Wall clock time and date at job start Wed Apr 1 2020 05:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35952 * 116.99827 * 2 1 4 4 C 1.38749 * 119.97942 * 180.02562 * 3 2 1 5 5 C 1.38060 * 120.01844 * 179.97438 * 4 3 2 6 6 C 1.38919 * 119.98058 * 0.02562 * 5 4 3 7 7 N 1.39873 * 120.01675 * 179.97438 * 6 5 4 8 8 C 1.34775 * 120.00180 * 35.10460 * 7 6 5 9 9 O 1.21385 * 119.99805 * 355.39424 * 8 7 6 10 10 C 1.49332 * 119.99818 * 175.40188 * 8 7 6 11 11 O 1.21368 * 119.99917 * 359.97438 * 10 8 7 12 12 N 1.34775 * 120.00243 * 180.02562 * 10 8 7 13 13 C 1.46494 * 120.00418 * 179.97438 * 12 10 8 14 14 H 1.09004 * 110.64085 * 36.68693 * 13 12 10 15 15 C 1.54324 * 110.72275 * 273.54803 * 13 12 10 16 16 N 1.47025 * 107.27193 * 219.44204 * 15 13 12 17 17 C 1.36935 * 125.64685 * 178.97248 * 16 15 13 18 18 H 1.07999 * 119.99833 * 185.01437 * 17 16 15 19 19 C 1.38811 * 120.00275 * 5.01466 * 17 16 15 20 20 N 1.31623 * 120.00022 * 354.93498 * 19 17 16 21 21 Si 1.86794 * 120.00152 * 174.93078 * 19 17 16 22 22 H 1.48505 * 109.46962 * 95.00376 * 21 19 17 23 23 H 1.48499 * 109.47452 * 215.00365 * 21 19 17 24 24 H 1.48506 * 109.47550 * 335.00447 * 21 19 17 25 25 C 1.47427 * 108.70367 * 358.93879 * 16 15 13 26 26 C 1.54915 * 104.82948 * 24.12657 * 25 16 15 27 27 H 1.09010 * 111.00159 * 81.06645 * 26 25 16 28 28 C 1.52993 * 111.00076 * 204.91399 * 26 25 16 29 29 C 1.38915 * 119.95794 * 0.25507 * 6 5 4 30 30 C 1.38053 * 119.97883 * 359.46798 * 29 6 5 31 31 H 1.08997 * 109.47425 * 299.99586 * 1 2 3 32 32 H 1.09003 * 109.47277 * 60.00100 * 1 2 3 33 33 H 1.09009 * 109.47240 * 179.97438 * 1 2 3 34 34 H 1.07997 * 119.98746 * 359.97438 * 4 3 2 35 35 H 1.07997 * 120.00494 * 180.02562 * 5 4 3 36 36 H 0.97001 * 119.99054 * 215.10374 * 7 6 5 37 37 H 0.97001 * 119.99480 * 359.72506 * 12 10 8 38 38 H 1.09004 * 109.87779 * 338.85807 * 15 13 12 39 39 H 1.08997 * 109.88641 * 99.86620 * 15 13 12 40 40 H 0.96995 * 119.99947 * 179.97438 * 20 19 17 41 41 H 1.08993 * 110.36261 * 142.96466 * 25 16 15 42 42 H 1.08998 * 110.36633 * 265.29190 * 25 16 15 43 43 H 1.09005 * 109.47157 * 172.19695 * 28 26 25 44 44 H 1.08997 * 109.47720 * 292.19449 * 28 26 25 45 45 H 1.08999 * 109.47436 * 52.20466 * 28 26 25 46 46 H 1.07998 * 120.00611 * 179.72438 * 29 6 5 47 47 H 1.08002 * 119.98612 * 180.27720 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4318 1.2835 -0.0005 5 6 4.0594 2.5132 -0.0011 6 6 3.3031 3.6785 -0.0005 7 7 3.9382 4.9248 -0.0005 8 6 5.0946 5.0919 -0.6722 9 8 5.6285 4.1420 -1.2071 10 6 5.7193 6.4456 -0.7581 11 8 5.1852 7.3953 -0.2235 12 7 6.8755 6.6128 -1.4301 13 6 7.4880 7.9409 -1.5149 14 1 7.3488 8.4884 -0.5827 15 6 6.9093 8.7341 -2.7056 16 7 8.0227 9.4702 -3.3221 17 6 7.9318 10.2799 -4.4226 18 1 8.8241 10.7142 -4.8487 19 6 6.6927 10.5427 -4.9905 20 7 5.6175 9.9359 -4.5342 21 14 6.5511 11.7576 -6.4024 22 1 6.5912 11.0237 -7.6928 23 1 5.2677 12.4965 -6.2928 24 1 7.6819 12.7184 -6.3441 25 6 9.2531 9.1928 -2.5587 26 6 8.9940 7.8292 -1.8709 27 1 9.1723 7.0037 -2.5602 28 6 9.8463 7.6808 -0.6090 29 6 1.9159 3.6053 0.0059 30 6 1.2901 2.3747 0.0006 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 4.0195 0.3775 -0.0005 35 1 5.1379 2.5691 -0.0019 36 1 3.5461 5.6688 0.4829 37 1 7.3039 5.8531 -1.8546 38 1 6.4720 8.0477 -3.4307 39 1 6.1507 9.4324 -2.3522 40 1 4.7517 10.1198 -4.9308 41 1 10.1084 9.1224 -3.2305 42 1 9.4191 9.9690 -1.8117 43 1 9.5465 6.7810 -0.0717 44 1 10.8974 7.6045 -0.8873 45 1 9.7021 8.5511 0.0312 46 1 1.3273 4.5107 0.0108 47 1 0.2116 2.3176 0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207885991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:06 Heat of formation + Delta-G solvation = -42.384648 kcal Electronic energy + Delta-G solvation = -29877.543779 eV Core-core repulsion = 25641.025968 eV Total energy + Delta-G solvation = -4236.517811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.09789 -40.13817 -39.02174 -37.65189 -37.33313 -34.84725 -33.85988 -32.63959 -31.38254 -30.40898 -29.57958 -28.16223 -27.50651 -25.72668 -24.95132 -23.44425 -23.14449 -21.93650 -20.58818 -20.13432 -19.75211 -18.62755 -18.31866 -17.50252 -16.91457 -16.37985 -16.33682 -16.02309 -15.64577 -15.56807 -14.96314 -14.71716 -14.23817 -14.09609 -13.91843 -13.73726 -13.39899 -13.24629 -13.07851 -12.97980 -12.84414 -12.75683 -12.36863 -12.03546 -11.74472 -11.69275 -11.51566 -11.39137 -11.14468 -11.07328 -10.78553 -10.66889 -10.44249 -10.16599 -10.02652 -9.97182 -9.75910 -9.49911 -9.23320 -8.71135 -8.60253 -8.00193 -6.85812 -5.72079 -3.06593 0.93073 1.08460 1.62197 2.35278 2.99179 3.26508 3.40209 3.45421 3.47880 3.56039 3.68046 4.46137 4.49242 4.54973 4.60702 4.76014 4.80515 4.99559 5.00108 5.11679 5.14824 5.27355 5.32120 5.38487 5.52269 5.62104 5.69592 5.72778 5.90925 5.92916 6.02227 6.04503 6.09833 6.11073 6.17214 6.27918 6.42797 6.53791 6.56719 6.59352 6.84557 6.94321 7.09831 7.37834 7.53313 7.63360 7.76708 7.81815 8.16533 8.23971 9.19179 9.80221 10.44710 11.39223 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.002217 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.256679 B =12624.299901 C =13948.783963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.112 3.888 4 C -0.133 4.133 5 C -0.079 4.079 6 C 0.107 3.893 7 N -0.645 5.645 8 C 0.512 3.488 9 O -0.504 6.504 10 C 0.508 3.492 11 O -0.516 6.516 12 N -0.676 5.676 13 C 0.117 3.883 14 H 0.093 0.907 15 C 0.173 3.827 16 N -0.605 5.605 17 C -0.231 4.231 18 H 0.080 0.920 19 C -0.007 4.007 20 N -0.918 5.918 21 Si 0.912 3.088 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.141 3.859 26 C -0.114 4.114 27 H 0.080 0.920 28 C -0.138 4.138 29 C -0.099 4.099 30 C -0.189 4.189 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.135 0.865 35 H 0.148 0.852 36 H 0.423 0.577 37 H 0.409 0.591 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.253 0.747 41 H 0.044 0.956 42 H 0.024 0.976 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.133 0.867 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.029 -17.586 13.076 22.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.067 3.933 4 C -0.152 4.152 5 C -0.099 4.099 6 C 0.014 3.986 7 N -0.292 5.292 8 C 0.294 3.706 9 O -0.378 6.378 10 C 0.287 3.713 11 O -0.392 6.392 12 N -0.328 5.328 13 C 0.013 3.987 14 H 0.111 0.889 15 C 0.047 3.953 16 N -0.332 5.332 17 C -0.359 4.359 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.565 5.565 21 Si 0.742 3.258 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.015 3.985 26 C -0.134 4.134 27 H 0.099 0.901 28 C -0.196 4.196 29 C -0.119 4.119 30 C -0.209 4.209 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.153 0.847 35 H 0.165 0.835 36 H 0.261 0.739 37 H 0.244 0.756 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.150 0.850 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.076 -17.606 12.900 22.656 hybrid contribution -0.582 0.794 -0.864 1.310 sum -6.658 -16.811 12.036 21.721 Atomic orbital electron populations 1.23057 0.78456 1.03920 1.01402 1.86080 1.21325 1.26879 1.88899 1.19056 0.92365 0.84164 0.97743 1.20340 0.91204 0.98378 1.05283 1.21152 1.01248 0.89896 0.97619 1.17663 0.91374 0.84878 1.04724 1.43094 1.23518 1.12126 1.50480 1.20534 0.81508 0.90015 0.78544 1.90742 1.61323 1.41563 1.44198 1.19649 0.82599 0.88097 0.80952 1.90793 1.61427 1.41127 1.45824 1.45744 1.22505 1.12441 1.52077 1.22709 0.92178 0.81987 1.01839 0.88944 1.21494 0.90006 0.93831 0.89983 1.44386 1.02870 1.54631 1.31312 1.19049 0.93130 1.20872 1.02870 0.90228 1.24850 0.95502 1.00161 0.99885 1.69964 0.98251 1.44625 1.43695 0.86105 0.77147 0.80817 0.81711 1.21689 1.21644 1.20589 1.21597 0.91109 0.91966 0.93843 1.22645 0.93323 1.00239 0.97181 0.90133 1.21712 0.99404 1.01476 0.97023 1.20752 0.92370 0.98131 1.00626 1.21012 1.00051 0.91574 1.08236 0.92638 0.92585 0.88290 0.84715 0.83465 0.73887 0.75557 0.93389 0.92779 0.93697 0.93815 0.95820 0.93031 0.92569 0.92480 0.84962 0.84980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.04 10.50 -19.59 -0.21 -3.24 16 3 C 0.11 1.16 6.69 -39.20 -0.26 0.90 16 4 C -0.13 -1.43 9.98 -39.46 -0.39 -1.82 16 5 C -0.08 -0.94 8.69 -39.39 -0.34 -1.28 16 6 C 0.11 1.26 6.30 -83.69 -0.53 0.73 16 7 N -0.65 -7.87 5.32 -10.27 -0.05 -7.92 16 8 C 0.51 7.46 7.73 -11.64 -0.09 7.37 16 9 O -0.50 -7.90 13.91 5.47 0.08 -7.82 16 10 C 0.51 8.39 7.88 -11.64 -0.09 8.30 16 11 O -0.52 -9.70 16.21 5.48 0.09 -9.61 16 12 N -0.68 -11.06 5.12 -52.50 -0.27 -11.33 16 13 C 0.12 2.17 2.70 -66.10 -0.18 1.99 16 14 H 0.09 1.75 7.60 -51.93 -0.39 1.36 16 15 C 0.17 4.21 5.13 -3.06 -0.02 4.20 16 16 N -0.61 -15.30 3.39 -170.07 -0.58 -15.88 16 17 C -0.23 -6.42 10.27 -15.06 -0.15 -6.58 16 18 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 20 N -0.92 -27.37 10.34 55.49 0.57 -26.79 16 21 Si 0.91 22.24 29.56 -169.99 -5.02 17.21 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.14 2.80 6.70 -2.52 -0.02 2.79 16 26 C -0.11 -1.85 3.25 -88.47 -0.29 -2.14 16 27 H 0.08 1.28 8.00 -51.92 -0.42 0.86 16 28 C -0.14 -1.77 9.31 37.15 0.35 -1.42 16 29 C -0.10 -0.98 9.96 -39.40 -0.39 -1.37 16 30 C -0.19 -1.74 9.03 -39.46 -0.36 -2.10 16 31 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 32 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 33 H 0.10 0.36 8.14 -51.92 -0.42 -0.06 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.15 1.82 6.22 -52.49 -0.33 1.49 16 36 H 0.42 4.50 8.30 -40.82 -0.34 4.16 16 37 H 0.41 6.00 7.98 -40.82 -0.33 5.68 16 38 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 39 H 0.05 1.52 7.37 -51.93 -0.38 1.14 16 40 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.02 0.47 7.98 -51.93 -0.41 0.05 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.73 8.07 -51.93 -0.42 0.31 16 46 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 47 H 0.13 0.89 6.29 -52.49 -0.33 0.56 16 LS Contribution 389.96 15.07 5.88 5.88 Total: -1.00 -33.57 389.96 -7.99 -41.56 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -6.61 Total: 7.55 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: -1.87 Total: 10.39 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: -0.33 Total: -61.92 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.04 Total: -20.67 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.57 -7.99 -41.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207885991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.822 kcal (2) G-P(sol) polarization free energy of solvation -33.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds