Wall clock time and date at job start Wed Apr 1 2020 05:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.78714 * 2 1 4 4 C 1.52789 * 109.55456 * 239.77162 * 2 1 3 5 5 N 1.46892 * 109.42332 * 186.60792 * 4 2 1 6 6 C 1.46901 * 111.26849 * 62.96621 * 5 4 2 7 7 C 1.53234 * 109.34044 * 296.89260 * 6 5 4 8 8 N 1.47073 * 109.63212 * 120.48932 * 2 1 3 9 9 C 1.34782 * 120.88123 * 350.88860 * 8 2 1 10 10 O 1.21346 * 119.99631 * 7.96645 * 9 8 2 11 11 C 1.49448 * 120.00123 * 187.96143 * 9 8 2 12 12 O 1.21354 * 119.99991 * 6.50382 * 11 9 8 13 13 N 1.34771 * 120.00151 * 186.50552 * 11 9 8 14 14 C 1.46504 * 120.00502 * 179.97438 * 13 11 9 15 15 C 1.50694 * 109.47429 * 179.97438 * 14 13 11 16 16 C 1.38303 * 119.93493 * 269.72889 * 15 14 13 17 17 C 1.38095 * 120.07040 * 179.72333 * 16 15 14 18 18 C 1.38884 * 119.93025 * 0.56962 * 17 16 15 19 19 O 1.35744 * 120.07053 * 179.67826 * 18 17 16 20 20 C 1.34828 * 117.00212 * 173.13101 * 19 18 17 21 21 H 1.07998 * 119.99767 * 5.19729 * 20 19 18 22 22 C 1.38658 * 120.00288 * 185.19999 * 20 19 18 23 23 N 1.31561 * 119.99834 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00188 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46983 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47103 * 119.99878 * 24 22 20 27 27 H 1.48492 * 109.47176 * 240.00172 * 24 22 20 28 28 C 1.38876 * 119.85862 * 359.70614 * 18 17 16 29 29 C 1.38099 * 119.93476 * 359.97438 * 28 18 17 30 30 H 1.09005 * 109.47082 * 305.63739 * 1 2 3 31 31 H 1.08997 * 109.47147 * 65.63490 * 1 2 3 32 32 H 1.09003 * 109.47425 * 185.63891 * 1 2 3 33 33 H 1.09001 * 109.56521 * 66.55231 * 4 2 1 34 34 H 1.09003 * 109.33671 * 306.52892 * 4 2 1 35 35 H 1.00906 * 111.00131 * 298.81695 * 5 4 2 36 36 H 1.09010 * 109.49191 * 176.93404 * 6 5 4 37 37 H 1.09001 * 109.51316 * 56.87196 * 6 5 4 38 38 H 1.08999 * 109.62958 * 294.12209 * 7 6 5 39 39 H 1.09003 * 109.79129 * 173.63528 * 7 6 5 40 40 H 0.96999 * 119.99844 * 359.72520 * 13 11 9 41 41 H 1.08998 * 109.46674 * 300.00443 * 14 13 11 42 42 H 1.09004 * 109.46577 * 60.00155 * 14 13 11 43 43 H 1.07999 * 119.95839 * 359.97438 * 16 15 14 44 44 H 1.07997 * 120.03524 * 180.27184 * 17 16 15 45 45 H 0.96996 * 119.99948 * 179.97438 * 23 22 20 46 46 H 1.08008 * 120.03330 * 180.02562 * 28 18 17 47 47 H 1.07998 * 119.96640 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0414 -0.7248 -1.2440 5 7 3.5016 -0.8624 -1.1635 6 6 3.8964 -1.6901 -0.0159 7 6 3.4620 -0.9995 1.2812 8 7 2.0241 -0.7028 1.1937 9 6 1.1808 -1.0703 2.1788 10 8 -0.0174 -0.9537 2.0265 11 6 1.7214 -1.6214 3.4584 12 8 2.9183 -1.6288 3.6582 13 7 0.8796 -2.1102 4.3905 14 6 1.4095 -2.6510 5.6448 15 6 0.2697 -3.1281 6.5074 16 6 -0.3245 -2.2618 7.4070 17 6 -1.3730 -2.6944 8.1948 18 6 -1.8228 -4.0043 8.0916 19 8 -2.8489 -4.4344 8.8693 20 6 -3.3296 -5.6693 8.6206 21 1 -2.8457 -6.3000 7.8896 22 6 -4.4453 -6.1295 9.3033 23 7 -5.0351 -5.3609 10.1934 24 14 -5.1117 -7.8400 8.9582 25 1 -4.2762 -8.4968 7.9210 26 1 -5.0774 -8.6455 10.2053 27 1 -6.5115 -7.7374 8.4735 28 6 -1.2202 -4.8733 7.1914 29 6 -0.1765 -4.4328 6.4016 30 1 -0.3633 0.5988 0.8352 31 1 -0.3633 0.4240 -0.9361 32 1 -0.3634 -1.0227 0.1010 33 1 1.7784 -0.1527 -2.1338 34 1 1.5853 -1.7133 -1.2988 35 1 3.9486 0.0415 -1.1282 36 1 4.9789 -1.8181 -0.0149 37 1 3.4149 -2.6654 -0.0876 38 1 4.0203 -0.0718 1.4068 39 1 3.6493 -1.6572 2.1301 40 1 -0.0774 -2.1007 4.2325 41 1 2.0756 -3.4859 5.4276 42 1 1.9620 -1.8727 6.1712 43 1 0.0292 -1.2448 7.4904 44 1 -1.8394 -2.0162 8.8939 45 1 -5.8158 -5.6827 10.6707 46 1 -1.5680 -5.8925 7.1085 47 1 0.2927 -5.1083 5.7017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118042039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:31 Heat of formation + Delta-G solvation = -58.015389 kcal Electronic energy + Delta-G solvation = -29759.198756 eV Core-core repulsion = 25522.003146 eV Total energy + Delta-G solvation = -4237.195611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.24157 -40.91432 -40.18005 -38.85251 -38.54457 -36.01649 -34.58480 -34.27527 -33.79010 -31.88115 -31.55430 -29.19072 -27.87327 -26.97048 -26.31843 -24.89461 -23.68030 -23.41225 -22.49795 -22.11731 -20.95770 -19.89884 -19.03882 -18.70425 -17.97402 -17.35524 -16.92280 -16.72300 -16.58428 -16.36119 -16.25195 -15.90015 -15.65719 -15.59831 -15.56315 -15.26610 -14.97333 -14.53017 -14.44537 -14.36236 -14.18409 -13.71583 -13.69934 -13.59493 -13.35871 -13.09853 -12.93670 -12.59688 -12.51297 -12.38138 -12.34168 -12.28377 -12.10674 -12.05674 -11.58793 -11.22683 -10.84742 -10.59608 -10.31133 -9.99844 -9.83656 -9.12545 -9.01640 -8.50183 -6.18468 0.28901 0.46155 0.55565 1.27947 1.34798 1.43207 1.52778 2.06253 2.15520 2.37954 2.81603 3.11703 3.24389 3.32919 3.46600 3.74759 3.80331 3.94073 3.99682 4.05346 4.07782 4.14465 4.16704 4.40507 4.41664 4.53067 4.55068 4.64636 4.77347 4.79447 4.81837 4.89068 4.99162 5.01014 5.06519 5.12039 5.13711 5.23583 5.28541 5.48613 5.48950 5.66872 5.70211 5.89047 5.91184 5.99640 6.12479 6.18502 6.41205 6.64369 6.88766 6.94625 7.73568 8.72777 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019327 B = 0.001891 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.424088 B =14803.592558 C =15239.334266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.101 3.899 3 H 0.090 0.910 4 C 0.054 3.946 5 N -0.687 5.687 6 C 0.048 3.952 7 C 0.037 3.963 8 N -0.580 5.580 9 C 0.504 3.496 10 O -0.532 6.532 11 C 0.504 3.496 12 O -0.530 6.530 13 N -0.685 5.685 14 C 0.182 3.818 15 C -0.188 4.188 16 C -0.043 4.043 17 C -0.206 4.206 18 C 0.123 3.877 19 O -0.229 6.229 20 C -0.413 4.413 21 H 0.104 0.896 22 C -0.023 4.023 23 N -0.918 5.918 24 Si 1.019 2.981 25 H -0.251 1.251 26 H -0.268 1.268 27 H -0.269 1.269 28 C -0.245 4.245 29 C -0.044 4.044 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.110 0.890 34 H 0.065 0.935 35 H 0.353 0.647 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.130 0.870 40 H 0.414 0.586 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.149 0.851 44 H 0.115 0.885 45 H 0.273 0.727 46 H 0.121 0.879 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.376 9.370 -22.414 30.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.003 4.003 3 H 0.108 0.892 4 C -0.076 4.076 5 N -0.316 5.316 6 C -0.082 4.082 7 C -0.086 4.086 8 N -0.314 5.314 9 C 0.286 3.714 10 O -0.410 6.410 11 C 0.286 3.714 12 O -0.410 6.410 13 N -0.336 5.336 14 C 0.061 3.939 15 C -0.189 4.189 16 C -0.061 4.061 17 C -0.225 4.225 18 C 0.072 3.928 19 O -0.135 6.135 20 C -0.489 4.489 21 H 0.121 0.879 22 C -0.221 4.221 23 N -0.556 5.556 24 Si 0.838 3.162 25 H -0.174 1.174 26 H -0.193 1.193 27 H -0.195 1.195 28 C -0.264 4.264 29 C -0.062 4.062 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.128 0.872 34 H 0.084 0.916 35 H 0.172 0.828 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.147 0.853 40 H 0.251 0.749 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.166 0.834 44 H 0.133 0.867 45 H 0.082 0.918 46 H 0.138 0.862 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 18.351 8.994 -22.485 30.385 hybrid contribution -1.460 -0.079 1.242 1.919 sum 16.890 8.916 -21.243 28.567 Atomic orbital electron populations 1.22036 0.92664 1.02753 1.01498 1.22298 0.96491 0.96313 0.85195 0.89186 1.22412 0.88090 1.00993 0.96152 1.60581 1.07299 1.20931 1.42810 1.22442 1.02536 0.96632 0.86631 1.23555 0.78260 1.03474 1.03284 1.48145 1.09387 1.55538 1.18331 1.20196 0.86403 0.79715 0.85046 1.90849 1.15606 1.54083 1.80426 1.20303 0.86550 0.79211 0.85376 1.90516 1.14942 1.56993 1.78518 1.46148 1.11451 1.58865 1.17155 1.20144 0.92974 0.99228 0.81568 1.19482 1.02261 0.94538 1.02616 1.20912 0.92602 0.99701 0.92907 1.20467 1.02666 0.93326 1.06088 1.20013 0.88422 0.94139 0.90198 1.83945 1.43810 1.34077 1.51655 1.21874 1.12389 0.89562 1.25053 0.87877 1.26603 0.95500 1.04657 0.95306 1.70185 1.21200 1.39013 1.25221 0.84524 0.78355 0.74371 0.78948 1.17379 1.19340 1.19455 1.21258 1.02076 1.00710 1.02365 1.20974 0.93546 0.95556 0.96157 0.93039 0.90955 0.92747 0.87182 0.91599 0.82812 0.87306 0.91622 0.90199 0.85266 0.74925 0.89415 0.89446 0.83359 0.86688 0.91782 0.86165 0.84028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 7.60 71.98 0.55 -1.70 16 2 C 0.10 1.39 3.61 44.81 0.16 1.55 16 3 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 4 C 0.05 0.59 5.97 86.23 0.51 1.11 16 5 N -0.69 -7.02 6.85 -513.84 -3.52 -10.54 16 6 C 0.05 0.53 6.70 86.38 0.58 1.11 16 7 C 0.04 0.52 6.08 86.35 0.53 1.04 16 8 N -0.58 -10.14 3.02 -796.51 -2.40 -12.54 16 9 C 0.50 11.34 7.66 87.27 0.67 12.01 16 10 O -0.53 -14.06 12.00 -3.23 -0.04 -14.10 16 11 C 0.50 11.42 7.74 87.27 0.68 12.09 16 12 O -0.53 -12.67 13.20 -3.26 -0.04 -12.71 16 13 N -0.68 -15.18 5.54 -468.15 -2.59 -17.77 16 14 C 0.18 3.97 5.80 85.63 0.50 4.46 16 15 C -0.19 -5.23 5.25 -19.84 -0.10 -5.34 16 16 C -0.04 -1.31 9.69 22.25 0.22 -1.10 16 17 C -0.21 -8.31 9.99 22.39 0.22 -8.09 16 18 C 0.12 5.90 6.64 22.58 0.15 6.05 16 19 O -0.23 -13.45 9.76 -22.66 -0.22 -13.68 16 20 C -0.41 -23.54 9.49 67.92 0.64 -22.89 16 21 H 0.10 5.37 5.21 -2.91 -0.02 5.36 16 22 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 23 N -0.92 -55.70 13.67 21.61 0.30 -55.41 16 24 Si 1.02 42.23 29.55 68.60 2.03 44.26 16 25 H -0.25 -9.55 7.11 99.48 0.71 -8.85 16 26 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 27 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 28 C -0.24 -10.07 9.16 22.39 0.21 -9.87 16 29 C -0.04 -1.38 9.69 22.25 0.22 -1.16 16 30 H 0.05 1.10 6.85 -2.38 -0.02 1.08 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 32 H 0.05 1.17 6.71 -2.39 -0.02 1.15 16 33 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.35 2.47 8.84 -89.69 -0.79 1.68 16 36 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.13 2.29 4.45 -37.93 -0.17 2.12 16 40 H 0.41 9.61 7.95 -92.71 -0.74 8.88 16 41 H 0.09 1.77 8.08 -2.39 -0.02 1.75 16 42 H 0.09 1.77 8.08 -2.39 -0.02 1.75 16 43 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 44 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 45 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 46 H 0.12 5.07 5.66 -2.91 -0.02 5.06 16 47 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -70.91 382.81 -0.97 -71.88 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: -0.66 Total: 32.14 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 6.19 Total: -11.53 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -8.22 Total: -96.26 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -0.30 Total: -40.49 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -70.91 -0.97 -71.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118042039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.865 kcal (2) G-P(sol) polarization free energy of solvation -70.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds