Wall clock time and date at job start Wed Apr 1 2020 06:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46543 * 2 1 4 4 C 1.50696 * 109.47062 * 239.99959 * 2 1 3 5 5 O 1.21288 * 119.99641 * 239.99888 * 4 2 1 6 6 N 1.34769 * 120.00248 * 60.00147 * 4 2 1 7 7 C 1.46503 * 120.00157 * 179.97438 * 6 4 2 8 8 H 1.08996 * 110.85381 * 322.66284 * 7 6 4 9 9 C 1.54636 * 110.96908 * 86.45432 * 7 6 4 10 10 C 1.51278 * 104.19680 * 142.91560 * 9 7 6 11 11 O 1.21274 * 124.94097 * 163.70930 * 10 9 7 12 12 N 1.34422 * 110.11253 * 343.74825 * 10 9 7 13 13 C 1.46502 * 124.34337 * 179.56995 * 12 10 9 14 14 C 1.53947 * 113.74309 * 36.65217 * 13 12 10 15 15 N 1.47588 * 86.11452 * 222.04352 * 14 13 12 16 16 C 1.36931 * 134.49305 * 204.63861 * 15 14 13 17 17 H 1.07998 * 120.00370 * 180.02562 * 16 15 14 18 18 C 1.38820 * 120.00212 * 359.97438 * 16 15 14 19 19 N 1.31620 * 119.99416 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00264 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47106 * 90.00570 * 20 18 16 22 22 H 1.48502 * 109.47029 * 210.00249 * 20 18 16 23 23 H 1.48497 * 109.47208 * 329.99958 * 20 18 16 24 24 C 1.47576 * 91.01455 * 24.63962 * 15 14 13 25 25 C 1.46759 * 111.30416 * 359.58949 * 12 10 9 26 26 C 1.50702 * 109.46944 * 120.00003 * 2 1 3 27 27 C 1.34520 * 125.78625 * 240.00439 * 26 2 1 28 28 C 1.41381 * 106.83580 * 180.29744 * 27 26 2 29 29 C 1.34513 * 106.84363 * 359.57150 * 28 27 26 30 30 O 1.34302 * 125.79164 * 60.04251 * 26 2 1 31 31 H 1.08996 * 109.46543 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46701 * 300.00072 * 1 2 3 33 33 H 1.08998 * 109.46586 * 60.00194 * 1 2 3 34 34 H 0.97003 * 119.99861 * 359.97438 * 6 4 2 35 35 H 1.09000 * 110.48361 * 261.59455 * 9 7 6 36 36 H 1.09005 * 110.48460 * 24.23479 * 9 7 6 37 37 H 1.09000 * 112.94281 * 168.38215 * 13 12 10 38 38 H 1.08994 * 113.76594 * 336.34043 * 14 13 12 39 39 H 1.09001 * 113.76934 * 107.74594 * 14 13 12 40 40 H 0.97003 * 119.99975 * 179.97438 * 19 18 16 41 41 H 1.09001 * 113.77016 * 221.05550 * 24 15 14 42 42 H 1.08997 * 113.77131 * 89.66042 * 24 15 14 43 43 H 1.09000 * 110.24535 * 258.01530 * 25 12 10 44 44 H 1.09001 * 110.24143 * 136.01859 * 25 12 10 45 45 H 1.08002 * 126.57789 * 0.02807 * 27 26 2 46 46 H 1.08009 * 126.57222 * 179.73218 * 28 27 26 47 47 H 1.07998 * 125.78715 * 180.12081 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6965 -1.1191 6 7 1.7069 -0.2500 -2.4545 7 6 2.1957 -0.9403 -3.6507 8 1 3.2113 -1.3061 -3.4998 9 6 1.2460 -2.0931 -4.0512 10 6 1.2507 -2.0691 -5.5638 11 8 0.8632 -2.9725 -6.2740 12 7 1.7476 -0.9010 -6.0060 13 6 1.9017 -0.5508 -7.4202 14 6 0.7676 -1.0796 -8.3169 15 7 1.8284 -1.4266 -9.2824 16 6 1.8702 -1.6045 -10.6395 17 1 2.8010 -1.8640 -11.1218 18 6 0.7158 -1.4523 -11.3953 19 7 -0.4187 -1.1365 -10.8075 20 14 0.7728 -1.6942 -13.2467 21 1 0.4981 -3.1177 -13.5686 22 1 -0.2529 -0.8344 -13.8901 23 1 2.1184 -1.3229 -13.7532 24 6 2.8262 -1.5050 -8.1979 25 6 2.1163 -0.0218 -4.8902 26 6 2.0324 -0.7104 1.2305 27 6 2.8089 -0.1719 2.1878 28 6 3.0439 -1.1869 3.1436 29 6 2.3892 -2.2821 2.7180 30 8 1.7813 -1.9887 1.5569 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3632 0.5138 -0.8900 34 1 1.1489 0.5385 -2.5435 35 1 1.6266 -3.0460 -3.6836 36 1 0.2414 -1.9098 -3.6698 37 1 2.1299 0.5038 -7.5743 38 1 0.2487 -1.9448 -7.9045 39 1 0.0887 -0.3034 -8.6702 40 1 -1.2254 -1.0298 -11.3356 41 1 3.7911 -1.0685 -8.4562 42 1 2.9120 -2.4952 -7.7505 43 1 1.3535 0.7431 -4.7448 44 1 3.0848 0.4413 -5.0791 45 1 3.1846 0.8402 2.2181 46 1 3.6337 -1.0988 4.0441 47 1 2.3615 -3.2370 3.2218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094783578.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:13 Heat of formation + Delta-G solvation = 19.509284 kcal Electronic energy + Delta-G solvation = -30122.314864 eV Core-core repulsion = 25888.480975 eV Total energy + Delta-G solvation = -4233.833889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.86993 -40.78956 -39.70945 -37.28596 -36.43414 -34.77048 -34.02219 -33.12797 -32.14015 -30.33400 -28.90567 -27.58710 -27.09982 -25.08149 -24.71815 -23.42490 -22.36918 -22.02933 -21.21831 -20.55883 -20.12338 -18.33293 -17.97979 -17.46227 -16.86571 -16.64647 -16.27966 -16.08837 -15.63017 -15.42665 -14.96911 -14.68583 -14.45056 -14.06227 -13.94359 -13.75340 -13.52391 -13.50427 -13.28432 -13.09102 -12.96217 -12.81429 -12.42583 -12.19111 -12.07356 -11.99280 -11.82498 -11.58894 -11.39801 -11.16682 -10.85014 -10.69627 -10.27877 -10.18172 -10.10888 -9.98300 -9.70216 -9.48787 -9.16777 -8.77088 -8.64736 -8.19259 -6.80693 -5.71719 -3.03579 1.42674 2.22707 2.29018 2.62810 2.75161 2.92436 3.29350 3.43087 3.48120 3.49175 4.06478 4.11970 4.33215 4.42372 4.49358 4.52042 4.60927 4.76606 4.79517 4.85209 4.87339 5.10475 5.21259 5.24138 5.34069 5.35824 5.50720 5.54186 5.55212 5.62001 5.64485 5.65457 5.70869 5.80558 5.85596 6.08670 6.19415 6.29787 6.52231 6.58397 6.87357 6.87556 7.05496 7.29760 7.48584 7.59457 7.65088 7.82042 8.02160 8.55164 9.09351 9.75258 10.64484 11.45534 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.037670 B = 0.001824 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.117634 B =15349.336242 C =15396.515262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.028 4.028 3 H 0.127 0.873 4 C 0.518 3.482 5 O -0.519 6.519 6 N -0.718 5.718 7 C 0.136 3.864 8 H 0.110 0.890 9 C -0.167 4.167 10 C 0.515 3.485 11 O -0.506 6.506 12 N -0.606 5.606 13 C 0.098 3.902 14 C 0.152 3.848 15 N -0.605 5.605 16 C -0.220 4.220 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.919 5.919 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.111 3.889 25 C 0.100 3.900 26 C 0.010 3.990 27 C -0.206 4.206 28 C -0.217 4.217 29 C -0.035 4.035 30 O -0.160 6.160 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.404 0.596 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.253 0.747 41 H 0.043 0.957 42 H 0.039 0.961 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.147 0.853 46 H 0.147 0.853 47 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.840 8.047 29.879 31.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.049 4.049 3 H 0.145 0.855 4 C 0.304 3.696 5 O -0.393 6.393 6 N -0.372 5.372 7 C 0.030 3.970 8 H 0.128 0.872 9 C -0.208 4.208 10 C 0.301 3.699 11 O -0.380 6.380 12 N -0.341 5.341 13 C -0.004 4.004 14 C 0.026 3.974 15 N -0.331 5.331 16 C -0.348 4.348 17 H 0.098 0.902 18 C -0.205 4.205 19 N -0.566 5.566 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C -0.016 4.016 25 C -0.025 4.025 26 C -0.041 4.041 27 C -0.225 4.225 28 C -0.236 4.236 29 C -0.103 4.103 30 O -0.054 6.054 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.239 0.761 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.091 0.909 44 H 0.104 0.896 45 H 0.165 0.835 46 H 0.165 0.835 47 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.842 6.657 28.957 29.960 hybrid contribution -0.065 0.302 -0.748 0.809 sum 3.777 6.958 28.209 29.299 Atomic orbital electron populations 1.21842 0.91062 1.03981 1.03588 1.19887 0.98341 0.99255 0.87454 0.85540 1.20402 0.80289 0.84780 0.84170 1.90782 1.36674 1.25379 1.86425 1.45890 1.54091 1.32265 1.04921 1.21810 0.99280 0.92193 0.83692 0.87159 1.22828 1.02057 1.01273 0.94666 1.20602 0.77306 0.82172 0.89799 1.90787 1.46711 1.38582 1.61966 1.48497 1.63060 1.16290 1.06298 1.24093 1.01800 0.99323 0.75219 1.22788 0.91256 0.98519 0.84862 1.45665 1.05288 1.81350 1.00793 1.18992 0.95126 1.40977 0.79677 0.90186 1.24805 0.95334 1.02186 0.98177 1.69831 0.99055 1.53635 1.34120 0.86095 0.77084 0.77610 0.84820 1.21605 1.21646 1.20615 1.22933 0.93554 0.96498 0.88653 1.22184 1.01780 0.93079 0.85470 1.21488 1.02218 0.82937 0.97506 1.21539 1.03505 1.01314 0.96145 1.21783 1.05685 0.93591 1.02584 1.24056 0.98749 1.00814 0.86717 1.84037 1.58987 1.27486 1.34937 0.91216 0.90694 0.90822 0.76081 0.87848 0.87812 0.87638 0.92328 0.91186 0.93671 0.93912 0.94323 0.90851 0.89624 0.83507 0.83498 0.78184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.07 37.16 0.34 -0.35 16 2 C -0.03 -0.18 3.13 -92.92 -0.29 -0.47 16 3 H 0.13 0.41 8.10 -51.93 -0.42 -0.01 16 4 C 0.52 4.67 7.15 -10.99 -0.08 4.59 16 5 O -0.52 -7.13 15.54 -1.33 -0.02 -7.15 16 6 N -0.72 -4.87 5.08 -52.22 -0.27 -5.13 16 7 C 0.14 1.27 3.43 -66.29 -0.23 1.04 16 8 H 0.11 1.15 7.72 -51.93 -0.40 0.75 16 9 C -0.17 -2.02 6.59 -26.74 -0.18 -2.19 16 10 C 0.52 8.75 7.44 -10.86 -0.08 8.67 16 11 O -0.51 -11.39 14.64 5.56 0.08 -11.31 16 12 N -0.61 -9.18 3.15 -166.64 -0.53 -9.71 16 13 C 0.10 1.86 4.82 -70.14 -0.34 1.52 16 14 C 0.15 3.79 6.88 -2.97 -0.02 3.77 16 15 N -0.60 -16.38 3.70 -178.09 -0.66 -17.04 16 16 C -0.22 -6.43 10.70 -15.06 -0.16 -6.60 16 17 H 0.08 2.25 7.83 -52.49 -0.41 1.83 16 18 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 19 N -0.92 -28.21 11.38 55.49 0.63 -27.57 16 20 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.11 2.43 8.45 -2.98 -0.03 2.40 16 25 C 0.10 0.94 7.07 -3.13 -0.02 0.92 16 26 C 0.01 0.09 5.20 -35.62 -0.19 -0.10 16 27 C -0.21 -1.68 10.78 -39.70 -0.43 -2.11 16 28 C -0.22 -1.71 10.91 -39.70 -0.43 -2.15 16 29 C -0.04 -0.29 12.09 29.42 0.36 0.07 16 30 O -0.16 -1.71 10.35 -1.17 -0.01 -1.72 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.20 7.56 -51.93 -0.39 -0.20 16 34 H 0.40 1.44 7.78 -40.82 -0.32 1.13 16 35 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 37 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 38 H 0.06 1.62 5.58 -51.93 -0.29 1.33 16 39 H 0.07 1.88 7.15 -51.93 -0.37 1.51 16 40 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.04 0.90 7.41 -51.93 -0.38 0.52 16 43 H 0.07 0.53 7.77 -51.93 -0.40 0.13 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.15 0.83 8.06 -52.48 -0.42 0.40 16 47 H 0.20 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 390.25 15.07 5.88 5.88 Total: -1.00 -39.73 390.25 -8.53 -48.26 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.75 Total: -0.92 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: -1.87 Total: 8.67 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.82 Total: -59.45 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.05 Total: -20.18 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -39.73 -8.53 -48.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094783578.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.770 kcal (2) G-P(sol) polarization free energy of solvation -39.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds