Wall clock time and date at job start Wed Apr 1 2020 04:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.86944 * 2 1 4 4 C 1.54330 * 109.88101 * 238.99085 * 2 1 3 5 5 H 1.08990 * 110.71894 * 144.23488 * 4 2 1 6 6 N 1.46903 * 110.72041 * 21.13379 * 4 2 1 7 7 C 1.46898 * 110.99877 * 155.00369 * 6 4 2 8 8 C 1.50693 * 109.47165 * 180.02562 * 7 6 4 9 9 O 1.21296 * 119.99944 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00195 * 180.02562 * 8 7 6 11 11 C 1.37098 * 120.00446 * 179.97438 * 10 8 7 12 12 H 1.08003 * 119.99558 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00493 * 179.97438 * 11 10 8 14 14 N 1.31418 * 119.99619 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00252 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46714 * 270.00030 * 15 13 11 17 17 H 1.48498 * 109.46953 * 29.99959 * 15 13 11 18 18 H 1.48494 * 109.47047 * 149.99999 * 15 13 11 19 19 C 1.55162 * 102.93720 * 262.77170 * 4 2 1 20 20 C 1.54906 * 101.58376 * 324.50090 * 19 4 2 21 21 N 1.47017 * 109.88376 * 121.17947 * 2 1 3 22 22 C 1.34770 * 125.64803 * 300.43991 * 21 2 1 23 23 O 1.21779 * 120.00219 * 0.02562 * 22 21 2 24 24 C 1.41553 * 120.00047 * 179.97438 * 22 21 2 25 25 C 1.35621 * 120.00073 * 186.39168 * 24 22 21 26 26 C 1.41607 * 120.00200 * 9.03091 * 25 24 22 27 27 C 1.37949 * 126.10548 * 220.50438 * 26 25 24 28 28 C 1.40315 * 106.52719 * 179.97438 * 27 26 25 29 29 C 1.35150 * 107.20935 * 0.02562 * 28 27 26 30 30 O 1.34023 * 109.03210 * 359.75423 * 29 28 27 31 31 H 1.09002 * 109.46978 * 181.01124 * 1 2 3 32 32 H 1.08996 * 109.46937 * 301.01382 * 1 2 3 33 33 H 1.08994 * 109.47167 * 61.01298 * 1 2 3 34 34 H 1.00901 * 110.99754 * 278.95522 * 6 4 2 35 35 H 1.08997 * 109.47086 * 59.99585 * 7 6 4 36 36 H 1.08999 * 109.47000 * 300.00220 * 7 6 4 37 37 H 0.97000 * 119.99862 * 359.97438 * 10 8 7 38 38 H 0.96997 * 119.99448 * 180.02562 * 14 13 11 39 39 H 1.09008 * 111.00266 * 82.57675 * 19 4 2 40 40 H 1.08998 * 111.00084 * 206.41764 * 19 4 2 41 41 H 1.09002 * 110.36240 * 278.17109 * 20 19 4 42 42 H 1.09000 * 110.46112 * 155.89831 * 20 19 4 43 43 H 1.07994 * 120.00100 * 6.39947 * 24 22 21 44 44 H 1.08001 * 120.00162 * 189.02581 * 25 24 22 45 45 H 1.08002 * 126.73681 * 359.97438 * 27 26 25 46 46 H 1.08007 * 126.39427 * 179.97438 * 28 27 26 47 47 H 1.07998 * 125.48494 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 -1.2439 5 1 2.9639 -0.2789 -1.6205 6 7 1.0264 -0.7994 -2.2916 7 6 1.6355 -0.9453 -3.6204 8 6 0.5523 -0.9940 -4.6668 9 8 -0.6126 -0.9154 -4.3380 10 7 0.8777 -1.1260 -5.9680 11 6 -0.1078 -1.1708 -6.9201 12 1 -1.1450 -1.1008 -6.6273 13 6 0.2278 -1.3063 -8.2616 14 7 1.4899 -1.3920 -8.6178 15 14 -1.1150 -1.3666 -9.5588 16 1 -1.5298 -2.7759 -9.7766 17 1 -2.2826 -0.5722 -9.0999 18 1 -0.5999 -0.8000 -10.8311 19 6 2.3520 -2.1685 -0.6956 20 6 2.8569 -1.8508 0.7340 21 7 2.0301 -0.7158 1.1828 22 6 1.7755 -0.3880 2.4650 23 8 1.0757 0.5755 2.7198 24 6 2.3205 -1.1645 3.5156 25 6 1.9614 -0.9156 4.7996 26 6 0.9047 -0.0148 5.0773 27 6 0.8774 0.9178 6.0935 28 6 -0.3534 1.5838 5.9910 29 6 -1.0137 1.0447 4.9423 30 8 -0.2533 0.0879 4.3921 31 1 -0.3633 -1.0275 0.0181 32 1 -0.3633 0.5295 0.8807 33 1 -0.3633 0.4980 -0.8989 34 1 0.3657 -1.5408 -2.1133 35 1 2.2161 -1.8672 -3.6547 36 1 2.2904 -0.0961 -3.8151 37 1 1.8093 -1.1892 -6.2310 38 1 1.7241 -1.4862 -9.5544 39 1 1.4452 -2.7727 -0.6645 40 1 3.1270 -2.6600 -1.2836 41 1 3.9092 -1.5677 0.7104 42 1 2.7104 -2.7094 1.3894 43 1 3.0223 -1.9550 3.2948 44 1 2.4814 -1.4044 5.6102 45 1 1.6514 1.0996 6.8244 46 1 -0.7073 2.3784 6.6313 47 1 -1.9946 1.3400 4.6002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278212097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:46 Heat of formation + Delta-G solvation = -36.255839 kcal Electronic energy + Delta-G solvation = -29956.401994 eV Core-core repulsion = 25720.149948 eV Total energy + Delta-G solvation = -4236.252046 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.29500 -41.41020 -40.15019 -39.04670 -36.18229 -35.52697 -35.04770 -33.73067 -33.26635 -32.24434 -31.72676 -29.57181 -28.17198 -26.50964 -25.84613 -24.85194 -23.53668 -22.54103 -21.88469 -21.15261 -20.68488 -19.92510 -19.68666 -18.85670 -17.75278 -17.60146 -17.18905 -16.84406 -16.74396 -16.38492 -16.29541 -15.90595 -15.53976 -15.25157 -15.08804 -14.89113 -14.39411 -14.24433 -14.03848 -13.87129 -13.69900 -13.60188 -13.49490 -13.44550 -13.34011 -13.18638 -13.00584 -12.96937 -12.71127 -12.44227 -12.40198 -12.12789 -11.83181 -11.68224 -11.49983 -11.04975 -10.86762 -10.64193 -10.33251 -10.00285 -9.61119 -9.26498 -8.87901 -8.46269 -5.94467 -0.35205 1.20272 1.37831 1.41843 1.54269 1.77891 2.04232 2.07190 2.29957 2.32655 2.53971 2.93692 3.21334 3.41503 3.54979 3.70310 3.88351 4.00530 4.08579 4.15677 4.17920 4.22562 4.33088 4.36759 4.46863 4.50471 4.53480 4.62152 4.68468 4.73059 4.75211 4.85274 4.88335 5.01131 5.07528 5.09237 5.10618 5.16190 5.34750 5.39240 5.41741 5.52072 5.70374 5.90666 6.11948 6.31609 6.36484 6.60849 6.61819 7.13898 7.25619 7.57960 8.13758 8.70967 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026279 B = 0.001825 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.231312 B =15338.670225 C =16134.205505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.147 3.853 3 H 0.060 0.940 4 C 0.086 3.914 5 H 0.109 0.891 6 N -0.671 5.671 7 C 0.068 3.932 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.573 5.573 11 C -0.333 4.333 12 H 0.077 0.923 13 C -0.012 4.012 14 N -0.919 5.919 15 Si 0.991 3.009 16 H -0.270 1.270 17 H -0.276 1.276 18 H -0.271 1.271 19 C -0.158 4.158 20 C 0.102 3.898 21 N -0.613 5.613 22 C 0.541 3.459 23 O -0.566 6.566 24 C -0.211 4.211 25 C 0.009 3.991 26 C -0.018 4.018 27 C -0.189 4.189 28 C -0.233 4.233 29 C -0.039 4.039 30 O -0.161 6.161 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.064 0.936 34 H 0.347 0.653 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.070 0.930 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.174 0.826 44 H 0.199 0.801 45 H 0.172 0.828 46 H 0.166 0.834 47 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.246 -2.601 28.110 29.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.043 3.957 3 H 0.078 0.922 4 C -0.025 4.025 5 H 0.127 0.873 6 N -0.302 5.302 7 C -0.064 4.064 8 C 0.224 3.776 9 O -0.512 6.512 10 N -0.210 5.210 11 C -0.463 4.463 12 H 0.095 0.905 13 C -0.212 4.212 14 N -0.560 5.560 15 Si 0.815 3.185 16 H -0.196 1.196 17 H -0.200 1.200 18 H -0.195 1.195 19 C -0.198 4.198 20 C -0.020 4.020 21 N -0.347 5.347 22 C 0.335 3.665 23 O -0.448 6.448 24 C -0.231 4.231 25 C -0.010 4.010 26 C -0.068 4.068 27 C -0.208 4.208 28 C -0.252 4.252 29 C -0.109 4.109 30 O -0.056 6.056 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.167 0.833 35 H 0.093 0.907 36 H 0.123 0.877 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.127 0.873 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.191 0.809 44 H 0.216 0.784 45 H 0.190 0.810 46 H 0.184 0.816 47 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 8.065 -1.547 27.997 29.176 hybrid contribution -0.282 -0.453 -1.061 1.188 sum 7.783 -2.000 26.936 28.109 Atomic orbital electron populations 1.21704 0.95512 1.00977 1.01053 1.21304 0.94350 0.95392 0.84675 0.92220 1.22624 0.94208 0.95831 0.89829 0.87277 1.59959 1.16363 1.53928 0.99974 1.21557 0.94148 1.03111 0.87612 1.20952 0.90664 0.82033 0.83920 1.90506 1.22406 1.56574 1.81690 1.41916 1.09516 1.64507 1.05083 1.19638 0.89985 1.49288 0.87375 0.90526 1.26001 0.99399 0.96366 0.99454 1.69665 1.17309 1.49892 1.19096 0.84956 0.77669 0.78684 0.77203 1.19576 1.20047 1.19539 1.23526 1.03015 0.96776 0.96454 1.22513 0.95451 0.88834 0.95189 1.48598 1.50698 1.30803 1.04570 1.17451 0.80800 0.85578 0.82707 1.90857 1.39663 1.30989 1.83289 1.22455 1.05596 1.02850 0.92201 1.21229 0.90372 0.91291 0.98128 1.20294 0.89393 1.03142 0.93982 1.22534 0.99507 0.98334 1.00445 1.21986 0.96200 1.05152 1.01842 1.24696 0.98674 0.91445 0.96084 1.84257 1.25635 1.47451 1.48212 0.93740 0.94207 0.91731 0.83294 0.90654 0.87655 0.76870 0.91321 0.91159 0.87333 0.88721 0.88239 0.80875 0.78398 0.81025 0.81623 0.76965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 8.26 71.98 0.59 -3.53 16 2 C 0.15 3.75 3.48 45.35 0.16 3.91 16 3 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 4 C 0.09 1.85 3.15 46.11 0.15 2.00 16 5 H 0.11 2.04 7.82 -2.39 -0.02 2.02 16 6 N -0.67 -20.01 4.39 -489.45 -2.15 -22.16 16 7 C 0.07 2.15 6.03 85.56 0.52 2.67 16 8 C 0.44 20.32 7.82 87.65 0.69 21.01 16 9 O -0.63 -34.54 15.78 -3.08 -0.05 -34.59 16 10 N -0.57 -28.90 5.29 -306.99 -1.62 -30.53 16 11 C -0.33 -18.87 9.68 84.04 0.81 -18.05 16 12 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 13 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 14 N -0.92 -49.06 13.05 21.66 0.28 -48.77 16 15 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 16 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 17 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 19 C -0.16 -2.42 6.67 31.99 0.21 -2.20 16 20 C 0.10 1.27 6.45 86.85 0.56 1.83 16 21 N -0.61 -13.00 3.08 -798.59 -2.46 -15.46 16 22 C 0.54 13.15 7.19 85.06 0.61 13.76 16 23 O -0.57 -18.48 11.33 19.12 0.22 -18.27 16 24 C -0.21 -3.22 9.31 22.48 0.21 -3.02 16 25 C 0.01 0.13 9.95 22.50 0.22 0.35 16 26 C -0.02 -0.40 5.31 23.03 0.12 -0.28 16 27 C -0.19 -3.59 10.90 22.71 0.25 -3.34 16 28 C -0.23 -4.55 10.87 22.06 0.24 -4.31 16 29 C -0.04 -0.88 12.06 67.11 0.81 -0.07 16 30 O -0.16 -4.41 7.84 17.49 0.14 -4.27 16 31 H 0.04 1.34 7.98 -2.39 -0.02 1.32 16 32 H 0.04 1.36 6.76 -2.39 -0.02 1.34 16 33 H 0.06 2.23 7.40 -2.39 -0.02 2.21 16 34 H 0.35 11.18 7.45 -89.69 -0.67 10.51 16 35 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.11 3.00 8.08 -2.39 -0.02 2.98 16 37 H 0.40 18.84 7.90 -92.71 -0.73 18.11 16 38 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 39 H 0.07 1.25 7.77 -2.38 -0.02 1.23 16 40 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.10 0.82 7.20 -2.39 -0.02 0.80 16 43 H 0.17 1.18 6.84 -2.91 -0.02 1.16 16 44 H 0.20 0.85 8.06 -2.91 -0.02 0.82 16 45 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 46 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 47 H 0.21 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -79.74 389.73 2.61 -77.13 By element: Atomic # 1 Polarization: 41.78 SS G_CDS: -0.39 Total: 41.39 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 6.62 Total: 10.53 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -5.95 Total: -116.92 kcal Atomic # 8 Polarization: -57.43 SS G_CDS: 0.31 Total: -57.12 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -79.74 2.61 -77.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278212097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.869 kcal (2) G-P(sol) polarization free energy of solvation -79.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds