Wall clock time and date at job start Wed Apr 1 2020 04:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.86944 * 2 1 4 4 C 1.54330 * 109.88101 * 238.99085 * 2 1 3 5 5 H 1.08990 * 110.71894 * 144.23488 * 4 2 1 6 6 N 1.46903 * 110.72041 * 21.13379 * 4 2 1 7 7 C 1.46898 * 110.99877 * 155.00369 * 6 4 2 8 8 C 1.50693 * 109.47165 * 180.02562 * 7 6 4 9 9 O 1.21296 * 119.99944 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00195 * 180.02562 * 8 7 6 11 11 C 1.37098 * 120.00446 * 179.97438 * 10 8 7 12 12 H 1.08003 * 119.99558 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00493 * 179.97438 * 11 10 8 14 14 N 1.31418 * 119.99619 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00252 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46714 * 270.00030 * 15 13 11 17 17 H 1.48498 * 109.46953 * 29.99959 * 15 13 11 18 18 H 1.48494 * 109.47047 * 149.99999 * 15 13 11 19 19 C 1.55162 * 102.93720 * 262.77170 * 4 2 1 20 20 C 1.54906 * 101.58376 * 324.50090 * 19 4 2 21 21 N 1.47017 * 109.88376 * 121.17947 * 2 1 3 22 22 C 1.34770 * 125.64803 * 300.43991 * 21 2 1 23 23 O 1.21779 * 120.00219 * 0.02562 * 22 21 2 24 24 C 1.41553 * 120.00047 * 179.97438 * 22 21 2 25 25 C 1.35621 * 120.00073 * 186.39168 * 24 22 21 26 26 C 1.41607 * 120.00200 * 9.03091 * 25 24 22 27 27 C 1.37949 * 126.10548 * 220.50438 * 26 25 24 28 28 C 1.40315 * 106.52719 * 179.97438 * 27 26 25 29 29 C 1.35150 * 107.20935 * 0.02562 * 28 27 26 30 30 O 1.34023 * 109.03210 * 359.75423 * 29 28 27 31 31 H 1.09002 * 109.46978 * 181.01124 * 1 2 3 32 32 H 1.08996 * 109.46937 * 301.01382 * 1 2 3 33 33 H 1.08994 * 109.47167 * 61.01298 * 1 2 3 34 34 H 1.00901 * 110.99754 * 278.95522 * 6 4 2 35 35 H 1.08997 * 109.47086 * 59.99585 * 7 6 4 36 36 H 1.08999 * 109.47000 * 300.00220 * 7 6 4 37 37 H 0.97000 * 119.99862 * 359.97438 * 10 8 7 38 38 H 0.96997 * 119.99448 * 180.02562 * 14 13 11 39 39 H 1.09008 * 111.00266 * 82.57675 * 19 4 2 40 40 H 1.08998 * 111.00084 * 206.41764 * 19 4 2 41 41 H 1.09002 * 110.36240 * 278.17109 * 20 19 4 42 42 H 1.09000 * 110.46112 * 155.89831 * 20 19 4 43 43 H 1.07994 * 120.00100 * 6.39947 * 24 22 21 44 44 H 1.08001 * 120.00162 * 189.02581 * 25 24 22 45 45 H 1.08002 * 126.73681 * 359.97438 * 27 26 25 46 46 H 1.08007 * 126.39427 * 179.97438 * 28 27 26 47 47 H 1.07998 * 125.48494 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 -1.2439 5 1 2.9639 -0.2789 -1.6205 6 7 1.0264 -0.7994 -2.2916 7 6 1.6355 -0.9453 -3.6204 8 6 0.5523 -0.9940 -4.6668 9 8 -0.6126 -0.9154 -4.3380 10 7 0.8777 -1.1260 -5.9680 11 6 -0.1078 -1.1708 -6.9201 12 1 -1.1450 -1.1008 -6.6273 13 6 0.2278 -1.3063 -8.2616 14 7 1.4899 -1.3920 -8.6178 15 14 -1.1150 -1.3666 -9.5588 16 1 -1.5298 -2.7759 -9.7766 17 1 -2.2826 -0.5722 -9.0999 18 1 -0.5999 -0.8000 -10.8311 19 6 2.3520 -2.1685 -0.6956 20 6 2.8569 -1.8508 0.7340 21 7 2.0301 -0.7158 1.1828 22 6 1.7755 -0.3880 2.4650 23 8 1.0757 0.5755 2.7198 24 6 2.3205 -1.1645 3.5156 25 6 1.9614 -0.9156 4.7996 26 6 0.9047 -0.0148 5.0773 27 6 0.8774 0.9178 6.0935 28 6 -0.3534 1.5838 5.9910 29 6 -1.0137 1.0447 4.9423 30 8 -0.2533 0.0879 4.3921 31 1 -0.3633 -1.0275 0.0181 32 1 -0.3633 0.5295 0.8807 33 1 -0.3633 0.4980 -0.8989 34 1 0.3657 -1.5408 -2.1133 35 1 2.2161 -1.8672 -3.6547 36 1 2.2904 -0.0961 -3.8151 37 1 1.8093 -1.1892 -6.2310 38 1 1.7241 -1.4862 -9.5544 39 1 1.4452 -2.7727 -0.6645 40 1 3.1270 -2.6600 -1.2836 41 1 3.9092 -1.5677 0.7104 42 1 2.7104 -2.7094 1.3894 43 1 3.0223 -1.9550 3.2948 44 1 2.4814 -1.4044 5.6102 45 1 1.6514 1.0996 6.8244 46 1 -0.7073 2.3784 6.6313 47 1 -1.9946 1.3400 4.6002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278212097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:48 Heat of formation + Delta-G solvation = -12.889532 kcal Electronic energy + Delta-G solvation = -29955.388755 eV Core-core repulsion = 25720.149948 eV Total energy + Delta-G solvation = -4235.238807 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.52272 -40.50723 -38.58932 -37.81755 -34.75332 -34.32147 -33.80233 -32.95927 -31.34984 -31.15367 -30.73832 -28.76849 -26.69428 -25.27870 -24.64314 -23.61593 -22.78071 -21.77891 -21.08819 -19.81965 -19.30429 -18.86854 -18.09190 -17.87548 -16.81404 -16.26225 -16.12885 -15.93807 -15.55175 -15.24971 -14.67332 -14.52765 -14.40009 -14.16947 -13.90382 -13.65305 -13.48999 -13.16873 -12.97469 -12.90751 -12.71219 -12.66374 -12.48994 -12.31142 -12.18768 -12.12858 -11.55278 -11.48424 -11.38428 -11.04923 -10.84166 -10.75284 -10.40027 -10.34391 -10.22741 -10.00707 -9.80261 -9.51990 -8.71618 -8.48161 -8.13740 -8.07211 -7.96955 -6.42900 -3.83609 0.33452 1.96841 2.52933 2.89481 3.06068 3.17171 3.26049 3.29277 3.32286 3.89228 4.03902 4.22371 4.32843 4.43307 4.54030 4.70540 4.83613 4.88295 4.90873 5.02910 5.09077 5.14504 5.16620 5.24470 5.30668 5.43269 5.52656 5.54770 5.63411 5.68172 5.76286 5.77187 5.78130 5.87246 5.92908 6.00583 6.06949 6.21142 6.25986 6.37654 6.51535 6.66178 7.07415 7.16734 7.44796 7.54367 7.58991 8.05167 8.12992 8.59922 9.16897 9.52992 10.04340 10.74790 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026279 B = 0.001825 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.231312 B =15338.670225 C =16134.205505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.146 3.854 3 H 0.075 0.925 4 C 0.082 3.918 5 H 0.093 0.907 6 N -0.653 5.653 7 C 0.050 3.950 8 C 0.440 3.560 9 O -0.582 6.582 10 N -0.563 5.563 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.269 1.269 18 H -0.284 1.284 19 C -0.166 4.166 20 C 0.102 3.898 21 N -0.612 5.612 22 C 0.554 3.446 23 O -0.521 6.521 24 C -0.202 4.202 25 C 0.003 3.997 26 C 0.006 3.994 27 C -0.181 4.181 28 C -0.228 4.228 29 C -0.013 4.013 30 O -0.132 6.132 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.354 0.646 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.136 0.864 44 H 0.154 0.846 45 H 0.147 0.853 46 H 0.146 0.854 47 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.768 -1.224 27.119 27.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.043 3.957 3 H 0.093 0.907 4 C -0.030 4.030 5 H 0.111 0.889 6 N -0.285 5.285 7 C -0.082 4.082 8 C 0.226 3.774 9 O -0.467 6.467 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.194 1.194 18 H -0.209 1.209 19 C -0.206 4.206 20 C -0.021 4.021 21 N -0.347 5.347 22 C 0.346 3.654 23 O -0.400 6.400 24 C -0.223 4.223 25 C -0.017 4.017 26 C -0.045 4.045 27 C -0.201 4.201 28 C -0.247 4.247 29 C -0.084 4.084 30 O -0.025 6.025 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.175 0.825 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.153 0.847 44 H 0.172 0.828 45 H 0.165 0.835 46 H 0.163 0.837 47 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 5.530 -0.148 27.002 27.563 hybrid contribution 0.532 -0.944 -0.832 1.366 sum 6.063 -1.091 26.170 26.886 Atomic orbital electron populations 1.21904 0.93609 1.01948 1.03228 1.21465 0.95966 0.95406 0.82909 0.90657 1.22622 0.94965 0.93898 0.91513 0.88927 1.60042 1.15041 1.53756 0.99667 1.21715 0.96463 1.00840 0.89196 1.19792 0.89686 0.84488 0.83472 1.90534 1.19873 1.55298 1.80957 1.41859 1.09813 1.63760 1.04581 1.19703 0.90293 1.46981 0.85875 0.87918 1.25263 0.97170 0.97316 0.98217 1.69613 1.16212 1.50155 1.18340 0.85854 0.80455 0.78491 0.79477 1.20445 1.19395 1.20923 1.23570 1.02625 0.98860 0.95523 1.22259 0.94920 0.89218 0.95747 1.48538 1.50621 1.30201 1.05325 1.16720 0.81296 0.85613 0.81755 1.90873 1.37621 1.28914 1.82589 1.22301 1.04573 1.02072 0.93318 1.20626 0.91599 0.92558 0.96907 1.19560 0.89075 1.02021 0.93808 1.22125 0.98965 0.98801 1.00193 1.21618 0.96138 1.04918 1.02014 1.24177 0.97683 0.91164 0.95377 1.84286 1.24522 1.46577 1.47093 0.93451 0.92195 0.89579 0.82489 0.93744 0.89510 0.77474 0.91886 0.90172 0.89655 0.91180 0.90677 0.84651 0.82810 0.83532 0.83665 0.78531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.26 37.16 0.31 -1.85 16 2 C 0.15 1.87 3.48 -66.95 -0.23 1.63 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.08 0.95 3.15 -65.87 -0.21 0.75 16 5 H 0.09 1.01 7.82 -51.93 -0.41 0.60 16 6 N -0.65 -9.93 4.39 -106.06 -0.47 -10.40 16 7 C 0.05 0.84 6.03 -4.98 -0.03 0.81 16 8 C 0.44 10.15 7.82 -10.99 -0.09 10.06 16 9 O -0.58 -15.59 15.78 5.54 0.09 -15.50 16 10 N -0.56 -14.06 5.29 -10.96 -0.06 -14.11 16 11 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 12 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 15 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 C -0.17 -1.52 6.67 -24.58 -0.16 -1.69 16 20 C 0.10 0.82 6.45 -2.53 -0.02 0.81 16 21 N -0.61 -6.91 3.08 -166.41 -0.51 -7.42 16 22 C 0.55 6.93 7.19 -15.00 -0.11 6.83 16 23 O -0.52 -8.23 11.33 -19.69 -0.22 -8.45 16 24 C -0.20 -1.80 9.31 -39.25 -0.37 -2.16 16 25 C 0.00 0.02 9.95 -39.23 -0.39 -0.37 16 26 C 0.01 0.06 5.31 -38.40 -0.20 -0.14 16 27 C -0.18 -1.81 10.90 -38.91 -0.42 -2.23 16 28 C -0.23 -2.24 10.87 -39.90 -0.43 -2.67 16 29 C -0.01 -0.14 12.06 29.63 0.36 0.21 16 30 O -0.13 -1.73 7.84 -20.14 -0.16 -1.89 16 31 H 0.05 0.68 7.98 -51.93 -0.41 0.27 16 32 H 0.06 0.94 6.76 -51.93 -0.35 0.59 16 33 H 0.09 1.38 7.40 -51.93 -0.38 1.00 16 34 H 0.35 5.68 7.45 -39.29 -0.29 5.38 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 37 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.08 0.80 7.77 -51.92 -0.40 0.40 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.48 7.20 -51.93 -0.37 0.11 16 43 H 0.14 0.77 6.84 -52.49 -0.36 0.41 16 44 H 0.15 0.65 8.06 -52.49 -0.42 0.22 16 45 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 46 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 47 H 0.20 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 389.73 15.07 5.87 5.87 Total: -1.00 -34.64 389.73 -8.61 -43.25 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -6.62 Total: 14.25 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -2.24 Total: 2.04 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.31 Total: -55.54 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.29 Total: -25.84 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.64 -8.61 -43.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278212097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.360 kcal (2) G-P(sol) polarization free energy of solvation -34.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds