Wall clock time and date at job start Wed Apr 1 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47292 * 2 1 4 4 C 1.50695 * 109.47413 * 239.99266 * 2 1 3 5 5 C 1.38236 * 119.61456 * 84.99909 * 4 2 1 6 6 C 1.38629 * 119.16129 * 179.97438 * 5 4 2 7 7 C 1.38672 * 118.42139 * 0.02562 * 6 5 4 8 8 C 1.38185 * 119.16280 * 359.97438 * 7 6 5 9 9 N 1.31848 * 119.62609 * 264.73020 * 4 2 1 10 10 N 1.46507 * 109.46782 * 119.99828 * 2 1 3 11 11 C 1.46498 * 120.00371 * 60.00236 * 10 2 1 12 12 C 1.34778 * 119.99689 * 240.00076 * 10 2 1 13 13 O 1.21355 * 119.99988 * 3.39844 * 12 10 2 14 14 C 1.49454 * 119.99799 * 183.40265 * 12 10 2 15 15 O 1.21340 * 119.99855 * 359.84254 * 14 12 10 16 16 N 1.34778 * 119.99676 * 179.84432 * 14 12 10 17 17 C 1.47418 * 125.65265 * 0.04248 * 16 14 12 18 18 C 1.54903 * 104.83440 * 204.09445 * 17 16 14 19 19 C 1.55399 * 101.66520 * 323.06945 * 18 17 16 20 20 O 1.42895 * 110.69967 * 277.05214 * 19 18 17 21 21 C 1.50706 * 110.85668 * 153.69952 * 19 18 17 22 22 H 1.07997 * 120.00036 * 271.12064 * 21 19 18 23 23 C 1.37879 * 119.99851 * 91.10818 * 21 19 18 24 24 N 1.31516 * 119.99857 * 171.74033 * 23 21 19 25 25 Si 1.86800 * 120.00149 * 351.75249 * 23 21 19 26 26 H 1.48502 * 109.47392 * 84.71831 * 25 23 21 27 27 H 1.48501 * 109.47161 * 204.72069 * 25 23 21 28 28 H 1.48499 * 109.47052 * 324.72059 * 25 23 21 29 29 C 1.47018 * 125.64539 * 179.97438 * 16 14 12 30 30 H 1.09005 * 109.46796 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47219 * 299.99944 * 1 2 3 32 32 H 1.08992 * 109.47045 * 60.00595 * 1 2 3 33 33 H 1.08003 * 120.41501 * 359.95964 * 5 4 2 34 34 H 1.08000 * 120.78680 * 180.02562 * 6 5 4 35 35 H 1.07991 * 120.42079 * 180.02562 * 7 6 5 36 36 H 1.07999 * 119.61879 * 179.97438 * 8 7 6 37 37 H 1.08995 * 109.46860 * 263.78343 * 11 10 2 38 38 H 1.09008 * 109.46842 * 23.78377 * 11 10 2 39 39 H 1.08995 * 109.47199 * 143.78473 * 11 10 2 40 40 H 1.09004 * 110.36761 * 322.92949 * 17 16 14 41 41 H 1.09001 * 110.37120 * 85.14038 * 17 16 14 42 42 H 1.08999 * 111.01032 * 81.06017 * 18 17 16 43 43 H 1.09004 * 111.00777 * 204.91322 * 18 17 16 44 44 H 0.96698 * 114.00359 * 169.74622 * 20 19 18 45 45 H 0.96998 * 119.99707 * 180.02562 * 24 23 21 46 46 H 1.09005 * 109.88292 * 298.39253 * 29 16 14 47 47 H 1.08999 * 109.88661 * 59.40883 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 6 2.1614 -0.0133 -2.4170 6 6 2.6249 -0.6761 -3.5429 7 6 2.9424 -2.0215 -3.4328 8 6 2.7877 -2.6523 -2.2131 9 7 2.3490 -1.9886 -1.1613 10 7 2.0183 -0.6906 1.1963 11 6 1.6644 -2.0932 1.4282 12 6 2.7931 -0.0355 2.0834 13 8 3.0355 1.1427 1.9235 14 6 3.3538 -0.7603 3.2641 15 8 3.1092 -1.9378 3.4254 16 7 4.1312 -0.1060 4.1495 17 6 4.5061 1.3178 4.0762 18 6 5.8234 1.4233 4.8842 19 6 5.5649 0.4166 6.0394 20 8 4.8064 1.0300 7.0837 21 6 6.8629 -0.1325 6.5732 22 1 7.2958 -1.0188 6.1334 23 6 7.4979 0.4968 7.6229 24 7 8.5391 -0.0674 8.1950 25 14 6.8792 2.1505 8.2326 26 1 5.7768 1.9388 9.2049 27 1 7.9897 2.8811 8.8946 28 1 6.3790 2.9464 7.0829 29 6 4.7447 -0.6938 5.3494 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.9040 1.0344 -2.4663 34 1 2.7362 -0.1570 -4.4834 35 1 3.3067 -2.5692 -4.2893 36 1 3.0324 -3.7000 -2.1192 37 1 0.8009 -2.1451 2.0912 38 1 1.4220 -2.5686 0.4777 39 1 2.5071 -2.6092 1.8881 40 1 4.6718 1.6136 3.0402 41 1 3.7315 1.9378 4.5276 42 1 6.6772 1.1128 4.2819 43 1 5.9657 2.4330 5.2696 44 1 4.4842 0.4100 7.7521 45 1 8.9855 0.3752 8.9337 46 1 3.9682 -1.0548 6.0238 47 1 5.4007 -1.5166 5.0652 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261484914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:23 Heat of formation + Delta-G solvation = -64.280983 kcal Electronic energy + Delta-G solvation = -31191.288890 eV Core-core repulsion = 26953.821583 eV Total energy + Delta-G solvation = -4237.467307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.18381 -41.24707 -40.15722 -39.09727 -37.53961 -36.30739 -34.46970 -33.54492 -33.34635 -32.02125 -30.67553 -30.11818 -28.17108 -27.66051 -25.99927 -24.74908 -24.44253 -23.64250 -21.93328 -21.41730 -20.44763 -19.56071 -18.40412 -18.31925 -17.87013 -17.42957 -17.24755 -17.04211 -16.71389 -16.54510 -16.46354 -15.95722 -15.41547 -15.25444 -15.04919 -14.85605 -14.57281 -14.45826 -14.25529 -14.13852 -14.02367 -13.92961 -13.55733 -13.43083 -13.29598 -13.18528 -13.02398 -12.78608 -12.73702 -12.33383 -12.28085 -12.22719 -12.04606 -11.85251 -11.25841 -10.82543 -10.71376 -10.65759 -10.42262 -10.11354 -9.93929 -9.90291 -9.62291 -8.35087 -6.48893 0.12013 0.29515 0.36521 1.15158 1.52414 1.54378 1.73658 2.05064 2.30249 2.45847 2.82458 2.95431 3.08496 3.19518 3.48195 3.71096 3.78068 4.00073 4.02619 4.09144 4.16092 4.22553 4.26833 4.28190 4.34910 4.42601 4.54658 4.65416 4.73257 4.74936 4.76683 4.81086 4.88423 4.89430 5.02918 5.11497 5.14713 5.21084 5.27805 5.28109 5.31700 5.41268 5.48946 5.79687 5.95131 6.04718 6.21615 6.53147 6.57673 6.86158 6.93081 7.03087 7.29121 8.77842 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021619 B = 0.002493 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.868509 B =11227.690270 C =11361.929287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.181 3.819 3 H 0.114 0.886 4 C 0.097 3.903 5 C -0.166 4.166 6 C -0.073 4.073 7 C -0.171 4.171 8 C 0.083 3.917 9 N -0.499 5.499 10 N -0.561 5.561 11 C 0.066 3.934 12 C 0.509 3.491 13 O -0.536 6.536 14 C 0.509 3.491 15 O -0.539 6.539 16 N -0.583 5.583 17 C 0.110 3.890 18 C -0.124 4.124 19 C 0.221 3.779 20 O -0.560 6.560 21 C -0.550 4.550 22 H 0.042 0.958 23 C 0.028 3.972 24 N -0.935 5.935 25 Si 1.006 2.994 26 H -0.278 1.278 27 H -0.335 1.335 28 H -0.257 1.257 29 C 0.099 3.901 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.156 0.844 34 H 0.165 0.835 35 H 0.162 0.838 36 H 0.171 0.829 37 H 0.049 0.951 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.384 0.616 45 H 0.268 0.732 46 H 0.075 0.925 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.945 0.150 -24.844 30.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.077 3.923 3 H 0.132 0.868 4 C -0.041 4.041 5 C -0.186 4.186 6 C -0.099 4.099 7 C -0.191 4.191 8 C -0.073 4.073 9 N -0.209 5.209 10 N -0.293 5.293 11 C -0.075 4.075 12 C 0.291 3.709 13 O -0.414 6.414 14 C 0.293 3.707 15 O -0.418 6.418 16 N -0.315 5.315 17 C -0.012 4.012 18 C -0.162 4.162 19 C 0.180 3.820 20 O -0.369 6.369 21 C -0.588 4.588 22 H 0.061 0.939 23 C -0.172 4.172 24 N -0.572 5.572 25 Si 0.838 3.162 26 H -0.205 1.205 27 H -0.268 1.268 28 H -0.182 1.182 29 C -0.024 4.024 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.173 0.827 34 H 0.183 0.817 35 H 0.179 0.821 36 H 0.188 0.812 37 H 0.068 0.932 38 H 0.128 0.872 39 H 0.102 0.898 40 H 0.116 0.884 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.235 0.765 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.848 0.165 -24.342 30.184 hybrid contribution 0.477 0.042 0.358 0.598 sum -17.370 0.207 -23.984 29.614 Atomic orbital electron populations 1.22056 0.90880 1.03422 1.04062 1.20261 0.96335 0.96203 0.79462 0.86838 1.21489 0.96737 0.90898 0.95023 1.22119 1.01146 1.02465 0.92865 1.21989 0.93898 0.94573 0.99402 1.22505 1.00719 0.96089 0.99752 1.23232 0.94508 1.01097 0.88503 1.67436 1.11977 1.08981 1.32509 1.47642 1.47013 1.14026 1.20585 1.22591 1.01852 0.79407 1.03652 1.19924 0.80125 0.86715 0.84090 1.90671 1.59316 1.15511 1.75933 1.20053 0.80094 0.86657 0.83903 1.90621 1.60340 1.15911 1.74957 1.48491 1.46497 1.12896 1.23632 1.22645 0.96518 0.79869 1.02147 1.23152 0.96509 1.00783 0.95772 1.19971 0.87842 0.88948 0.85232 1.86066 1.71976 1.40290 1.38576 1.21332 1.06683 1.12962 1.17806 0.93941 1.25861 0.94279 1.01588 0.95478 1.70089 1.22974 1.40360 1.23785 0.84784 0.74408 0.78485 0.78476 1.20463 1.26765 1.18187 1.22767 0.96229 0.97600 0.85766 0.91788 0.91485 0.88581 0.82654 0.81738 0.82069 0.81185 0.93204 0.87241 0.89805 0.88419 0.90417 0.90325 0.89485 0.76542 0.92298 0.90719 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.18 71.98 0.66 -1.47 16 2 C 0.18 3.65 2.90 44.24 0.13 3.78 16 3 H 0.11 2.39 6.87 -2.39 -0.02 2.37 16 4 C 0.10 1.84 5.86 42.55 0.25 2.08 16 5 C -0.17 -2.26 9.77 22.36 0.22 -2.04 16 6 C -0.07 -0.76 10.18 22.47 0.23 -0.53 16 7 C -0.17 -1.87 10.11 22.36 0.23 -1.65 16 8 C 0.08 1.29 11.18 84.67 0.95 2.24 16 9 N -0.50 -10.32 6.76 -183.88 -1.24 -11.57 16 10 N -0.56 -14.85 2.69 -828.36 -2.23 -17.08 16 11 C 0.07 1.69 8.12 127.77 1.04 2.73 16 12 C 0.51 16.41 7.70 87.27 0.67 17.08 16 13 O -0.54 -18.04 13.11 -3.26 -0.04 -18.08 16 14 C 0.51 18.64 7.83 87.27 0.68 19.32 16 15 O -0.54 -20.94 13.40 -3.21 -0.04 -20.98 16 16 N -0.58 -22.06 3.33 -813.39 -2.71 -24.76 16 17 C 0.11 3.90 6.06 86.85 0.53 4.43 16 18 C -0.12 -4.96 5.93 32.07 0.19 -4.77 16 19 C 0.22 9.68 0.68 -10.26 -0.01 9.68 16 20 O -0.56 -22.97 8.71 -148.98 -1.30 -24.26 16 21 C -0.55 -29.72 8.81 25.60 0.23 -29.50 16 22 H 0.04 2.57 7.82 -2.91 -0.02 2.55 16 23 C 0.03 1.58 5.46 84.65 0.46 2.04 16 24 N -0.93 -56.67 13.96 21.45 0.30 -56.37 16 25 Si 1.01 47.34 24.84 68.60 1.70 49.05 16 26 H -0.28 -12.45 7.10 99.48 0.71 -11.75 16 27 H -0.34 -16.31 7.11 99.48 0.71 -15.60 16 28 H -0.26 -11.46 5.42 99.48 0.54 -10.92 16 29 C 0.10 4.04 6.20 86.73 0.54 4.58 16 30 H 0.06 0.96 7.67 -2.38 -0.02 0.95 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 35 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 36 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 37 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.11 2.49 5.47 -2.38 -0.01 2.47 16 39 H 0.08 2.60 5.21 -5.29 -0.03 2.57 16 40 H 0.10 3.35 6.16 -2.38 -0.01 3.33 16 41 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.08 3.21 8.04 -2.39 -0.02 3.19 16 43 H 0.09 3.44 6.41 -2.38 -0.02 3.43 16 44 H 0.38 13.73 8.96 -74.06 -0.66 13.06 16 45 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 46 H 0.07 2.87 7.98 -2.38 -0.02 2.85 16 47 H 0.06 2.69 7.65 -2.39 -0.02 2.67 16 Total: -1.00 -71.43 373.75 1.59 -69.85 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.16 Total: 26.22 kcal Atomic # 6 Polarization: 21.01 SS G_CDS: 6.98 Total: 28.00 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -5.88 Total: -109.78 kcal Atomic # 8 Polarization: -61.94 SS G_CDS: -1.38 Total: -63.33 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 1.70 Total: 49.05 kcal Total: -71.43 1.59 -69.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261484914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.566 kcal (2) G-P(sol) polarization free energy of solvation -71.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds