57 5.49 84.83 0.47 -2.10 16 24 N -0.92 -58.36 13.70 21.61 0.30 -58.06 16 25 Si 1.14 49.44 29.92 68.60 2.05 51.49 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 28 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 29 C -0.20 -8.44 9.99 22.39 0.22 -8.22 16 30 C -0.06 -1.76 9.69 22.25 0.22 -1.54 16 31 H 0.06 0.86 7.05 -2.39 -0.02 0.84 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.04 0.91 7.54 -2.39 -0.02 0.89 16 34 H 0.10 1.76 5.20 -2.39 -0.01 1.75 16 35 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.42 4.57 8.30 -92.71 -0.77 3.80 16 37 H 0.42 3.26 8.93 -92.71 -0.83 2.43 16 38 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.07 1.52 6.98 -2.39 -0.02 1.50 16 40 H 0.35 6.53 6.13 -89.70 -0.55 5.98 16 41 H 0.06 0.94 8.03 -2.39 -0.02 0.92 16 42 H 0.08 1.56 7.27 -2.39 -0.02 1.54 16 43 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16 44 H 0.11 5.31 5.64 -2.91 -0.02 5.30 16 45 H 0.26 17.21 7.97 -92.71 -0.74 16.48 16 46 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 47 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -81.14 386.79 -0.20 -81.34 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: -1.06 Total: 32.84 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: 5.68 Total: -23.02 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -6.56 Total: -99.19 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -0.31 Total: -43.47 kcal Atomic # 14 Polarization: 49.44 SS G_CDS: 2.05 Total: 51.49 kcal Total: -81.14 -0.20 -81.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055020464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.375 kcal (2) G-P(sol) polarization free energy of solvation -81.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds