Wall clock time and date at job start Wed Apr 1 2020 05:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.78714 * 2 1 4 4 C 1.52789 * 109.55456 * 239.77162 * 2 1 3 5 5 N 1.46892 * 109.42332 * 186.60792 * 4 2 1 6 6 C 1.46901 * 111.26849 * 62.96621 * 5 4 2 7 7 C 1.53234 * 109.34044 * 296.89260 * 6 5 4 8 8 N 1.47073 * 109.63212 * 120.48932 * 2 1 3 9 9 C 1.34782 * 120.88123 * 350.88860 * 8 2 1 10 10 O 1.21346 * 119.99631 * 7.96645 * 9 8 2 11 11 C 1.49448 * 120.00123 * 187.96143 * 9 8 2 12 12 O 1.21354 * 119.99991 * 6.50382 * 11 9 8 13 13 N 1.34771 * 120.00151 * 186.50552 * 11 9 8 14 14 C 1.46504 * 120.00502 * 179.97438 * 13 11 9 15 15 C 1.50694 * 109.47429 * 179.97438 * 14 13 11 16 16 C 1.38303 * 119.93493 * 269.72889 * 15 14 13 17 17 C 1.38095 * 120.07040 * 179.72333 * 16 15 14 18 18 C 1.38884 * 119.93025 * 0.56962 * 17 16 15 19 19 O 1.35744 * 120.07053 * 179.67826 * 18 17 16 20 20 C 1.34828 * 117.00212 * 173.13101 * 19 18 17 21 21 H 1.07998 * 119.99767 * 5.19729 * 20 19 18 22 22 C 1.38658 * 120.00288 * 185.19999 * 20 19 18 23 23 N 1.31561 * 119.99834 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00188 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46983 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47103 * 119.99878 * 24 22 20 27 27 H 1.48492 * 109.47176 * 240.00172 * 24 22 20 28 28 C 1.38876 * 119.85862 * 359.70614 * 18 17 16 29 29 C 1.38099 * 119.93476 * 359.97438 * 28 18 17 30 30 H 1.09005 * 109.47082 * 305.63739 * 1 2 3 31 31 H 1.08997 * 109.47147 * 65.63490 * 1 2 3 32 32 H 1.09003 * 109.47425 * 185.63891 * 1 2 3 33 33 H 1.09001 * 109.56521 * 66.55231 * 4 2 1 34 34 H 1.09003 * 109.33671 * 306.52892 * 4 2 1 35 35 H 1.00906 * 111.00131 * 298.81695 * 5 4 2 36 36 H 1.09010 * 109.49191 * 176.93404 * 6 5 4 37 37 H 1.09001 * 109.51316 * 56.87196 * 6 5 4 38 38 H 1.08999 * 109.62958 * 294.12209 * 7 6 5 39 39 H 1.09003 * 109.79129 * 173.63528 * 7 6 5 40 40 H 0.96999 * 119.99844 * 359.72520 * 13 11 9 41 41 H 1.08998 * 109.46674 * 300.00443 * 14 13 11 42 42 H 1.09004 * 109.46577 * 60.00155 * 14 13 11 43 43 H 1.07999 * 119.95839 * 359.97438 * 16 15 14 44 44 H 1.07997 * 120.03524 * 180.27184 * 17 16 15 45 45 H 0.96996 * 119.99948 * 179.97438 * 23 22 20 46 46 H 1.08008 * 120.03330 * 180.02562 * 28 18 17 47 47 H 1.07998 * 119.96640 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0414 -0.7248 -1.2440 5 7 3.5016 -0.8624 -1.1635 6 6 3.8964 -1.6901 -0.0159 7 6 3.4620 -0.9995 1.2812 8 7 2.0241 -0.7028 1.1937 9 6 1.1808 -1.0703 2.1788 10 8 -0.0174 -0.9537 2.0265 11 6 1.7214 -1.6214 3.4584 12 8 2.9183 -1.6288 3.6582 13 7 0.8796 -2.1102 4.3905 14 6 1.4095 -2.6510 5.6448 15 6 0.2697 -3.1281 6.5074 16 6 -0.3245 -2.2618 7.4070 17 6 -1.3730 -2.6944 8.1948 18 6 -1.8228 -4.0043 8.0916 19 8 -2.8489 -4.4344 8.8693 20 6 -3.3296 -5.6693 8.6206 21 1 -2.8457 -6.3000 7.8896 22 6 -4.4453 -6.1295 9.3033 23 7 -5.0351 -5.3609 10.1934 24 14 -5.1117 -7.8400 8.9582 25 1 -4.2762 -8.4968 7.9210 26 1 -5.0774 -8.6455 10.2053 27 1 -6.5115 -7.7374 8.4735 28 6 -1.2202 -4.8733 7.1914 29 6 -0.1765 -4.4328 6.4016 30 1 -0.3633 0.5988 0.8352 31 1 -0.3633 0.4240 -0.9361 32 1 -0.3634 -1.0227 0.1010 33 1 1.7784 -0.1527 -2.1338 34 1 1.5853 -1.7133 -1.2988 35 1 3.9486 0.0415 -1.1282 36 1 4.9789 -1.8181 -0.0149 37 1 3.4149 -2.6654 -0.0876 38 1 4.0203 -0.0718 1.4068 39 1 3.6493 -1.6572 2.1301 40 1 -0.0774 -2.1007 4.2325 41 1 2.0756 -3.4859 5.4276 42 1 1.9620 -1.8727 6.1712 43 1 0.0292 -1.2448 7.4904 44 1 -1.8394 -2.0162 8.8939 45 1 -5.8158 -5.6827 10.6707 46 1 -1.5680 -5.8925 7.1085 47 1 0.2927 -5.1083 5.7017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118042039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:32 Heat of formation + Delta-G solvation = -35.358735 kcal Electronic energy + Delta-G solvation = -29758.216290 eV Core-core repulsion = 25522.003146 eV Total energy + Delta-G solvation = -4236.213144 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.37203 -39.53583 -39.00411 -38.04327 -36.98115 -34.90808 -33.79541 -33.10536 -32.40863 -30.36723 -30.15004 -28.46398 -26.44577 -25.75607 -25.22085 -23.91019 -22.74349 -22.11368 -21.64683 -20.75879 -20.02026 -18.14820 -18.00576 -17.12895 -17.03530 -16.47520 -16.07281 -15.79203 -15.65258 -15.13442 -15.06631 -14.72639 -14.60976 -14.50881 -14.06605 -13.84213 -13.75430 -13.53766 -13.41780 -12.95887 -12.91954 -12.86715 -12.82448 -12.29130 -12.15432 -11.93674 -11.75024 -11.73034 -11.43867 -11.43097 -11.01668 -10.87107 -10.74968 -10.72528 -10.49995 -9.85080 -9.47628 -9.30543 -9.12877 -8.94129 -8.46256 -8.33634 -7.38458 -6.56243 -4.15028 1.23570 1.83158 2.08657 2.27215 3.00661 3.05736 3.07998 3.13616 3.32042 3.77618 3.87838 4.18499 4.36205 4.48219 4.56970 4.67484 4.71072 4.75491 4.97239 5.01644 5.06803 5.14182 5.15712 5.29316 5.41573 5.44467 5.51195 5.56495 5.59349 5.71275 5.74871 5.77279 5.86156 6.07562 6.20873 6.25776 6.28828 6.45997 6.54243 6.71781 6.75182 6.85626 6.90475 7.06804 7.16126 7.21296 7.30998 7.57459 7.66172 7.85250 7.88384 8.89037 9.56478 10.61157 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019327 B = 0.001891 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.424088 B =14803.592558 C =15239.334266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.102 3.898 3 H 0.074 0.926 4 C 0.047 3.953 5 N -0.687 5.687 6 C 0.042 3.958 7 C 0.035 3.965 8 N -0.584 5.584 9 C 0.509 3.491 10 O -0.509 6.509 11 C 0.501 3.499 12 O -0.524 6.524 13 N -0.684 5.684 14 C 0.177 3.823 15 C -0.221 4.221 16 C -0.052 4.052 17 C -0.195 4.195 18 C 0.162 3.838 19 O -0.172 6.172 20 C -0.393 4.393 21 H 0.094 0.906 22 C 0.040 3.960 23 N -0.858 5.858 24 Si 0.943 3.057 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.275 1.275 28 C -0.237 4.237 29 C -0.048 4.048 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.342 0.658 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.145 0.855 40 H 0.415 0.585 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.113 0.887 44 H 0.119 0.881 45 H 0.271 0.729 46 H 0.129 0.871 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.395 8.829 -19.352 26.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.002 4.002 3 H 0.092 0.908 4 C -0.083 4.083 5 N -0.315 5.315 6 C -0.089 4.089 7 C -0.088 4.088 8 N -0.319 5.319 9 C 0.292 3.708 10 O -0.385 6.385 11 C 0.282 3.718 12 O -0.403 6.403 13 N -0.336 5.336 14 C 0.056 3.944 15 C -0.222 4.222 16 C -0.071 4.071 17 C -0.214 4.214 18 C 0.107 3.893 19 O -0.074 6.074 20 C -0.469 4.469 21 H 0.112 0.888 22 C -0.165 4.165 23 N -0.492 5.492 24 Si 0.767 3.233 25 H -0.190 1.190 26 H -0.200 1.200 27 H -0.200 1.200 28 C -0.256 4.256 29 C -0.067 4.067 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.160 0.840 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.162 0.838 40 H 0.251 0.749 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.131 0.869 44 H 0.137 0.863 45 H 0.081 0.919 46 H 0.147 0.853 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 15.282 8.419 -19.366 26.067 hybrid contribution -0.894 -0.162 0.531 1.052 sum 14.388 8.258 -18.835 25.099 Atomic orbital electron populations 1.22173 0.91757 1.04433 1.01260 1.22121 0.97243 0.95473 0.85384 0.90799 1.22451 0.88066 1.01635 0.96169 1.60585 1.07484 1.20222 1.43191 1.22480 1.01621 0.97380 0.87374 1.23528 0.79134 1.03112 1.03019 1.47986 1.08915 1.56507 1.18515 1.20230 0.86451 0.79416 0.84731 1.90839 1.14778 1.52828 1.80007 1.20236 0.86781 0.79519 0.85279 1.90494 1.14755 1.56792 1.78299 1.46303 1.11440 1.58577 1.17242 1.20163 0.94314 0.98177 0.81795 1.19121 1.03339 0.95502 1.04272 1.20527 0.94286 0.97947 0.94311 1.20222 1.01560 0.94289 1.05334 1.19447 0.88388 0.92414 0.89023 1.83974 1.41170 1.33418 1.48850 1.21416 1.11797 0.89097 1.24602 0.88818 1.25340 0.95415 1.00111 0.95649 1.70045 1.19872 1.36395 1.22870 0.85614 0.79034 0.79958 0.78649 1.19016 1.20040 1.20026 1.21160 1.01064 1.01238 1.02138 1.20634 0.94914 0.94368 0.96769 0.90948 0.93148 0.90578 0.89209 0.90190 0.84035 0.89096 0.90414 0.91390 0.83826 0.74852 0.90832 0.90847 0.86908 0.86277 0.91873 0.85335 0.87336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 7.60 37.16 0.28 -0.99 16 2 C 0.10 0.82 3.61 -67.73 -0.24 0.58 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.05 0.32 5.97 -3.94 -0.02 0.30 16 5 N -0.69 -4.55 6.85 -113.77 -0.78 -5.33 16 6 C 0.04 0.29 6.70 -3.70 -0.02 0.26 16 7 C 0.04 0.29 6.08 -3.60 -0.02 0.27 16 8 N -0.58 -5.69 3.02 -165.70 -0.50 -6.19 16 9 C 0.51 6.11 7.66 -11.58 -0.09 6.03 16 10 O -0.51 -6.92 12.00 5.50 0.07 -6.85 16 11 C 0.50 6.26 7.74 -11.59 -0.09 6.17 16 12 O -0.52 -6.99 13.20 5.49 0.07 -6.92 16 13 N -0.68 -8.56 5.54 -61.91 -0.34 -8.90 16 14 C 0.18 2.27 5.80 -5.19 -0.03 2.24 16 15 C -0.22 -3.42 5.25 -104.58 -0.55 -3.96 16 16 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 17 C -0.19 -3.88 9.99 -39.39 -0.39 -4.27 16 18 C 0.16 3.73 6.64 -39.11 -0.26 3.47 16 19 O -0.17 -4.73 9.76 0.07 0.00 -4.73 16 20 C -0.39 -10.62 9.49 30.89 0.29 -10.33 16 21 H 0.09 2.33 5.21 -52.49 -0.27 2.06 16 22 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 23 N -0.86 -24.51 13.67 55.48 0.76 -23.75 16 24 Si 0.94 19.95 29.55 -169.99 -5.02 14.93 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 26 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 27 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 28 C -0.24 -4.83 9.16 -39.40 -0.36 -5.19 16 29 C -0.05 -0.81 9.69 -39.61 -0.38 -1.19 16 30 H 0.07 0.80 6.85 -51.93 -0.36 0.44 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.84 6.71 -51.93 -0.35 0.49 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.34 1.81 8.84 -39.29 -0.35 1.46 16 36 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.14 1.44 4.45 -54.17 -0.24 1.20 16 40 H 0.41 5.29 7.95 -40.82 -0.32 4.97 16 41 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 42 H 0.07 0.91 8.08 -51.93 -0.42 0.50 16 43 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 45 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.13 2.65 5.66 -52.48 -0.30 2.35 16 47 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 382.81 15.07 5.77 5.77 Total: -1.00 -30.17 382.81 -8.74 -38.92 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -6.39 Total: 9.94 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -2.38 Total: -6.88 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: -0.86 Total: -44.19 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.14 Total: -18.49 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.17 -8.74 -38.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118042039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.559 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds