Wall clock time and date at job start Wed Apr 1 2020 05:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35952 * 116.99827 * 2 1 4 4 C 1.38749 * 119.97942 * 180.02562 * 3 2 1 5 5 C 1.38060 * 120.01844 * 179.97438 * 4 3 2 6 6 C 1.38919 * 119.98058 * 0.02562 * 5 4 3 7 7 N 1.39873 * 120.01675 * 179.97438 * 6 5 4 8 8 C 1.34775 * 120.00180 * 35.10460 * 7 6 5 9 9 O 1.21385 * 119.99805 * 355.39424 * 8 7 6 10 10 C 1.49332 * 119.99818 * 175.40188 * 8 7 6 11 11 O 1.21368 * 119.99917 * 359.97438 * 10 8 7 12 12 N 1.34775 * 120.00243 * 180.02562 * 10 8 7 13 13 C 1.46494 * 120.00418 * 179.97438 * 12 10 8 14 14 H 1.09004 * 110.64085 * 36.68693 * 13 12 10 15 15 C 1.54324 * 110.72275 * 273.54803 * 13 12 10 16 16 N 1.47025 * 107.27193 * 219.44204 * 15 13 12 17 17 C 1.36935 * 125.64685 * 178.97248 * 16 15 13 18 18 H 1.07999 * 119.99833 * 185.01437 * 17 16 15 19 19 C 1.38811 * 120.00275 * 5.01466 * 17 16 15 20 20 N 1.31623 * 120.00022 * 354.93498 * 19 17 16 21 21 Si 1.86794 * 120.00152 * 174.93078 * 19 17 16 22 22 H 1.48505 * 109.46962 * 95.00376 * 21 19 17 23 23 H 1.48499 * 109.47452 * 215.00365 * 21 19 17 24 24 H 1.48506 * 109.47550 * 335.00447 * 21 19 17 25 25 C 1.47427 * 108.70367 * 358.93879 * 16 15 13 26 26 C 1.54915 * 104.82948 * 24.12657 * 25 16 15 27 27 H 1.09010 * 111.00159 * 81.06645 * 26 25 16 28 28 C 1.52993 * 111.00076 * 204.91399 * 26 25 16 29 29 C 1.38915 * 119.95794 * 0.25507 * 6 5 4 30 30 C 1.38053 * 119.97883 * 359.46798 * 29 6 5 31 31 H 1.08997 * 109.47425 * 299.99586 * 1 2 3 32 32 H 1.09003 * 109.47277 * 60.00100 * 1 2 3 33 33 H 1.09009 * 109.47240 * 179.97438 * 1 2 3 34 34 H 1.07997 * 119.98746 * 359.97438 * 4 3 2 35 35 H 1.07997 * 120.00494 * 180.02562 * 5 4 3 36 36 H 0.97001 * 119.99054 * 215.10374 * 7 6 5 37 37 H 0.97001 * 119.99480 * 359.72506 * 12 10 8 38 38 H 1.09004 * 109.87779 * 338.85807 * 15 13 12 39 39 H 1.08997 * 109.88641 * 99.86620 * 15 13 12 40 40 H 0.96995 * 119.99947 * 179.97438 * 20 19 17 41 41 H 1.08993 * 110.36261 * 142.96466 * 25 16 15 42 42 H 1.08998 * 110.36633 * 265.29190 * 25 16 15 43 43 H 1.09005 * 109.47157 * 172.19695 * 28 26 25 44 44 H 1.08997 * 109.47720 * 292.19449 * 28 26 25 45 45 H 1.08999 * 109.47436 * 52.20466 * 28 26 25 46 46 H 1.07998 * 120.00611 * 179.72438 * 29 6 5 47 47 H 1.08002 * 119.98612 * 180.27720 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4318 1.2835 -0.0005 5 6 4.0594 2.5132 -0.0011 6 6 3.3031 3.6785 -0.0005 7 7 3.9382 4.9248 -0.0005 8 6 5.0946 5.0919 -0.6722 9 8 5.6285 4.1420 -1.2071 10 6 5.7193 6.4456 -0.7581 11 8 5.1852 7.3953 -0.2235 12 7 6.8755 6.6128 -1.4301 13 6 7.4880 7.9409 -1.5149 14 1 7.3488 8.4884 -0.5827 15 6 6.9093 8.7341 -2.7056 16 7 8.0227 9.4702 -3.3221 17 6 7.9318 10.2799 -4.4226 18 1 8.8241 10.7142 -4.8487 19 6 6.6927 10.5427 -4.9905 20 7 5.6175 9.9359 -4.5342 21 14 6.5511 11.7576 -6.4024 22 1 6.5912 11.0237 -7.6928 23 1 5.2677 12.4965 -6.2928 24 1 7.6819 12.7184 -6.3441 25 6 9.2531 9.1928 -2.5587 26 6 8.9940 7.8292 -1.8709 27 1 9.1723 7.0037 -2.5602 28 6 9.8463 7.6808 -0.6090 29 6 1.9159 3.6053 0.0059 30 6 1.2901 2.3747 0.0006 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 4.0195 0.3775 -0.0005 35 1 5.1379 2.5691 -0.0019 36 1 3.5461 5.6688 0.4829 37 1 7.3039 5.8531 -1.8546 38 1 6.4720 8.0477 -3.4307 39 1 6.1507 9.4324 -2.3522 40 1 4.7517 10.1198 -4.9308 41 1 10.1084 9.1224 -3.2305 42 1 9.4191 9.9690 -1.8117 43 1 9.5465 6.7810 -0.0717 44 1 10.8974 7.6045 -0.8873 45 1 9.7021 8.5511 0.0312 46 1 1.3273 4.5107 0.0108 47 1 0.2116 2.3176 0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207885991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:05 Heat of formation + Delta-G solvation = -66.389305 kcal Electronic energy + Delta-G solvation = -29878.584699 eV Core-core repulsion = 25641.025968 eV Total energy + Delta-G solvation = -4237.558731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.20429 -41.08374 -40.24078 -39.07960 -38.34372 -36.04768 -35.36180 -34.26537 -32.18730 -32.15817 -30.47431 -29.72828 -28.15950 -27.43688 -26.28187 -24.93813 -23.95607 -23.03187 -22.03279 -21.64876 -21.09607 -19.74325 -19.11910 -18.92181 -18.51016 -17.65401 -17.29615 -17.00659 -16.89583 -16.63191 -16.60044 -15.70856 -15.63183 -15.48106 -15.10339 -14.80133 -14.71683 -14.51200 -14.27236 -14.10489 -13.87155 -13.77931 -13.68544 -13.35393 -13.07256 -13.04497 -12.90854 -12.68383 -12.59415 -12.36222 -12.21343 -12.06693 -11.86523 -11.85199 -11.66287 -11.50166 -11.06174 -10.77047 -10.73727 -10.22398 -10.05129 -8.92868 -8.84294 -7.86757 -5.23281 -0.07581 0.29439 0.54031 1.16412 1.44618 1.46661 1.56059 2.03118 2.36427 2.45781 2.53782 2.71897 3.25826 3.32399 3.58431 3.74163 3.78656 3.89088 4.00092 4.07183 4.16213 4.32005 4.41234 4.43141 4.43656 4.50267 4.58964 4.69735 4.73395 4.82988 4.88883 4.98039 4.99924 5.07580 5.07810 5.18549 5.25844 5.28090 5.29196 5.45074 5.48855 5.50988 5.70092 5.72378 5.89432 6.15711 6.26921 6.40848 6.63626 6.85584 7.06289 7.74554 8.38224 9.23164 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.002217 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.256679 B =12624.299901 C =13948.783963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.334 6.334 3 C 0.110 3.890 4 C -0.144 4.144 5 C -0.089 4.089 6 C 0.082 3.918 7 N -0.631 5.631 8 C 0.517 3.483 9 O -0.517 6.517 10 C 0.508 3.492 11 O -0.542 6.542 12 N -0.671 5.671 13 C 0.133 3.867 14 H 0.090 0.910 15 C 0.186 3.814 16 N -0.627 5.627 17 C -0.240 4.240 18 H 0.089 0.911 19 C -0.071 4.071 20 N -0.952 5.952 21 Si 0.979 3.021 22 H -0.287 1.287 23 H -0.297 1.297 24 H -0.264 1.264 25 C 0.133 3.867 26 C -0.096 4.096 27 H 0.089 0.911 28 C -0.130 4.130 29 C -0.095 4.095 30 C -0.186 4.186 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.118 0.882 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.430 0.570 37 H 0.418 0.582 38 H 0.010 0.990 39 H 0.003 0.997 40 H 0.244 0.756 41 H 0.055 0.945 42 H 0.032 0.968 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.057 0.943 46 H 0.152 0.848 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.756 -18.697 13.742 23.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.247 6.247 3 C 0.065 3.935 4 C -0.163 4.163 5 C -0.109 4.109 6 C -0.011 4.011 7 N -0.278 5.278 8 C 0.298 3.702 9 O -0.393 6.393 10 C 0.288 3.712 11 O -0.419 6.419 12 N -0.322 5.322 13 C 0.028 3.972 14 H 0.108 0.892 15 C 0.060 3.940 16 N -0.354 5.354 17 C -0.369 4.369 18 H 0.107 0.893 19 C -0.263 4.263 20 N -0.601 5.601 21 Si 0.808 3.192 22 H -0.214 1.214 23 H -0.224 1.224 24 H -0.189 1.189 25 C 0.008 3.992 26 C -0.116 4.116 27 H 0.107 0.893 28 C -0.187 4.187 29 C -0.115 4.115 30 C -0.205 4.205 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.161 0.839 35 H 0.155 0.845 36 H 0.269 0.731 37 H 0.256 0.744 38 H 0.029 0.971 39 H 0.022 0.978 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.076 0.924 46 H 0.170 0.830 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.777 -18.746 13.592 23.865 hybrid contribution -0.747 1.064 -1.042 1.666 sum -6.523 -17.682 12.551 22.644 Atomic orbital electron populations 1.23375 0.76361 1.05663 1.02416 1.86069 1.23531 1.26511 1.88625 1.19210 0.92388 0.84982 0.96967 1.20472 0.91979 0.98317 1.05582 1.21121 1.00917 0.90542 0.98360 1.17862 0.92268 0.84292 1.06644 1.42980 1.22565 1.12795 1.49450 1.20061 0.82250 0.88727 0.79118 1.90741 1.61949 1.41410 1.45189 1.20051 0.82228 0.88778 0.80159 1.90777 1.61991 1.42267 1.46864 1.45607 1.22651 1.11854 1.52128 1.22327 0.93649 0.82301 0.98914 0.89155 1.21120 0.89379 0.92527 0.90976 1.44700 1.05024 1.54402 1.31273 1.19508 0.93428 1.20587 1.03390 0.89290 1.25739 0.95372 1.02283 1.02938 1.70219 0.98365 1.46259 1.45240 0.85045 0.77023 0.78666 0.78509 1.21403 1.22391 1.18873 1.21871 0.89292 0.94102 0.93899 1.22581 0.91741 0.98388 0.98872 0.89271 1.21668 0.99813 1.02316 0.94941 1.21010 0.91654 0.99370 0.99453 1.21324 1.01466 0.90756 1.06992 0.91291 0.91793 0.86390 0.83882 0.84507 0.73090 0.74389 0.97143 0.97829 0.94634 0.92638 0.94995 0.91471 0.90313 0.92370 0.82991 0.82173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.78 10.50 -93.00 -0.98 -6.76 16 3 C 0.11 2.12 6.69 22.51 0.15 2.27 16 4 C -0.14 -3.04 9.98 22.35 0.22 -2.82 16 5 C -0.09 -2.12 8.69 22.39 0.19 -1.92 16 6 C 0.08 1.89 6.30 38.18 0.24 2.13 16 7 N -0.63 -15.34 5.32 -304.75 -1.62 -16.96 16 8 C 0.52 15.19 7.73 87.23 0.67 15.87 16 9 O -0.52 -16.30 13.91 -3.36 -0.05 -16.35 16 10 C 0.51 17.08 7.88 87.23 0.69 17.77 16 11 O -0.54 -20.93 16.21 -3.30 -0.05 -20.98 16 12 N -0.67 -22.07 5.12 -438.37 -2.25 -24.32 16 13 C 0.13 4.98 2.70 46.18 0.12 5.10 16 14 H 0.09 3.45 7.60 -2.38 -0.02 3.43 16 15 C 0.19 9.51 5.13 86.73 0.44 9.96 16 16 N -0.63 -32.29 3.39 -691.98 -2.35 -34.64 16 17 C -0.24 -13.53 10.27 84.03 0.86 -12.67 16 18 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 19 C -0.07 -4.11 5.48 84.86 0.47 -3.64 16 20 N -0.95 -59.33 10.34 21.65 0.22 -59.11 16 21 Si 0.98 46.59 29.56 68.60 2.03 48.62 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 23 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 24 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 25 C 0.13 5.15 6.70 86.86 0.58 5.73 16 26 C -0.10 -2.97 3.25 -9.40 -0.03 -3.00 16 27 H 0.09 2.64 8.00 -2.38 -0.02 2.62 16 28 C -0.13 -2.90 9.31 71.98 0.67 -2.23 16 29 C -0.09 -1.73 9.96 22.39 0.22 -1.51 16 30 C -0.19 -3.03 9.03 22.35 0.20 -2.83 16 31 H 0.07 0.42 7.66 -2.39 -0.02 0.40 16 32 H 0.06 0.46 7.66 -2.39 -0.02 0.44 16 33 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 35 H 0.14 3.46 6.22 -2.91 -0.02 3.44 16 36 H 0.43 9.08 8.30 -92.71 -0.77 8.31 16 37 H 0.42 12.14 7.98 -92.71 -0.74 11.40 16 38 H 0.01 0.60 7.42 -2.39 -0.02 0.58 16 39 H 0.00 0.21 7.37 -2.39 -0.02 0.19 16 40 H 0.24 14.92 8.31 -92.71 -0.77 14.15 16 41 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.03 1.20 7.98 -2.39 -0.02 1.18 16 43 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.06 1.31 8.07 -2.39 -0.02 1.29 16 46 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 47 H 0.16 1.63 6.29 -2.91 -0.02 1.61 16 Total: -1.00 -76.00 389.96 1.29 -74.71 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: -0.49 Total: 26.33 kcal Atomic # 6 Polarization: 22.63 SS G_CDS: 6.83 Total: 29.46 kcal Atomic # 7 Polarization: -129.03 SS G_CDS: -5.99 Total: -135.02 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -1.08 Total: -44.08 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -76.00 1.29 -74.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207885991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.317 kcal (2) G-P(sol) polarization free energy of solvation -76.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds