Wall clock time and date at job start Wed Apr 1 2020 06:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46543 * 2 1 4 4 C 1.50696 * 109.47062 * 239.99959 * 2 1 3 5 5 O 1.21288 * 119.99641 * 239.99888 * 4 2 1 6 6 N 1.34769 * 120.00248 * 60.00147 * 4 2 1 7 7 C 1.46503 * 120.00157 * 179.97438 * 6 4 2 8 8 H 1.08996 * 110.85381 * 322.66284 * 7 6 4 9 9 C 1.54636 * 110.96908 * 86.45432 * 7 6 4 10 10 C 1.51278 * 104.19680 * 142.91560 * 9 7 6 11 11 O 1.21274 * 124.94097 * 163.70930 * 10 9 7 12 12 N 1.34422 * 110.11253 * 343.74825 * 10 9 7 13 13 C 1.46502 * 124.34337 * 179.56995 * 12 10 9 14 14 C 1.53947 * 113.74309 * 36.65217 * 13 12 10 15 15 N 1.47588 * 86.11452 * 222.04352 * 14 13 12 16 16 C 1.36931 * 134.49305 * 204.63861 * 15 14 13 17 17 H 1.07998 * 120.00370 * 180.02562 * 16 15 14 18 18 C 1.38820 * 120.00212 * 359.97438 * 16 15 14 19 19 N 1.31620 * 119.99416 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00264 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47106 * 90.00570 * 20 18 16 22 22 H 1.48502 * 109.47029 * 210.00249 * 20 18 16 23 23 H 1.48497 * 109.47208 * 329.99958 * 20 18 16 24 24 C 1.47576 * 91.01455 * 24.63962 * 15 14 13 25 25 C 1.46759 * 111.30416 * 359.58949 * 12 10 9 26 26 C 1.50702 * 109.46944 * 120.00003 * 2 1 3 27 27 C 1.34520 * 125.78625 * 240.00439 * 26 2 1 28 28 C 1.41381 * 106.83580 * 180.29744 * 27 26 2 29 29 C 1.34513 * 106.84363 * 359.57150 * 28 27 26 30 30 O 1.34302 * 125.79164 * 60.04251 * 26 2 1 31 31 H 1.08996 * 109.46543 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46701 * 300.00072 * 1 2 3 33 33 H 1.08998 * 109.46586 * 60.00194 * 1 2 3 34 34 H 0.97003 * 119.99861 * 359.97438 * 6 4 2 35 35 H 1.09000 * 110.48361 * 261.59455 * 9 7 6 36 36 H 1.09005 * 110.48460 * 24.23479 * 9 7 6 37 37 H 1.09000 * 112.94281 * 168.38215 * 13 12 10 38 38 H 1.08994 * 113.76594 * 336.34043 * 14 13 12 39 39 H 1.09001 * 113.76934 * 107.74594 * 14 13 12 40 40 H 0.97003 * 119.99975 * 179.97438 * 19 18 16 41 41 H 1.09001 * 113.77016 * 221.05550 * 24 15 14 42 42 H 1.08997 * 113.77131 * 89.66042 * 24 15 14 43 43 H 1.09000 * 110.24535 * 258.01530 * 25 12 10 44 44 H 1.09001 * 110.24143 * 136.01859 * 25 12 10 45 45 H 1.08002 * 126.57789 * 0.02807 * 27 26 2 46 46 H 1.08009 * 126.57222 * 179.73218 * 28 27 26 47 47 H 1.07998 * 125.78715 * 180.12081 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6965 -1.1191 6 7 1.7069 -0.2500 -2.4545 7 6 2.1957 -0.9403 -3.6507 8 1 3.2113 -1.3061 -3.4998 9 6 1.2460 -2.0931 -4.0512 10 6 1.2507 -2.0691 -5.5638 11 8 0.8632 -2.9725 -6.2740 12 7 1.7476 -0.9010 -6.0060 13 6 1.9017 -0.5508 -7.4202 14 6 0.7676 -1.0796 -8.3169 15 7 1.8284 -1.4266 -9.2824 16 6 1.8702 -1.6045 -10.6395 17 1 2.8010 -1.8640 -11.1218 18 6 0.7158 -1.4523 -11.3953 19 7 -0.4187 -1.1365 -10.8075 20 14 0.7728 -1.6942 -13.2467 21 1 0.4981 -3.1177 -13.5686 22 1 -0.2529 -0.8344 -13.8901 23 1 2.1184 -1.3229 -13.7532 24 6 2.8262 -1.5050 -8.1979 25 6 2.1163 -0.0218 -4.8902 26 6 2.0324 -0.7104 1.2305 27 6 2.8089 -0.1719 2.1878 28 6 3.0439 -1.1869 3.1436 29 6 2.3892 -2.2821 2.7180 30 8 1.7813 -1.9887 1.5569 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3632 0.5138 -0.8900 34 1 1.1489 0.5385 -2.5435 35 1 1.6266 -3.0460 -3.6836 36 1 0.2414 -1.9098 -3.6698 37 1 2.1299 0.5038 -7.5743 38 1 0.2487 -1.9448 -7.9045 39 1 0.0887 -0.3034 -8.6702 40 1 -1.2254 -1.0298 -11.3356 41 1 3.7911 -1.0685 -8.4562 42 1 2.9120 -2.4952 -7.7505 43 1 1.3535 0.7431 -4.7448 44 1 3.0848 0.4413 -5.0791 45 1 3.1846 0.8402 2.2181 46 1 3.6337 -1.0988 4.0441 47 1 2.3615 -3.2370 3.2218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094783578.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:12 Heat of formation + Delta-G solvation = -9.880069 kcal Electronic energy + Delta-G solvation = -30123.589281 eV Core-core repulsion = 25888.480975 eV Total energy + Delta-G solvation = -4235.108306 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.46311 -41.91969 -40.66619 -38.96844 -37.67097 -35.46414 -35.02173 -34.10678 -33.69904 -31.58827 -29.48976 -29.17172 -28.33030 -26.61586 -25.69559 -25.13913 -23.16797 -22.63129 -22.15964 -21.94867 -20.86495 -19.77872 -18.81624 -18.60625 -18.13484 -17.75644 -17.46162 -17.00819 -16.76825 -16.46387 -16.14988 -16.01559 -15.62579 -15.28469 -15.13215 -14.85878 -14.67106 -14.56034 -14.12510 -14.02942 -13.64661 -13.61743 -13.49926 -13.42469 -13.31014 -13.26101 -12.84907 -12.78670 -12.59455 -12.52359 -12.47842 -12.24831 -12.02226 -11.91356 -11.51812 -11.12689 -10.92726 -10.75476 -10.65371 -10.13224 -9.57946 -9.34674 -8.94580 -7.93155 -5.27797 0.83163 1.42736 1.46458 1.53276 1.55046 1.60491 1.69630 1.88417 2.15138 2.24021 2.48318 3.24913 3.31495 3.47190 3.48472 3.58035 3.72055 3.78350 3.95299 4.01676 4.05483 4.17831 4.25083 4.26738 4.38899 4.52235 4.57297 4.65380 4.75097 4.79822 4.81958 4.85509 4.88788 4.91581 4.99630 5.07013 5.20743 5.21513 5.22808 5.32996 5.39287 5.47783 5.67560 5.84706 5.89467 6.24134 6.29513 6.50599 6.88237 7.20410 7.22630 7.56720 8.52335 9.24056 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.037670 B = 0.001824 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.117634 B =15349.336242 C =15396.515262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.022 4.022 3 H 0.165 0.835 4 C 0.519 3.481 5 O -0.571 6.571 6 N -0.698 5.698 7 C 0.151 3.849 8 H 0.103 0.897 9 C -0.154 4.154 10 C 0.504 3.496 11 O -0.574 6.574 12 N -0.604 5.604 13 C 0.138 3.862 14 C 0.146 3.854 15 N -0.635 5.635 16 C -0.238 4.238 17 H 0.085 0.915 18 C -0.069 4.069 19 N -0.954 5.954 20 Si 0.985 3.015 21 H -0.292 1.292 22 H -0.289 1.289 23 H -0.262 1.262 24 C 0.110 3.890 25 C 0.101 3.899 26 C -0.013 4.013 27 C -0.214 4.214 28 C -0.227 4.227 29 C -0.053 4.053 30 O -0.189 6.189 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.424 0.576 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.141 0.859 38 H 0.024 0.976 39 H 0.043 0.957 40 H 0.249 0.751 41 H 0.070 0.930 42 H 0.019 0.981 43 H 0.110 0.890 44 H 0.114 0.886 45 H 0.170 0.830 46 H 0.166 0.834 47 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.007 11.047 31.300 33.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.043 4.043 3 H 0.182 0.818 4 C 0.306 3.694 5 O -0.449 6.449 6 N -0.352 5.352 7 C 0.045 3.955 8 H 0.121 0.879 9 C -0.196 4.196 10 C 0.292 3.708 11 O -0.453 6.453 12 N -0.338 5.338 13 C 0.034 3.966 14 C 0.020 3.980 15 N -0.362 5.362 16 C -0.366 4.366 17 H 0.103 0.897 18 C -0.262 4.262 19 N -0.602 5.602 20 Si 0.812 3.188 21 H -0.219 1.219 22 H -0.215 1.215 23 H -0.187 1.187 24 C -0.016 4.016 25 C -0.021 4.021 26 C -0.064 4.064 27 C -0.233 4.233 28 C -0.246 4.246 29 C -0.121 4.121 30 O -0.085 6.085 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.264 0.736 35 H 0.110 0.890 36 H 0.138 0.862 37 H 0.159 0.841 38 H 0.042 0.958 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.037 0.963 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.187 0.813 46 H 0.184 0.816 47 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 5.034 9.737 30.441 32.354 hybrid contribution -0.405 -0.687 -1.076 1.339 sum 4.629 9.050 29.365 31.075 Atomic orbital electron populations 1.21863 0.89817 1.03021 1.05452 1.20065 0.99195 1.00212 0.84817 0.81772 1.20930 0.79244 0.84047 0.85227 1.90772 1.39172 1.27795 1.87164 1.45652 1.53702 1.32380 1.03479 1.21531 0.98085 0.91235 0.84697 0.87913 1.22745 1.03810 1.02328 0.90707 1.21453 0.76065 0.81667 0.91618 1.90753 1.49520 1.40999 1.63991 1.48442 1.62197 1.16853 1.06259 1.23401 0.96610 0.99953 0.76624 1.22593 0.92245 0.96770 0.86364 1.46108 1.07409 1.81515 1.01131 1.19442 0.95490 1.40351 0.81350 0.89694 1.25739 0.94995 1.02424 1.03054 1.70040 0.99539 1.54958 1.35667 0.84991 0.77786 0.77000 0.78999 1.21901 1.21509 1.18666 1.23027 0.94430 0.96531 0.87628 1.22548 1.04496 0.92397 0.82702 1.22108 1.02828 0.82638 0.98778 1.21933 1.03050 1.02390 0.95902 1.22158 1.05674 0.93507 1.03296 1.24680 0.98761 1.02203 0.86415 1.84019 1.59862 1.28704 1.35961 0.93577 0.89576 0.88228 0.73605 0.88951 0.86179 0.84117 0.95834 0.93830 0.94207 0.91219 0.96293 0.87185 0.86774 0.81279 0.81619 0.75932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.07 71.98 0.65 -0.29 16 2 C -0.02 -0.21 3.13 -12.28 -0.04 -0.25 16 3 H 0.16 0.30 8.10 -2.39 -0.02 0.28 16 4 C 0.52 8.13 7.15 87.66 0.63 8.75 16 5 O -0.57 -15.30 15.54 3.52 0.05 -15.25 16 6 N -0.70 -6.88 5.08 -437.53 -2.22 -9.10 16 7 C 0.15 2.38 3.43 46.05 0.16 2.54 16 8 H 0.10 1.91 7.72 -2.39 -0.02 1.89 16 9 C -0.15 -3.60 6.59 30.59 0.20 -3.39 16 10 C 0.50 17.24 7.44 87.90 0.65 17.90 16 11 O -0.57 -27.32 14.64 -3.01 -0.04 -27.36 16 12 N -0.60 -17.22 3.15 -799.72 -2.52 -19.74 16 13 C 0.14 5.03 4.82 46.75 0.23 5.26 16 14 C 0.15 7.55 6.88 86.48 0.60 8.15 16 15 N -0.64 -35.06 3.70 -717.34 -2.65 -37.71 16 16 C -0.24 -14.14 10.70 84.04 0.90 -13.24 16 17 H 0.09 4.79 7.83 -2.91 -0.02 4.76 16 18 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 19 N -0.95 -60.36 11.38 21.65 0.25 -60.11 16 20 Si 0.98 47.48 29.55 68.60 2.03 49.51 16 21 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 24 C 0.11 4.79 8.45 86.48 0.73 5.52 16 25 C 0.10 1.46 7.07 86.83 0.61 2.07 16 26 C -0.01 -0.22 5.20 24.83 0.13 -0.09 16 27 C -0.21 -3.11 10.78 22.19 0.24 -2.87 16 28 C -0.23 -3.33 10.91 22.19 0.24 -3.09 16 29 C -0.05 -0.86 12.09 66.97 0.81 -0.05 16 30 O -0.19 -4.06 10.35 4.11 0.04 -4.02 16 31 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.10 0.11 7.56 -2.39 -0.02 0.09 16 34 H 0.42 0.81 7.78 -92.71 -0.72 0.09 16 35 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.12 2.41 8.08 -2.38 -0.02 2.39 16 37 H 0.14 4.24 8.14 -2.39 -0.02 4.22 16 38 H 0.02 1.40 5.58 -2.39 -0.01 1.38 16 39 H 0.04 2.44 7.15 -2.39 -0.02 2.42 16 40 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 41 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.02 0.92 7.41 -2.39 -0.02 0.90 16 43 H 0.11 0.92 7.77 -2.39 -0.02 0.91 16 44 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 46 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 47 H 0.22 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -94.52 390.25 2.41 -92.11 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 0.28 Total: 8.44 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 7.21 Total: 23.24 kcal Atomic # 7 Polarization: -119.52 SS G_CDS: -7.15 Total: -126.66 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: 0.05 Total: -46.63 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -94.52 2.41 -92.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094783578.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.230 kcal (2) G-P(sol) polarization free energy of solvation -94.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds