Wall clock time and date at job start Wed Apr 1 2020 05:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.78437 * 2 1 4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3 5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1 6 6 C 1.36936 * 125.64899 * 178.89496 * 5 4 2 7 7 H 1.07997 * 119.99931 * 0.02562 * 6 5 4 8 8 C 1.38819 * 120.00094 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99956 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99883 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47090 * 90.00295 * 10 8 6 12 12 H 1.48500 * 109.46944 * 210.00181 * 10 8 6 13 13 H 1.48498 * 109.47226 * 330.00384 * 10 8 6 14 14 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 15 15 C 1.54914 * 104.82992 * 24.12623 * 14 5 4 16 16 H 1.09000 * 111.00339 * 81.07133 * 15 14 5 17 17 N 1.46502 * 111.00105 * 204.88119 * 15 14 5 18 18 C 1.34783 * 119.99989 * 273.54475 * 17 15 14 19 19 O 1.21592 * 119.99673 * 0.02562 * 18 17 15 20 20 C 1.47518 * 119.99897 * 180.02562 * 18 17 15 21 21 C 1.39862 * 120.71489 * 359.72420 * 20 18 17 22 22 C 1.38611 * 118.63594 * 179.71246 * 21 20 18 23 23 C 1.38102 * 119.53883 * 0.34095 * 22 21 20 24 24 N 1.32441 * 120.62879 * 0.05800 * 23 22 21 25 25 C 1.31992 * 122.28509 * 359.76283 * 24 23 22 26 26 O 1.35433 * 119.83168 * 180.02562 * 25 24 23 27 27 C 1.50918 * 121.01980 * 180.38992 * 23 22 21 28 28 C 1.52920 * 109.78670 * 342.65703 * 27 23 22 29 29 O 1.43204 * 108.54740 * 49.51189 * 28 27 23 30 30 C 1.42742 * 113.07370 * 289.28214 * 29 28 27 31 31 H 1.08999 * 109.47083 * 181.78943 * 1 2 3 32 32 H 1.09002 * 109.47293 * 301.78952 * 1 2 3 33 33 H 1.09000 * 109.47062 * 61.79046 * 1 2 3 34 34 H 1.09002 * 109.88192 * 100.02756 * 4 2 1 35 35 H 1.09000 * 109.88128 * 339.01609 * 4 2 1 36 36 H 0.96998 * 120.00119 * 179.97438 * 9 8 6 37 37 H 1.08999 * 110.36956 * 142.96999 * 14 5 4 38 38 H 1.09001 * 110.36709 * 265.18192 * 14 5 4 39 39 H 0.96999 * 120.00092 * 93.54637 * 17 15 14 40 40 H 1.08002 * 120.67730 * 359.97438 * 21 20 18 41 41 H 0.96699 * 113.99415 * 269.97462 * 26 25 24 42 42 H 1.09000 * 109.41802 * 102.75167 * 27 23 22 43 43 H 1.09003 * 109.41488 * 222.55917 * 27 23 22 44 44 H 1.08996 * 109.62357 * 289.79099 * 28 27 23 45 45 H 1.08998 * 109.78362 * 169.32194 * 28 27 23 46 46 H 1.09002 * 109.33918 * 291.36812 * 30 29 28 47 47 H 1.09004 * 109.21100 * 171.77315 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2438 -1.5535 -0.7414 6 6 4.0004 -2.4008 -1.5061 7 1 3.7556 -2.5530 -2.5468 8 6 5.0829 -3.0634 -0.9437 9 7 5.3817 -2.8776 0.3246 10 14 6.1156 -4.2187 -1.9870 11 1 7.2252 -3.4587 -2.6165 12 1 6.6759 -5.2932 -1.1287 13 1 5.2665 -4.8225 -3.0451 14 6 3.4656 -1.2541 0.6849 15 6 2.0831 -0.7972 1.2139 16 1 1.4480 -1.6542 1.4382 17 7 2.2294 0.0660 2.3885 18 6 2.3245 -0.4788 3.6176 19 8 2.2893 -1.6868 3.7514 20 6 2.4712 0.3905 4.8004 21 6 2.5192 1.7815 4.6630 22 6 2.6519 2.5575 5.8039 23 6 2.7401 1.9441 7.0381 24 7 2.7002 0.6242 7.1400 25 6 2.5716 -0.1607 6.0866 26 8 2.5358 -1.5048 6.2483 27 6 2.8765 2.7567 8.3025 28 6 3.3227 4.1783 7.9586 29 8 2.4758 4.6828 6.9197 30 6 2.7037 4.0552 5.6581 31 1 -0.3633 -1.0272 0.0321 32 1 -0.3634 0.5414 0.8735 33 1 -0.3633 0.4858 -0.9056 34 1 2.3741 -0.1026 -1.9977 35 1 1.3121 -1.4741 -1.5791 36 1 6.1378 -3.3408 0.7177 37 1 3.7975 -2.1479 1.2131 38 1 4.1987 -0.4550 0.7952 39 1 2.2578 1.0297 2.2816 40 1 2.4499 2.2417 3.6884 41 1 3.4044 -1.9284 6.2123 42 1 1.9155 2.7926 8.8156 43 1 3.6168 2.2920 8.9537 44 1 4.3565 4.1641 7.6136 45 1 3.2396 4.8144 8.8398 46 1 3.6839 4.3476 5.2813 47 1 1.9360 4.3762 4.9540 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080756916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:02 Heat of formation + Delta-G solvation = -52.628280 kcal Electronic energy + Delta-G solvation = -30906.406566 eV Core-core repulsion = 26669.444557 eV Total energy + Delta-G solvation = -4236.962008 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.32757 -39.58133 -38.65844 -37.37244 -36.83482 -34.22154 -33.66847 -32.61373 -32.01105 -30.78731 -30.38490 -27.77164 -25.87450 -25.70869 -25.24499 -23.71154 -23.11886 -22.03573 -20.58710 -20.13143 -19.59153 -18.66446 -17.65183 -17.54991 -16.90552 -16.53620 -16.33900 -15.75766 -15.36814 -15.24146 -14.91557 -14.63172 -14.34225 -14.06530 -13.89666 -13.73176 -13.58984 -13.15286 -13.00110 -12.87591 -12.54310 -12.46259 -12.26524 -12.01629 -11.74458 -11.72306 -11.36630 -11.26564 -11.11318 -10.80361 -10.67030 -10.49829 -10.40045 -10.03472 -9.99883 -9.89930 -9.79907 -9.73966 -9.39642 -8.93258 -8.66463 -8.49463 -6.85477 -5.64519 -3.08174 0.37738 0.77632 2.81868 3.18351 3.33298 3.40222 3.44984 3.47603 3.49751 3.64371 4.08618 4.13759 4.27662 4.48295 4.54681 4.65854 4.73106 4.92243 4.96386 5.03691 5.12615 5.17389 5.25200 5.26809 5.29687 5.39614 5.49873 5.51630 5.52676 5.70898 5.76278 5.91939 5.99983 6.09193 6.11594 6.22394 6.34113 6.44136 6.59315 6.63449 6.74152 6.90797 7.38200 7.44497 7.60554 7.64237 7.77793 7.90235 8.36193 8.50565 9.20338 9.81695 10.44591 11.38322 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.002694 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.343669 B =10390.585395 C =11063.803600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.073 0.927 4 C 0.141 3.859 5 N -0.603 5.603 6 C -0.226 4.226 7 H 0.079 0.921 8 C -0.010 4.010 9 N -0.918 5.918 10 Si 0.915 3.085 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.149 3.851 15 C 0.122 3.878 16 H 0.091 0.909 17 N -0.709 5.709 18 C 0.558 3.442 19 O -0.508 6.508 20 C -0.194 4.194 21 C -0.021 4.021 22 C -0.195 4.195 23 C 0.182 3.818 24 N -0.509 5.509 25 C 0.378 3.622 26 O -0.458 6.458 27 C -0.106 4.106 28 C 0.059 3.941 29 O -0.372 6.372 30 C 0.109 3.891 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.023 0.977 35 H 0.028 0.972 36 H 0.252 0.748 37 H 0.113 0.887 38 H 0.012 0.988 39 H 0.390 0.610 40 H 0.145 0.855 41 H 0.409 0.591 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.060 0.940 45 H 0.107 0.893 46 H 0.072 0.928 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.845 16.793 13.569 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 H 0.091 0.909 4 C 0.015 3.985 5 N -0.329 5.329 6 C -0.355 4.355 7 H 0.097 0.903 8 C -0.206 4.206 9 N -0.566 5.566 10 Si 0.745 3.255 11 H -0.217 1.217 12 H -0.216 1.216 13 H -0.206 1.206 14 C 0.023 3.977 15 C 0.017 3.983 16 H 0.109 0.891 17 N -0.360 5.360 18 C 0.343 3.657 19 O -0.383 6.383 20 C -0.201 4.201 21 C -0.048 4.048 22 C -0.197 4.197 23 C 0.045 3.955 24 N -0.229 5.229 25 C 0.197 3.803 26 O -0.266 6.266 27 C -0.144 4.144 28 C -0.019 4.019 29 O -0.290 6.290 30 C 0.032 3.968 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.041 0.959 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.131 0.869 38 H 0.030 0.970 39 H 0.224 0.776 40 H 0.163 0.837 41 H 0.269 0.731 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.079 0.921 45 H 0.125 0.875 46 H 0.090 0.910 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.361 15.493 14.521 22.166 hybrid contribution 1.218 -0.135 -1.535 1.964 sum -5.144 15.357 12.986 20.759 Atomic orbital electron populations 1.21741 0.94859 1.01991 1.00924 1.22466 0.95256 0.99088 0.96246 0.90856 1.21330 0.90332 0.93193 0.93664 1.44389 1.30966 1.50352 1.07219 1.19061 1.06352 1.17153 0.92888 0.90322 1.24822 0.98787 1.00544 0.96404 1.69798 1.29883 1.45983 1.10907 0.86069 0.80164 0.80285 0.78939 1.21664 1.21615 1.20640 1.22228 0.89184 1.01200 0.85051 1.22789 1.01153 0.92256 0.82142 0.89056 1.45771 1.74296 1.09813 1.06121 1.17665 0.77895 0.87712 0.82422 1.90862 1.48193 1.13656 1.85561 1.21259 1.09161 0.94478 0.95208 1.21542 0.92409 0.91890 0.98909 1.21010 1.06313 0.98492 0.93881 1.20803 0.92032 0.88520 0.94157 1.67097 1.16011 1.05566 1.34181 1.19060 0.89968 0.85355 0.85961 1.84703 1.34852 1.12897 1.94179 1.21160 1.04631 0.94500 0.94063 1.22698 0.94018 0.93383 0.91762 1.88108 1.61401 1.61353 1.18160 1.21373 1.02615 0.86160 0.86650 0.92397 0.93154 0.92741 0.95863 0.95418 0.93690 0.86918 0.96988 0.77557 0.83707 0.73061 0.88370 0.88187 0.92138 0.87470 0.91028 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.14 37.15 0.34 -1.49 16 2 C -0.11 -1.80 3.19 -88.65 -0.28 -2.09 16 3 H 0.07 1.06 8.00 -51.93 -0.42 0.65 16 4 C 0.14 2.86 6.83 -3.07 -0.02 2.84 16 5 N -0.60 -15.43 3.39 -170.07 -0.58 -16.00 16 6 C -0.23 -6.33 10.27 -15.06 -0.15 -6.49 16 7 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 8 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 9 N -0.92 -27.22 10.09 55.49 0.56 -26.66 16 10 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.15 3.65 5.58 -2.53 -0.01 3.64 16 15 C 0.12 2.31 2.77 -65.64 -0.18 2.13 16 16 H 0.09 1.94 7.63 -51.93 -0.40 1.55 16 17 N -0.71 -11.07 5.19 -52.64 -0.27 -11.35 16 18 C 0.56 9.61 7.77 -12.47 -0.10 9.52 16 19 O -0.51 -10.84 14.96 -16.41 -0.25 -11.09 16 20 C -0.19 -2.75 5.90 -104.74 -0.62 -3.37 16 21 C -0.02 -0.23 9.27 -38.84 -0.36 -0.59 16 22 C -0.19 -1.91 5.80 -104.60 -0.61 -2.52 16 23 C 0.18 2.01 6.68 -82.27 -0.55 1.46 16 24 N -0.51 -6.93 10.23 -9.14 -0.09 -7.02 16 25 C 0.38 5.61 7.77 -16.71 -0.13 5.48 16 26 O -0.46 -7.06 11.68 -39.68 -0.46 -7.52 16 27 C -0.11 -0.81 6.23 -27.82 -0.17 -0.98 16 28 C 0.06 0.36 6.84 37.12 0.25 0.61 16 29 O -0.37 -3.07 10.81 -35.23 -0.38 -3.45 16 30 C 0.11 0.79 6.66 35.94 0.24 1.03 16 31 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.03 0.56 7.82 -51.93 -0.41 0.15 16 36 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.11 3.26 5.87 -51.93 -0.31 2.95 16 38 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.39 4.66 6.63 -40.82 -0.27 4.39 16 40 H 0.15 1.08 6.51 -52.49 -0.34 0.74 16 41 H 0.41 4.83 9.06 45.56 0.41 5.24 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.32 8.07 -51.93 -0.42 -0.09 16 45 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 380.56 15.07 5.73 5.73 Total: -1.00 -36.05 380.56 -9.13 -45.18 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.91 Total: 6.11 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -2.45 Total: 8.82 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.38 Total: -61.03 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -1.09 Total: -22.06 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.05 -9.13 -45.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080756916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.447 kcal (2) G-P(sol) polarization free energy of solvation -36.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds