Wall clock time and date at job start Wed Apr 1 2020 04:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.87765 * 2 1 4 4 C 1.54332 * 110.01063 * 238.89813 * 2 1 3 5 5 H 1.09001 * 110.71392 * 144.34164 * 4 2 1 6 6 N 1.46896 * 110.72051 * 21.07034 * 4 2 1 7 7 C 1.46895 * 111.00351 * 154.99576 * 6 4 2 8 8 C 1.50697 * 109.47473 * 179.97438 * 7 6 4 9 9 O 1.21293 * 119.99984 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00220 * 180.02562 * 8 7 6 11 11 C 1.37095 * 120.00448 * 180.02562 * 10 8 7 12 12 H 1.07999 * 119.99882 * 0.02562 * 11 10 8 13 13 C 1.38950 * 120.00495 * 180.02562 * 11 10 8 14 14 N 1.31417 * 119.99575 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00334 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46893 * 89.99497 * 15 13 11 17 17 H 1.48491 * 109.47182 * 209.99831 * 15 13 11 18 18 H 1.48504 * 109.46760 * 329.99931 * 15 13 11 19 19 C 1.55153 * 102.94225 * 262.70475 * 4 2 1 20 20 C 1.55128 * 101.48776 * 324.33350 * 19 4 2 21 21 N 1.47025 * 109.87845 * 121.01765 * 2 1 3 22 22 C 1.34775 * 125.65021 * 300.58834 * 21 2 1 23 23 O 1.21585 * 120.00389 * 186.82501 * 22 21 2 24 24 C 1.47544 * 119.99547 * 7.09869 * 22 21 2 25 25 C 1.39704 * 120.19397 * 325.26497 * 24 22 21 26 26 C 1.37785 * 119.90735 * 180.02562 * 25 24 22 27 27 C 1.38546 * 120.30099 * 359.97438 * 26 25 24 28 28 C 1.38050 * 120.38958 * 0.02562 * 27 26 25 29 29 C 1.38708 * 120.08735 * 359.71739 * 28 27 26 30 30 O 1.35648 * 120.15473 * 180.27794 * 29 28 27 31 31 H 1.08994 * 109.47135 * 270.25653 * 1 2 3 32 32 H 1.09007 * 109.46516 * 30.25683 * 1 2 3 33 33 H 1.09001 * 109.46992 * 150.25066 * 1 2 3 34 34 H 1.00897 * 111.00448 * 278.95665 * 6 4 2 35 35 H 1.08998 * 109.47127 * 300.00349 * 7 6 4 36 36 H 1.09003 * 109.46564 * 59.99886 * 7 6 4 37 37 H 0.97003 * 119.99938 * 0.02562 * 10 8 7 38 38 H 0.96999 * 119.99318 * 180.02562 * 14 13 11 39 39 H 1.09004 * 111.00225 * 82.57411 * 19 4 2 40 40 H 1.09002 * 111.00134 * 206.38271 * 19 4 2 41 41 H 1.08997 * 110.49788 * 278.45337 * 20 19 4 42 42 H 1.09004 * 110.34077 * 156.05900 * 20 19 4 43 43 H 1.08001 * 120.04363 * 0.02562 * 25 24 22 44 44 H 1.08002 * 119.84664 * 180.02562 * 26 25 24 45 45 H 1.07995 * 119.80282 * 179.97438 * 27 26 25 46 46 H 1.08000 * 119.95686 * 180.02562 * 28 27 26 47 47 H 0.96703 * 114.00499 * 270.27658 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7491 -1.2417 5 1 2.9684 -0.2809 -1.6162 6 7 1.0313 -0.8050 -2.2907 7 6 1.6424 -0.9522 -3.6183 8 6 0.5606 -1.0064 -4.6661 9 8 -0.6049 -0.9296 -4.3391 10 7 0.8881 -1.1404 -5.9666 11 6 -0.0959 -1.1892 -6.9198 12 1 -1.1336 -1.1200 -6.6287 13 6 0.2417 -1.3278 -8.2606 14 7 1.5044 -1.4116 -8.6148 15 14 -1.0992 -1.3951 -9.5593 16 1 -1.3986 -0.0200 -10.0333 17 1 -0.6397 -2.2237 -10.7027 18 1 -2.3253 -1.9950 -8.9743 19 6 2.3574 -2.1681 -0.6902 20 6 2.8643 -1.8433 0.7395 21 7 2.0299 -0.7125 1.1849 22 6 1.7729 -0.3828 2.4662 23 8 2.3387 -0.9676 3.3697 24 6 0.8004 0.6836 2.7727 25 6 0.6837 1.7915 1.9297 26 6 -0.2261 2.7842 2.2218 27 6 -1.0271 2.6889 3.3482 28 6 -0.9220 1.5995 4.1897 29 6 -0.0153 0.5883 3.9082 30 8 0.0850 -0.4854 4.7310 31 1 -0.3633 0.0046 1.0276 32 1 -0.3632 0.8878 -0.5179 33 1 -0.3633 -0.8922 -0.5099 34 1 0.3717 -1.5474 -2.1119 35 1 2.2957 -0.1019 -3.8138 36 1 2.2250 -1.8729 -3.6500 37 1 1.8202 -1.2022 -6.2281 38 1 1.7401 -1.5079 -9.5508 39 1 1.4520 -2.7742 -0.6591 40 1 3.1339 -2.6593 -1.2767 41 1 3.9147 -1.5534 0.7154 42 1 2.7217 -2.7017 1.3961 43 1 1.3058 1.8698 1.0503 44 1 -0.3158 3.6401 1.5692 45 1 -1.7372 3.4718 3.5697 46 1 -1.5502 1.5322 5.0657 47 1 0.7270 -0.3748 5.4457 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283846053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:56 Heat of formation + Delta-G solvation = -57.559381 kcal Electronic energy + Delta-G solvation = -30485.251915 eV Core-core repulsion = 26248.076079 eV Total energy + Delta-G solvation = -4237.175837 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.14014 -39.49851 -38.36404 -37.72406 -36.91868 -34.75674 -33.82897 -32.67546 -31.29831 -30.62239 -30.29136 -29.95059 -26.77183 -25.30564 -24.66222 -23.85074 -22.97117 -22.27928 -20.73846 -19.78470 -19.38795 -18.36032 -17.96669 -17.50182 -16.72086 -16.22026 -16.10380 -15.86303 -15.70090 -15.19307 -14.80304 -14.68498 -14.54767 -14.15732 -14.01624 -13.75049 -13.69232 -13.32143 -12.99973 -12.82754 -12.71870 -12.42449 -12.30900 -12.19967 -12.08451 -11.98854 -11.56606 -11.54595 -11.45213 -11.07370 -11.05099 -10.92267 -10.72617 -10.42124 -10.25216 -10.01700 -9.54381 -9.21784 -9.00528 -8.79766 -8.52703 -8.13926 -7.99865 -6.45275 -3.86124 0.57907 0.95283 2.54359 2.73843 3.15479 3.24533 3.30128 3.37830 3.85686 3.90678 3.92238 4.14470 4.24129 4.36891 4.50702 4.60595 4.67531 4.88179 4.91248 4.97932 5.04683 5.11398 5.15354 5.22835 5.26984 5.36461 5.47705 5.52168 5.53669 5.62983 5.72880 5.78733 5.84827 5.91344 5.91617 5.94060 6.02825 6.11272 6.20040 6.21760 6.40456 6.42589 7.09049 7.30412 7.40605 7.51269 7.52086 7.95626 8.02429 8.57075 9.14356 9.50273 10.01314 10.72369 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018991 B = 0.002145 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.000768 B =13052.227149 C =14012.855428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.131 3.869 3 H 0.083 0.917 4 C 0.082 3.918 5 H 0.096 0.904 6 N -0.653 5.653 7 C 0.050 3.950 8 C 0.440 3.560 9 O -0.583 6.583 10 N -0.563 5.563 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.901 5.901 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.270 1.270 19 C -0.167 4.167 20 C 0.112 3.888 21 N -0.610 5.610 22 C 0.584 3.416 23 O -0.537 6.537 24 C -0.158 4.158 25 C -0.072 4.072 26 C -0.137 4.137 27 C -0.080 4.080 28 C -0.158 4.158 29 C 0.159 3.841 30 O -0.488 6.488 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.355 0.645 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.143 0.857 44 H 0.132 0.868 45 H 0.130 0.870 46 H 0.134 0.866 47 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.216 6.131 22.536 23.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.027 3.973 3 H 0.100 0.900 4 C -0.030 4.030 5 H 0.114 0.886 6 N -0.286 5.286 7 C -0.083 4.083 8 C 0.225 3.775 9 O -0.467 6.467 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.206 4.206 20 C -0.011 4.011 21 N -0.344 5.344 22 C 0.373 3.627 23 O -0.414 6.414 24 C -0.161 4.161 25 C -0.091 4.091 26 C -0.155 4.155 27 C -0.098 4.098 28 C -0.176 4.176 29 C 0.113 3.887 30 O -0.300 6.300 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.176 0.824 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.160 0.840 44 H 0.150 0.850 45 H 0.148 0.852 46 H 0.151 0.849 47 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 2.305 6.284 22.682 23.649 hybrid contribution 0.636 -0.820 -0.697 1.250 sum 2.941 5.463 21.985 22.844 Atomic orbital electron populations 1.22231 0.93236 1.04215 1.01545 1.21914 0.96015 0.95422 0.83916 0.89972 1.22613 0.95017 0.94092 0.91247 0.88623 1.60094 1.15045 1.53754 0.99685 1.21718 0.96481 1.00933 0.89120 1.19772 0.89660 0.84570 0.83465 1.90532 1.19782 1.55408 1.80993 1.41861 1.09822 1.63655 1.04615 1.19695 0.90292 1.47030 0.85870 0.87915 1.25267 0.97160 0.97267 0.98245 1.69613 1.16166 1.50063 1.18435 0.85857 0.80482 0.78279 0.79681 1.20368 1.20936 1.19416 1.23634 1.02769 0.98598 0.95628 1.22187 0.94502 0.89363 0.95062 1.48482 1.50218 1.30786 1.04929 1.17652 0.81285 0.82611 0.81103 1.90752 1.51480 1.54271 1.44930 1.20241 0.99914 0.97218 0.98767 1.21769 0.97256 0.92108 0.97919 1.21151 0.96806 0.99590 0.97958 1.21234 0.97792 0.97133 0.93649 1.21403 1.00780 0.93667 1.01770 1.18408 0.93737 0.86509 0.90020 1.84692 1.64532 1.36769 1.43972 0.92453 0.90675 0.91473 0.82367 0.89460 0.93666 0.77466 0.91853 0.90111 0.89472 0.91146 0.90383 0.83976 0.84964 0.85180 0.84858 0.74434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 7.45 37.16 0.28 -1.53 16 2 C 0.13 1.38 2.74 -66.95 -0.18 1.20 16 3 H 0.08 0.77 5.72 -51.93 -0.30 0.47 16 4 C 0.08 0.88 3.10 -65.88 -0.20 0.67 16 5 H 0.10 0.93 7.83 -51.93 -0.41 0.52 16 6 N -0.65 -9.20 4.78 -106.06 -0.51 -9.70 16 7 C 0.05 0.79 6.03 -4.98 -0.03 0.76 16 8 C 0.44 9.83 7.82 -10.99 -0.09 9.75 16 9 O -0.58 -15.14 15.78 5.55 0.09 -15.05 16 10 N -0.56 -13.75 5.29 -10.97 -0.06 -13.81 16 11 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 12 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.06 13.05 55.50 0.72 -23.33 16 15 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 19 C -0.17 -1.62 6.68 -24.47 -0.16 -1.78 16 20 C 0.11 1.15 6.89 -2.41 -0.02 1.14 16 21 N -0.61 -7.04 3.08 -164.08 -0.51 -7.55 16 22 C 0.58 7.74 7.22 -12.47 -0.09 7.65 16 23 O -0.54 -8.46 16.24 -12.61 -0.20 -8.66 16 24 C -0.16 -1.80 4.12 -104.84 -0.43 -2.23 16 25 C -0.07 -0.68 6.77 -39.20 -0.27 -0.94 16 26 C -0.14 -1.08 10.02 -39.63 -0.40 -1.48 16 27 C -0.08 -0.59 10.03 -39.54 -0.40 -0.99 16 28 C -0.16 -1.35 9.98 -39.48 -0.39 -1.74 16 29 C 0.16 1.73 6.68 -38.69 -0.26 1.47 16 30 O -0.49 -5.45 12.13 -36.54 -0.44 -5.89 16 31 H 0.06 0.69 5.00 -51.93 -0.26 0.44 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.88 6.23 -51.93 -0.32 0.55 16 34 H 0.35 5.37 6.62 -39.29 -0.26 5.11 16 35 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 38 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 39 H 0.08 0.85 7.77 -51.93 -0.40 0.45 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 43 H 0.14 1.21 4.54 -52.49 -0.24 0.97 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 46 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.40 2.99 9.06 45.56 0.41 3.40 16 LS Contribution 381.02 15.07 5.74 5.74 Total: -1.00 -33.69 381.02 -8.48 -42.17 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -5.41 Total: 16.28 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -2.88 Total: 4.12 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.35 Total: -54.39 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.56 Total: -29.60 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.69 -8.48 -42.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283846053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.394 kcal (2) G-P(sol) polarization free energy of solvation -33.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds