Wall clock time and date at job start Wed Apr 1 2020 05:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.91137 * 2 1 4 4 C 1.54904 * 111.00394 * 236.09482 * 2 1 3 5 5 N 1.47423 * 104.83168 * 204.91520 * 4 2 1 6 6 C 1.36943 * 125.64934 * 204.09814 * 5 4 2 7 7 H 1.08001 * 119.99546 * 0.02562 * 6 5 4 8 8 C 1.38805 * 120.00064 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00223 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00169 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47487 * 89.99134 * 10 8 6 12 12 H 1.48492 * 109.47154 * 209.99714 * 10 8 6 13 13 H 1.48503 * 109.46626 * 329.99401 * 10 8 6 14 14 C 1.47022 * 108.70283 * 24.13240 * 5 4 2 15 15 C 1.54321 * 107.26896 * 358.93656 * 14 5 4 16 16 H 1.09000 * 110.71724 * 96.35524 * 15 14 5 17 17 N 1.46507 * 110.71958 * 219.44339 * 15 14 5 18 18 C 1.34775 * 119.99973 * 273.55054 * 17 15 14 19 19 O 1.21583 * 119.99924 * 359.97438 * 18 17 15 20 20 C 1.47603 * 120.00008 * 180.02562 * 18 17 15 21 21 C 1.39733 * 120.08908 * 180.02562 * 20 18 17 22 22 C 1.37699 * 119.91226 * 179.97438 * 21 20 18 23 23 C 1.38998 * 120.08406 * 359.97438 * 22 21 20 24 24 O 1.35713 * 119.90782 * 179.97438 * 23 22 21 25 25 C 1.42905 * 116.99825 * 179.97438 * 24 23 22 26 26 C 1.50699 * 109.46972 * 180.02562 * 25 24 23 27 27 N 1.34779 * 120.00037 * 180.02562 * 26 25 24 28 28 O 1.21282 * 120.00041 * 0.02562 * 26 25 24 29 29 C 1.38993 * 120.17940 * 0.25699 * 23 22 21 30 30 C 1.37699 * 120.08855 * 359.48608 * 29 23 22 31 31 H 1.08995 * 109.46961 * 296.09842 * 1 2 3 32 32 H 1.08995 * 109.47219 * 56.10045 * 1 2 3 33 33 H 1.09008 * 109.46967 * 176.10191 * 1 2 3 34 34 H 1.09004 * 110.36504 * 86.08104 * 4 2 1 35 35 H 1.08995 * 110.46116 * 323.80438 * 4 2 1 36 36 H 0.96998 * 120.00519 * 180.02562 * 9 8 6 37 37 H 1.09007 * 109.87719 * 239.52333 * 14 5 4 38 38 H 1.08995 * 110.01090 * 118.43382 * 14 5 4 39 39 H 0.96994 * 119.99785 * 93.55271 * 17 15 14 40 40 H 1.08003 * 120.04441 * 0.02562 * 21 20 18 41 41 H 1.07996 * 119.95600 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.47187 * 300.00272 * 25 24 23 43 43 H 1.09001 * 109.46558 * 60.00319 * 25 24 23 44 44 H 0.96996 * 119.99844 * 359.97438 * 27 26 25 45 45 H 0.96997 * 119.99871 * 180.02562 * 27 26 25 46 46 H 1.08001 * 119.95342 * 179.72335 * 29 23 22 47 47 H 1.08000 * 120.04753 * 180.27591 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4271 -1.2431 -0.7732 6 6 4.4641 -1.5666 -1.6071 7 1 4.3334 -1.5116 -2.6777 8 6 5.6831 -1.9653 -1.0762 9 7 5.8426 -2.0319 0.2285 10 14 7.0974 -2.4074 -2.2137 11 1 7.9012 -1.1919 -2.4998 12 1 7.9572 -3.4272 -1.5612 13 1 6.5580 -2.9545 -3.4845 14 6 3.4674 -1.2741 0.6961 15 6 2.0861 -0.8078 1.2022 16 1 1.4479 -1.6631 1.4240 17 7 2.2286 0.0497 2.3815 18 6 2.3022 -0.5003 3.6098 19 8 2.2498 -1.7081 3.7391 20 6 2.4451 0.3636 4.7979 21 6 2.5221 -0.2047 6.0722 22 6 2.6560 0.6047 7.1781 23 6 2.7151 1.9853 7.0280 24 8 2.8466 2.7797 8.1205 25 6 2.9016 4.1897 7.8945 26 6 3.0481 4.9044 9.2131 27 7 3.1206 6.2498 9.2460 28 8 3.1008 4.2689 10.2448 29 6 2.6341 2.5547 5.7627 30 6 2.5055 1.7520 4.6513 31 1 -0.3633 0.4521 0.9228 32 1 -0.3633 0.5731 -0.8529 33 1 -0.3633 -1.0254 -0.0699 34 1 2.1560 -0.1720 -2.0836 35 1 1.4525 -1.6704 -1.4042 36 1 6.6945 -2.3101 0.5995 37 1 4.2426 -0.5996 1.0600 38 1 3.6663 -2.2883 1.0424 39 1 2.2700 1.0132 2.2784 40 1 2.4775 -1.2774 6.1894 41 1 2.7151 0.1663 8.1633 42 1 3.7555 4.4227 7.2584 43 1 1.9839 4.5151 7.4045 44 1 3.0788 6.7580 8.4209 45 1 3.2153 6.7098 10.0947 46 1 2.6760 3.6281 5.6507 47 1 2.4470 2.1949 3.6681 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080083327.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:11 Heat of formation + Delta-G solvation = -53.866086 kcal Electronic energy + Delta-G solvation = -29659.453796 eV Core-core repulsion = 25422.438113 eV Total energy + Delta-G solvation = -4237.015683 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.83957 -39.91941 -39.17708 -37.75926 -36.82057 -34.30079 -33.96182 -32.71163 -31.35096 -30.62401 -30.36266 -28.86270 -27.50880 -25.62528 -24.09562 -23.25826 -22.93528 -21.26184 -20.64690 -20.02972 -19.60039 -18.83280 -18.17900 -17.46792 -16.89272 -16.84236 -16.74176 -16.21029 -15.51824 -15.06395 -14.94730 -14.76227 -14.37684 -14.30687 -14.02620 -13.76817 -13.67559 -13.29802 -13.09166 -12.78364 -12.76877 -12.71299 -12.41532 -11.97951 -11.69194 -11.40054 -11.33175 -11.17460 -11.01186 -10.77299 -10.59623 -10.49183 -10.37964 -10.31381 -9.96413 -9.91737 -9.70856 -9.54099 -9.27631 -8.62666 -8.56427 -8.34893 -6.81484 -5.66816 -3.02443 0.82415 1.13693 2.00473 2.19149 2.99613 3.31800 3.41410 3.46157 3.49195 3.50517 3.88920 4.14680 4.37434 4.46928 4.51756 4.53129 4.58894 4.86469 5.04054 5.09595 5.21583 5.31159 5.40746 5.44365 5.56541 5.74169 5.76224 5.88130 5.97245 5.98976 6.02855 6.14771 6.15026 6.19368 6.28689 6.36618 6.42233 6.49954 6.62916 6.64540 6.78921 6.94128 6.99196 7.59221 7.61142 7.63980 7.87341 7.93291 8.28085 8.59935 9.23794 9.84517 10.49381 11.43620 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013664 B = 0.002118 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.683597 B =13214.386344 C =13935.280458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.231 4.231 7 H 0.079 0.921 8 C -0.008 4.008 9 N -0.918 5.918 10 Si 0.912 3.088 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.173 3.827 15 C 0.121 3.879 16 H 0.088 0.912 17 N -0.708 5.708 18 C 0.558 3.442 19 O -0.535 6.535 20 C -0.160 4.160 21 C -0.019 4.019 22 C -0.154 4.154 23 C 0.145 3.855 24 O -0.288 6.288 25 C 0.037 3.963 26 C 0.520 3.480 27 N -0.851 5.851 28 O -0.517 6.517 29 C -0.219 4.219 30 C -0.044 4.044 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.022 0.978 36 H 0.252 0.748 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.393 0.607 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.404 0.596 45 H 0.409 0.591 46 H 0.132 0.868 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.207 18.876 13.481 25.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.359 4.359 7 H 0.097 0.903 8 C -0.205 4.205 9 N -0.565 5.565 10 Si 0.742 3.258 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.048 3.952 15 C 0.016 3.984 16 H 0.106 0.894 17 N -0.359 5.359 18 C 0.345 3.655 19 O -0.412 6.412 20 C -0.163 4.163 21 C -0.038 4.038 22 C -0.173 4.173 23 C 0.099 3.901 24 O -0.200 6.200 25 C -0.042 4.042 26 C 0.303 3.697 27 N -0.418 5.418 28 O -0.391 6.391 29 C -0.238 4.238 30 C -0.063 4.063 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.228 0.772 40 H 0.164 0.836 41 H 0.157 0.843 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.232 0.768 45 H 0.241 0.759 46 H 0.150 0.850 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.987 17.250 14.346 24.558 hybrid contribution 0.976 1.019 -0.916 1.682 sum -9.011 18.269 13.430 24.399 Atomic orbital electron populations 1.21704 0.95025 1.01863 1.00939 1.22609 0.94816 0.99456 0.96457 0.90517 1.21582 0.87687 0.95026 0.94260 1.44414 1.07827 1.79225 1.01814 1.19037 0.89310 1.38658 0.88906 0.90347 1.24837 0.97907 1.01720 0.96004 1.69973 1.24157 1.53180 1.09170 0.86126 0.82346 0.77784 0.79529 1.21676 1.21676 1.20689 1.21475 0.90004 1.00512 0.83256 1.22508 1.00371 0.92707 0.82776 0.89432 1.45833 1.74068 1.10015 1.05965 1.18052 0.76765 0.87738 0.82969 1.90790 1.49886 1.14340 1.86222 1.20022 1.08461 0.93457 0.94378 1.21141 0.91882 1.00832 0.89955 1.20411 1.06818 0.89803 1.00236 1.19240 0.94726 0.90794 0.85306 1.86117 1.87699 1.15700 1.30488 1.22479 1.04242 0.81305 0.96141 1.20066 0.76265 0.82840 0.90537 1.43653 1.77985 1.06646 1.13483 1.90828 1.47467 1.65979 1.34823 1.21096 1.10501 1.00383 0.91771 1.21103 0.94341 0.92395 0.98489 0.93110 0.92792 0.92532 0.94026 0.96019 0.93709 0.93186 0.93336 0.77238 0.83637 0.84332 0.88462 0.88540 0.76778 0.75912 0.85033 0.85140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.31 37.16 0.35 -1.43 16 2 C -0.11 -1.85 3.25 -88.47 -0.29 -2.14 16 3 H 0.08 1.18 8.00 -51.93 -0.42 0.77 16 4 C 0.14 2.84 6.70 -2.53 -0.02 2.82 16 5 N -0.61 -15.53 3.39 -170.08 -0.58 -16.11 16 6 C -0.23 -6.48 10.28 -15.06 -0.15 -6.63 16 7 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -27.71 10.31 55.49 0.57 -27.14 16 10 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.17 4.32 5.12 -3.07 -0.02 4.31 16 15 C 0.12 2.31 2.70 -66.10 -0.18 2.13 16 16 H 0.09 1.78 7.59 -51.93 -0.39 1.38 16 17 N -0.71 -11.39 5.08 -53.05 -0.27 -11.66 16 18 C 0.56 9.67 7.76 -12.44 -0.10 9.58 16 19 O -0.53 -11.46 16.06 5.29 0.09 -11.37 16 20 C -0.16 -2.20 5.87 -104.96 -0.62 -2.82 16 21 C -0.02 -0.25 9.58 -39.22 -0.38 -0.63 16 22 C -0.15 -1.77 9.97 -39.50 -0.39 -2.17 16 23 C 0.15 1.55 6.70 -39.02 -0.26 1.29 16 24 O -0.29 -3.04 9.66 -38.75 -0.37 -3.42 16 25 C 0.04 0.23 5.21 36.01 0.19 0.41 16 26 C 0.52 3.89 8.18 -10.99 -0.09 3.80 16 27 N -0.85 -2.38 8.87 31.22 0.28 -2.11 16 28 O -0.52 -6.72 17.34 -14.35 -0.25 -6.97 16 29 C -0.22 -1.97 9.01 -39.50 -0.36 -2.33 16 30 C -0.04 -0.47 9.53 -39.22 -0.37 -0.84 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.75 8.08 -51.92 -0.42 0.33 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.02 0.44 7.99 -51.93 -0.41 0.03 16 36 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.05 1.37 7.27 -51.92 -0.38 1.00 16 38 H 0.05 1.42 7.50 -51.93 -0.39 1.03 16 39 H 0.39 5.02 6.54 -40.82 -0.27 4.75 16 40 H 0.15 1.91 7.64 -52.48 -0.40 1.51 16 41 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.10 0.36 7.66 -51.93 -0.40 -0.03 16 43 H 0.10 0.32 7.64 -51.93 -0.40 -0.08 16 44 H 0.40 -0.25 8.83 -40.82 -0.36 -0.61 16 45 H 0.41 0.90 8.93 -40.82 -0.36 0.53 16 46 H 0.13 0.72 6.28 -52.49 -0.33 0.39 16 47 H 0.13 1.09 6.39 -52.49 -0.34 0.75 16 LS Contribution 391.23 15.07 5.90 5.90 Total: -1.00 -39.03 391.23 -8.94 -47.97 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.50 Total: 2.51 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -2.78 Total: 5.03 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: 0.00 Total: -57.02 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.54 Total: -21.76 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -39.03 -8.94 -47.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080083327.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.891 kcal (2) G-P(sol) polarization free energy of solvation -39.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds