Wall clock time and date at job start Wed Apr 1 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47292 * 2 1 4 4 C 1.50695 * 109.47413 * 239.99266 * 2 1 3 5 5 C 1.38236 * 119.61456 * 84.99909 * 4 2 1 6 6 C 1.38629 * 119.16129 * 179.97438 * 5 4 2 7 7 C 1.38672 * 118.42139 * 0.02562 * 6 5 4 8 8 C 1.38185 * 119.16280 * 359.97438 * 7 6 5 9 9 N 1.31848 * 119.62609 * 264.73020 * 4 2 1 10 10 N 1.46507 * 109.46782 * 119.99828 * 2 1 3 11 11 C 1.46498 * 120.00371 * 60.00236 * 10 2 1 12 12 C 1.34778 * 119.99689 * 240.00076 * 10 2 1 13 13 O 1.21355 * 119.99988 * 3.39844 * 12 10 2 14 14 C 1.49454 * 119.99799 * 183.40265 * 12 10 2 15 15 O 1.21340 * 119.99855 * 359.84254 * 14 12 10 16 16 N 1.34778 * 119.99676 * 179.84432 * 14 12 10 17 17 C 1.47418 * 125.65265 * 0.04248 * 16 14 12 18 18 C 1.54903 * 104.83440 * 204.09445 * 17 16 14 19 19 C 1.55399 * 101.66520 * 323.06945 * 18 17 16 20 20 O 1.42895 * 110.69967 * 277.05214 * 19 18 17 21 21 C 1.50706 * 110.85668 * 153.69952 * 19 18 17 22 22 H 1.07997 * 120.00036 * 271.12064 * 21 19 18 23 23 C 1.37879 * 119.99851 * 91.10818 * 21 19 18 24 24 N 1.31516 * 119.99857 * 171.74033 * 23 21 19 25 25 Si 1.86800 * 120.00149 * 351.75249 * 23 21 19 26 26 H 1.48502 * 109.47392 * 84.71831 * 25 23 21 27 27 H 1.48501 * 109.47161 * 204.72069 * 25 23 21 28 28 H 1.48499 * 109.47052 * 324.72059 * 25 23 21 29 29 C 1.47018 * 125.64539 * 179.97438 * 16 14 12 30 30 H 1.09005 * 109.46796 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47219 * 299.99944 * 1 2 3 32 32 H 1.08992 * 109.47045 * 60.00595 * 1 2 3 33 33 H 1.08003 * 120.41501 * 359.95964 * 5 4 2 34 34 H 1.08000 * 120.78680 * 180.02562 * 6 5 4 35 35 H 1.07991 * 120.42079 * 180.02562 * 7 6 5 36 36 H 1.07999 * 119.61879 * 179.97438 * 8 7 6 37 37 H 1.08995 * 109.46860 * 263.78343 * 11 10 2 38 38 H 1.09008 * 109.46842 * 23.78377 * 11 10 2 39 39 H 1.08995 * 109.47199 * 143.78473 * 11 10 2 40 40 H 1.09004 * 110.36761 * 322.92949 * 17 16 14 41 41 H 1.09001 * 110.37120 * 85.14038 * 17 16 14 42 42 H 1.08999 * 111.01032 * 81.06017 * 18 17 16 43 43 H 1.09004 * 111.00777 * 204.91322 * 18 17 16 44 44 H 0.96698 * 114.00359 * 169.74622 * 20 19 18 45 45 H 0.96998 * 119.99707 * 180.02562 * 24 23 21 46 46 H 1.09005 * 109.88292 * 298.39253 * 29 16 14 47 47 H 1.08999 * 109.88661 * 59.40883 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 6 2.1614 -0.0133 -2.4170 6 6 2.6249 -0.6761 -3.5429 7 6 2.9424 -2.0215 -3.4328 8 6 2.7877 -2.6523 -2.2131 9 7 2.3490 -1.9886 -1.1613 10 7 2.0183 -0.6906 1.1963 11 6 1.6644 -2.0932 1.4282 12 6 2.7931 -0.0355 2.0834 13 8 3.0355 1.1427 1.9235 14 6 3.3538 -0.7603 3.2641 15 8 3.1092 -1.9378 3.4254 16 7 4.1312 -0.1060 4.1495 17 6 4.5061 1.3178 4.0762 18 6 5.8234 1.4233 4.8842 19 6 5.5649 0.4166 6.0394 20 8 4.8064 1.0300 7.0837 21 6 6.8629 -0.1325 6.5732 22 1 7.2958 -1.0188 6.1334 23 6 7.4979 0.4968 7.6229 24 7 8.5391 -0.0674 8.1950 25 14 6.8792 2.1505 8.2326 26 1 5.7768 1.9388 9.2049 27 1 7.9897 2.8811 8.8946 28 1 6.3790 2.9464 7.0829 29 6 4.7447 -0.6938 5.3494 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.9040 1.0344 -2.4663 34 1 2.7362 -0.1570 -4.4834 35 1 3.3067 -2.5692 -4.2893 36 1 3.0324 -3.7000 -2.1192 37 1 0.8009 -2.1451 2.0912 38 1 1.4220 -2.5686 0.4777 39 1 2.5071 -2.6092 1.8881 40 1 4.6718 1.6136 3.0402 41 1 3.7315 1.9378 4.5276 42 1 6.6772 1.1128 4.2819 43 1 5.9657 2.4330 5.2696 44 1 4.4842 0.4100 7.7521 45 1 8.9855 0.3752 8.9337 46 1 3.9682 -1.0548 6.0238 47 1 5.4007 -1.5166 5.0652 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261484914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:24 Heat of formation + Delta-G solvation = -40.895024 kcal Electronic energy + Delta-G solvation = -31190.274799 eV Core-core repulsion = 26953.821583 eV Total energy + Delta-G solvation = -4236.453216 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.07957 -40.28700 -38.76213 -37.56899 -36.42336 -34.74247 -32.80437 -32.62987 -32.36839 -30.35079 -30.01069 -28.44774 -26.94050 -26.13048 -24.83468 -23.90611 -23.50106 -22.27724 -20.84272 -19.74198 -19.15301 -17.65699 -17.36631 -17.19037 -16.87711 -16.18053 -16.10066 -15.86469 -15.45139 -15.13983 -14.79943 -14.68700 -14.63596 -14.11280 -13.81501 -13.60512 -13.47641 -13.27811 -12.98256 -12.74031 -12.61932 -12.52039 -12.47839 -12.17945 -12.09858 -12.02147 -11.80652 -11.52252 -11.48404 -11.03938 -10.69622 -10.48065 -10.30446 -10.23127 -10.14421 -9.80043 -9.35027 -9.25029 -8.87813 -8.75971 -8.67846 -8.47556 -8.23004 -6.19741 -4.31218 0.72253 0.92396 1.65425 2.41258 3.39744 3.43207 3.46958 3.52747 3.61516 3.68941 3.85803 4.32277 4.44887 4.49872 4.50855 4.71083 4.74632 4.85626 4.92170 5.02826 5.11612 5.18639 5.24335 5.36445 5.40130 5.48945 5.57570 5.72332 5.74786 5.79953 5.82351 5.84664 5.85856 5.99733 6.14364 6.24196 6.34085 6.43776 6.46010 6.55433 6.71089 6.79520 7.06231 7.12577 7.43402 7.62653 7.68455 7.88155 8.12236 8.27584 8.61540 8.81312 9.41841 10.89089 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021619 B = 0.002493 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.868509 B =11227.690270 C =11361.929287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.184 3.816 3 H 0.119 0.881 4 C 0.121 3.879 5 C -0.163 4.163 6 C -0.072 4.072 7 C -0.177 4.177 8 C 0.102 3.898 9 N -0.468 5.468 10 N -0.571 5.571 11 C 0.059 3.941 12 C 0.510 3.490 13 O -0.523 6.523 14 C 0.513 3.487 15 O -0.526 6.526 16 N -0.576 5.576 17 C 0.096 3.904 18 C -0.126 4.126 19 C 0.219 3.781 20 O -0.561 6.561 21 C -0.553 4.553 22 H 0.081 0.919 23 C 0.076 3.924 24 N -0.887 5.887 25 Si 0.948 3.052 26 H -0.290 1.290 27 H -0.325 1.325 28 H -0.269 1.269 29 C 0.090 3.910 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.158 0.842 37 H 0.043 0.957 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.372 0.628 45 H 0.267 0.733 46 H 0.064 0.936 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.799 -1.154 -22.428 27.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.080 3.920 3 H 0.136 0.864 4 C -0.018 4.018 5 C -0.184 4.184 6 C -0.098 4.098 7 C -0.197 4.197 8 C -0.055 4.055 9 N -0.177 5.177 10 N -0.304 5.304 11 C -0.083 4.083 12 C 0.293 3.707 13 O -0.400 6.400 14 C 0.296 3.704 15 O -0.405 6.405 16 N -0.308 5.308 17 C -0.026 4.026 18 C -0.164 4.164 19 C 0.179 3.821 20 O -0.369 6.369 21 C -0.590 4.590 22 H 0.099 0.901 23 C -0.129 4.129 24 N -0.521 5.521 25 Si 0.783 3.217 26 H -0.217 1.217 27 H -0.256 1.256 28 H -0.195 1.195 29 C -0.032 4.032 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.175 0.825 37 H 0.062 0.938 38 H 0.113 0.887 39 H 0.126 0.874 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.221 0.779 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.654 -1.117 -21.887 26.932 hybrid contribution -0.195 0.609 -0.250 0.687 sum -15.849 -0.508 -22.137 27.231 Atomic orbital electron populations 1.22093 0.92844 1.03233 1.03049 1.20012 0.94827 0.96736 0.80447 0.86373 1.21538 0.95054 0.90632 0.94586 1.21872 1.01659 1.01545 0.93291 1.21576 0.95059 0.94492 0.98644 1.22170 1.02078 0.95770 0.99635 1.22882 0.94184 1.00285 0.88139 1.67576 1.10766 1.08350 1.31030 1.47530 1.48485 1.13911 1.20476 1.22690 1.02895 0.79783 1.02926 1.20320 0.79334 0.86870 0.84148 1.90687 1.58347 1.15330 1.75619 1.19543 0.80558 0.86681 0.83571 1.90610 1.60031 1.15279 1.74616 1.48475 1.45998 1.12613 1.23747 1.22738 0.97644 0.80227 1.01994 1.23236 0.95415 1.01419 0.96327 1.20180 0.89421 0.87841 0.84659 1.86115 1.72503 1.39946 1.38378 1.21141 1.05055 1.14438 1.18391 0.90103 1.25105 0.94200 0.98514 0.95122 1.69974 1.21032 1.38598 1.22532 0.85731 0.75070 0.82368 0.78528 1.21749 1.25630 1.19520 1.23087 0.96358 0.98807 0.84934 0.91616 0.91092 0.91047 0.84549 0.84686 0.84768 0.82510 0.93794 0.88723 0.87372 0.89301 0.91317 0.89731 0.89747 0.77937 0.92362 0.91728 0.90191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.18 37.16 0.34 -0.93 16 2 C 0.18 1.99 2.90 -69.08 -0.20 1.79 16 3 H 0.12 1.33 6.87 -51.93 -0.36 0.97 16 4 C 0.12 1.24 5.86 -82.59 -0.48 0.76 16 5 C -0.16 -1.32 9.77 -39.44 -0.39 -1.70 16 6 C -0.07 -0.49 10.18 -39.28 -0.40 -0.89 16 7 C -0.18 -1.21 10.11 -39.44 -0.40 -1.61 16 8 C 0.10 0.87 11.18 -17.55 -0.20 0.67 16 9 N -0.47 -5.10 6.76 -9.47 -0.06 -5.16 16 10 N -0.57 -7.79 2.69 -175.77 -0.47 -8.27 16 11 C 0.06 0.76 8.12 59.85 0.49 1.24 16 12 C 0.51 8.41 7.70 -11.58 -0.09 8.32 16 13 O -0.52 -9.12 13.11 5.49 0.07 -9.05 16 14 C 0.51 9.48 7.83 -11.58 -0.09 9.39 16 15 O -0.53 -10.18 13.40 5.51 0.07 -10.11 16 16 N -0.58 -11.08 3.33 -171.03 -0.57 -11.64 16 17 C 0.10 1.78 6.06 -2.54 -0.02 1.76 16 18 C -0.13 -2.58 5.93 -24.45 -0.15 -2.72 16 19 C 0.22 4.86 0.68 -89.80 -0.06 4.80 16 20 O -0.56 -12.07 8.71 -35.23 -0.31 -12.37 16 21 C -0.55 -14.63 8.81 -34.44 -0.30 -14.93 16 22 H 0.08 2.33 7.82 -52.49 -0.41 1.92 16 23 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16 24 N -0.89 -26.18 13.96 55.43 0.77 -25.41 16 25 Si 0.95 23.19 24.84 -169.99 -4.22 18.97 16 26 H -0.29 -6.95 7.10 56.52 0.40 -6.55 16 27 H -0.33 -8.17 7.11 56.52 0.40 -7.77 16 28 H -0.27 -6.43 5.42 56.52 0.31 -6.13 16 29 C 0.09 1.83 6.20 -3.06 -0.02 1.82 16 30 H 0.06 0.55 7.67 -51.93 -0.40 0.15 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 34 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 1.10 5.47 -51.92 -0.28 0.82 16 39 H 0.11 1.66 5.21 -52.11 -0.27 1.39 16 40 H 0.09 1.59 6.16 -51.93 -0.32 1.27 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.08 1.73 8.04 -51.93 -0.42 1.31 16 43 H 0.08 1.75 6.41 -51.93 -0.33 1.42 16 44 H 0.37 7.01 8.96 45.56 0.41 7.42 16 45 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.06 1.26 7.98 -51.93 -0.41 0.84 16 47 H 0.08 1.72 7.65 -51.93 -0.40 1.32 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -32.76 373.75 -6.95 -39.71 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.81 Total: 7.92 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -2.06 Total: 9.77 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.33 Total: -50.48 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.16 Total: -31.53 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.22 Total: 18.97 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.76 -6.95 -39.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261484914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.183 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds