Wall clock time and date at job start Wed Apr 1 2020 05:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.78437 * 2 1 4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3 5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1 6 6 C 1.36936 * 125.64899 * 178.89496 * 5 4 2 7 7 H 1.07997 * 119.99931 * 0.02562 * 6 5 4 8 8 C 1.38819 * 120.00094 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99956 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99883 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47090 * 90.00295 * 10 8 6 12 12 H 1.48500 * 109.46944 * 210.00181 * 10 8 6 13 13 H 1.48498 * 109.47226 * 330.00384 * 10 8 6 14 14 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 15 15 C 1.54914 * 104.82992 * 24.12623 * 14 5 4 16 16 H 1.09000 * 111.00339 * 81.07133 * 15 14 5 17 17 N 1.46502 * 111.00105 * 204.88119 * 15 14 5 18 18 C 1.34783 * 119.99989 * 273.54475 * 17 15 14 19 19 O 1.21592 * 119.99673 * 0.02562 * 18 17 15 20 20 C 1.47518 * 119.99897 * 180.02562 * 18 17 15 21 21 C 1.39862 * 120.71489 * 359.72420 * 20 18 17 22 22 C 1.38611 * 118.63594 * 179.71246 * 21 20 18 23 23 C 1.38102 * 119.53883 * 0.34095 * 22 21 20 24 24 N 1.32441 * 120.62879 * 0.05800 * 23 22 21 25 25 C 1.31992 * 122.28509 * 359.76283 * 24 23 22 26 26 O 1.35433 * 119.83168 * 180.02562 * 25 24 23 27 27 C 1.50918 * 121.01980 * 180.38992 * 23 22 21 28 28 C 1.52920 * 109.78670 * 342.65703 * 27 23 22 29 29 O 1.43204 * 108.54740 * 49.51189 * 28 27 23 30 30 C 1.42742 * 113.07370 * 289.28214 * 29 28 27 31 31 H 1.08999 * 109.47083 * 181.78943 * 1 2 3 32 32 H 1.09002 * 109.47293 * 301.78952 * 1 2 3 33 33 H 1.09000 * 109.47062 * 61.79046 * 1 2 3 34 34 H 1.09002 * 109.88192 * 100.02756 * 4 2 1 35 35 H 1.09000 * 109.88128 * 339.01609 * 4 2 1 36 36 H 0.96998 * 120.00119 * 179.97438 * 9 8 6 37 37 H 1.08999 * 110.36956 * 142.96999 * 14 5 4 38 38 H 1.09001 * 110.36709 * 265.18192 * 14 5 4 39 39 H 0.96999 * 120.00092 * 93.54637 * 17 15 14 40 40 H 1.08002 * 120.67730 * 359.97438 * 21 20 18 41 41 H 0.96699 * 113.99415 * 269.97462 * 26 25 24 42 42 H 1.09000 * 109.41802 * 102.75167 * 27 23 22 43 43 H 1.09003 * 109.41488 * 222.55917 * 27 23 22 44 44 H 1.08996 * 109.62357 * 289.79099 * 28 27 23 45 45 H 1.08998 * 109.78362 * 169.32194 * 28 27 23 46 46 H 1.09002 * 109.33918 * 291.36812 * 30 29 28 47 47 H 1.09004 * 109.21100 * 171.77315 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2438 -1.5535 -0.7414 6 6 4.0004 -2.4008 -1.5061 7 1 3.7556 -2.5530 -2.5468 8 6 5.0829 -3.0634 -0.9437 9 7 5.3817 -2.8776 0.3246 10 14 6.1156 -4.2187 -1.9870 11 1 7.2252 -3.4587 -2.6165 12 1 6.6759 -5.2932 -1.1287 13 1 5.2665 -4.8225 -3.0451 14 6 3.4656 -1.2541 0.6849 15 6 2.0831 -0.7972 1.2139 16 1 1.4480 -1.6542 1.4382 17 7 2.2294 0.0660 2.3885 18 6 2.3245 -0.4788 3.6176 19 8 2.2893 -1.6868 3.7514 20 6 2.4712 0.3905 4.8004 21 6 2.5192 1.7815 4.6630 22 6 2.6519 2.5575 5.8039 23 6 2.7401 1.9441 7.0381 24 7 2.7002 0.6242 7.1400 25 6 2.5716 -0.1607 6.0866 26 8 2.5358 -1.5048 6.2483 27 6 2.8765 2.7567 8.3025 28 6 3.3227 4.1783 7.9586 29 8 2.4758 4.6828 6.9197 30 6 2.7037 4.0552 5.6581 31 1 -0.3633 -1.0272 0.0321 32 1 -0.3634 0.5414 0.8735 33 1 -0.3633 0.4858 -0.9056 34 1 2.3741 -0.1026 -1.9977 35 1 1.3121 -1.4741 -1.5791 36 1 6.1378 -3.3408 0.7177 37 1 3.7975 -2.1479 1.2131 38 1 4.1987 -0.4550 0.7952 39 1 2.2578 1.0297 2.2816 40 1 2.4499 2.2417 3.6884 41 1 3.4044 -1.9284 6.2123 42 1 1.9155 2.7926 8.8156 43 1 3.6168 2.2920 8.9537 44 1 4.3565 4.1641 7.6136 45 1 3.2396 4.8144 8.8398 46 1 3.6839 4.3476 5.2813 47 1 1.9360 4.3762 4.9540 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080756916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:01 Heat of formation + Delta-G solvation = -81.779289 kcal Electronic energy + Delta-G solvation = -30907.670648 eV Core-core repulsion = 26669.444557 eV Total energy + Delta-G solvation = -4238.226091 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.26722 -40.80458 -39.67691 -38.85721 -37.79905 -35.72284 -34.90683 -34.07271 -32.80957 -32.18572 -31.62215 -29.42819 -27.41479 -26.60567 -26.21068 -25.22998 -23.96599 -23.17654 -22.02341 -21.60863 -20.96608 -19.71144 -18.96148 -18.58506 -18.51397 -17.33329 -17.32293 -17.04743 -16.89716 -16.14774 -16.01755 -15.75761 -15.64184 -15.56163 -14.90046 -14.82757 -14.59249 -14.42282 -14.33369 -14.12829 -13.91076 -13.76951 -13.37783 -13.14027 -13.04453 -12.88986 -12.85917 -12.62934 -12.59704 -12.21932 -12.06071 -11.88941 -11.84090 -11.66960 -11.42637 -11.39007 -11.02260 -10.77660 -10.69476 -10.53204 -10.08344 -9.77268 -8.91025 -7.78281 -5.24703 -0.61048 -0.11134 1.43731 1.46505 1.55220 1.69993 1.96828 2.32431 2.48069 2.58702 2.91202 3.25439 3.31246 3.36974 3.51800 3.59691 3.66210 3.80602 3.98262 4.02496 4.09098 4.12588 4.17093 4.30379 4.42276 4.50225 4.57393 4.60679 4.62752 4.65058 4.73857 4.80759 4.89275 4.93254 5.02828 5.05825 5.09024 5.19133 5.26399 5.28640 5.44546 5.49693 5.61479 5.80135 6.09544 6.27437 6.39846 6.52822 6.68832 7.06103 7.20971 7.75900 8.38012 9.22006 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.002694 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.343669 B =10390.585395 C =11063.803600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.091 4.091 3 H 0.103 0.897 4 C 0.132 3.868 5 N -0.627 5.627 6 C -0.239 4.239 7 H 0.086 0.914 8 C -0.071 4.071 9 N -0.948 5.948 10 Si 0.981 3.019 11 H -0.283 1.283 12 H -0.298 1.298 13 H -0.267 1.267 14 C 0.158 3.842 15 C 0.139 3.861 16 H 0.064 0.936 17 N -0.693 5.693 18 C 0.557 3.443 19 O -0.561 6.561 20 C -0.214 4.214 21 C -0.008 4.008 22 C -0.186 4.186 23 C 0.173 3.827 24 N -0.528 5.528 25 C 0.355 3.645 26 O -0.480 6.480 27 C -0.105 4.105 28 C 0.059 3.941 29 O -0.385 6.385 30 C 0.108 3.892 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.035 0.965 35 H 0.029 0.971 36 H 0.244 0.756 37 H 0.061 0.939 38 H -0.007 1.007 39 H 0.412 0.588 40 H 0.181 0.819 41 H 0.416 0.584 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.070 0.930 45 H 0.132 0.868 46 H 0.093 0.907 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.767 20.537 13.052 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.111 4.111 3 H 0.121 0.879 4 C 0.007 3.993 5 N -0.353 5.353 6 C -0.368 4.368 7 H 0.104 0.896 8 C -0.263 4.263 9 N -0.598 5.598 10 Si 0.809 3.191 11 H -0.210 1.210 12 H -0.224 1.224 13 H -0.192 1.192 14 C 0.031 3.969 15 C 0.032 3.968 16 H 0.082 0.918 17 N -0.345 5.345 18 C 0.344 3.656 19 O -0.440 6.440 20 C -0.221 4.221 21 C -0.034 4.034 22 C -0.189 4.189 23 C 0.036 3.964 24 N -0.248 5.248 25 C 0.174 3.826 26 O -0.290 6.290 27 C -0.143 4.143 28 C -0.017 4.017 29 O -0.304 6.304 30 C 0.031 3.969 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.011 0.989 39 H 0.251 0.749 40 H 0.198 0.802 41 H 0.277 0.723 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.088 0.912 45 H 0.149 0.851 46 H 0.111 0.889 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.313 19.308 13.983 24.936 hybrid contribution 1.508 -1.221 -1.308 2.340 sum -5.806 18.086 12.674 22.836 Atomic orbital electron populations 1.21705 0.91979 1.01866 1.03264 1.22424 0.97389 0.99180 0.92081 0.87878 1.21609 0.88606 0.93343 0.95750 1.44694 1.32170 1.50791 1.07688 1.19486 1.06515 1.17247 0.93526 0.89620 1.25708 1.00435 1.02564 0.97585 1.70116 1.30061 1.47029 1.12550 0.85036 0.78607 0.77995 0.77456 1.20997 1.22437 1.19170 1.21870 0.91848 0.98369 0.84809 1.22242 0.97347 0.92899 0.84275 0.91760 1.45492 1.73675 1.10580 1.04740 1.18170 0.76503 0.87457 0.83462 1.90834 1.50578 1.16171 1.86379 1.20991 1.12061 0.95705 0.93355 1.21880 0.90489 0.90102 1.00912 1.21404 1.04264 1.00248 0.92943 1.21552 0.90654 0.87918 0.96306 1.67135 1.16932 1.06890 1.33843 1.19268 0.91326 0.85148 0.86822 1.84651 1.35860 1.14085 1.94356 1.21311 1.05177 0.95152 0.92664 1.22867 0.94126 0.92416 0.92333 1.88105 1.62084 1.61421 1.18754 1.21610 1.04596 0.83694 0.86964 0.93849 0.90963 0.90207 0.94657 0.95270 0.94663 0.92088 0.98936 0.74941 0.80196 0.72297 0.88014 0.87366 0.91154 0.85059 0.88948 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 9.14 71.98 0.66 -2.38 16 2 C -0.09 -2.76 3.19 -9.52 -0.03 -2.79 16 3 H 0.10 2.55 8.00 -2.39 -0.02 2.53 16 4 C 0.13 5.20 6.83 86.73 0.59 5.79 16 5 N -0.63 -32.70 3.39 -691.98 -2.35 -35.05 16 6 C -0.24 -13.61 10.27 84.04 0.86 -12.75 16 7 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 8 C -0.07 -4.12 5.49 84.86 0.47 -3.66 16 9 N -0.95 -59.08 10.09 21.65 0.22 -58.87 16 10 Si 0.98 46.87 29.55 68.60 2.03 48.90 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 13 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 14 C 0.16 8.03 5.58 86.86 0.49 8.51 16 15 C 0.14 5.32 2.77 46.47 0.13 5.45 16 16 H 0.06 2.85 7.63 -2.39 -0.02 2.83 16 17 N -0.69 -21.22 5.19 -438.70 -2.28 -23.50 16 18 C 0.56 19.76 7.77 86.69 0.67 20.43 16 19 O -0.56 -25.68 14.96 16.74 0.25 -25.43 16 20 C -0.21 -6.08 5.90 -19.94 -0.12 -6.20 16 21 C -0.01 -0.15 9.27 22.75 0.21 0.06 16 22 C -0.19 -3.14 5.80 -19.85 -0.12 -3.26 16 23 C 0.17 3.55 6.68 42.50 0.28 3.83 16 24 N -0.53 -14.47 10.23 -295.96 -3.03 -17.49 16 25 C 0.36 10.98 7.77 85.17 0.66 11.64 16 26 O -0.48 -16.10 11.68 -66.55 -0.78 -16.87 16 27 C -0.11 -1.38 6.23 29.89 0.19 -1.19 16 28 C 0.06 0.52 6.84 71.96 0.49 1.01 16 29 O -0.39 -4.88 10.81 -148.98 -1.61 -6.49 16 30 C 0.11 1.11 6.66 71.20 0.47 1.58 16 31 H 0.04 1.14 8.13 -2.39 -0.02 1.12 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.03 1.14 7.82 -2.39 -0.02 1.13 16 36 H 0.24 14.88 8.31 -92.71 -0.77 14.11 16 37 H 0.06 3.78 5.87 -2.39 -0.01 3.76 16 38 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H 0.41 8.71 6.63 -92.71 -0.61 8.09 16 40 H 0.18 1.91 6.51 -2.91 -0.02 1.89 16 41 H 0.42 11.29 9.06 -74.06 -0.67 10.62 16 42 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 0.50 8.07 -2.39 -0.02 0.48 16 45 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.13 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -84.96 380.56 -1.89 -86.85 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -0.26 Total: 21.86 kcal Atomic # 6 Polarization: 20.19 SS G_CDS: 5.91 Total: 26.10 kcal Atomic # 7 Polarization: -127.47 SS G_CDS: -7.43 Total: -134.90 kcal Atomic # 8 Polarization: -46.66 SS G_CDS: -2.14 Total: -48.80 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -84.96 -1.89 -86.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080756916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.069 kcal (2) G-P(sol) polarization free energy of solvation -84.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds