Wall clock time and date at job start Wed Apr 1 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.49060 * 2 1 4 4 C 1.52777 * 109.56444 * 240.06533 * 2 1 3 5 5 N 1.47079 * 108.76730 * 186.36975 * 4 2 1 6 6 C 1.34781 * 120.88164 * 231.12638 * 5 4 2 7 7 O 1.21367 * 119.99878 * 180.93579 * 6 5 4 8 8 C 1.49319 * 119.99863 * 0.92751 * 6 5 4 9 9 O 1.21387 * 119.99868 * 353.59798 * 8 6 5 10 10 N 1.34774 * 119.99831 * 173.59723 * 8 6 5 11 11 C 1.39736 * 120.00133 * 184.66654 * 10 8 6 12 12 C 1.39002 * 120.00943 * 144.76276 * 11 10 8 13 13 C 1.37964 * 119.99176 * 180.27643 * 12 11 10 14 14 C 1.38942 * 120.00744 * 359.44859 * 13 12 11 15 15 O 1.35755 * 119.99266 * 180.27585 * 14 13 12 16 16 C 1.34799 * 117.00409 * 354.49137 * 15 14 13 17 17 H 1.08007 * 119.99757 * 5.09231 * 16 15 14 18 18 C 1.38647 * 120.00593 * 185.08577 * 16 15 14 19 19 N 1.31557 * 120.00262 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99589 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47296 * 89.99990 * 20 18 16 22 22 H 1.48507 * 109.46940 * 209.99915 * 20 18 16 23 23 H 1.48496 * 109.47459 * 330.00008 * 20 18 16 24 24 C 1.38933 * 120.01370 * 0.29858 * 14 13 12 25 25 C 1.37969 * 120.00887 * 359.97438 * 24 14 13 26 26 C 1.47080 * 118.24066 * 50.84603 * 5 4 2 27 27 H 1.08997 * 109.63563 * 189.38262 * 26 5 4 28 28 C 1.53002 * 109.62582 * 68.99492 * 26 5 4 29 29 C 1.53244 * 108.52268 * 309.09563 * 26 5 4 30 30 N 1.46899 * 109.49439 * 120.05122 * 2 1 3 31 31 H 1.09001 * 109.47014 * 299.94814 * 1 2 3 32 32 H 1.08996 * 109.47295 * 59.94684 * 1 2 3 33 33 H 1.09001 * 109.47240 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.55926 * 66.55415 * 4 2 1 35 35 H 1.09001 * 109.46009 * 306.12189 * 4 2 1 36 36 H 0.97003 * 119.99810 * 4.65895 * 10 8 6 37 37 H 1.07995 * 120.00502 * 0.02562 * 12 11 10 38 38 H 1.08002 * 119.99855 * 179.73000 * 13 12 11 39 39 H 0.97004 * 119.99913 * 179.97438 * 19 18 16 40 40 H 1.07995 * 119.99633 * 179.97438 * 24 14 13 41 41 H 1.07998 * 120.00464 * 180.02562 * 25 24 14 42 42 H 1.09002 * 109.46939 * 60.00246 * 28 26 5 43 43 H 1.09000 * 109.47374 * 180.02562 * 28 26 5 44 44 H 1.09004 * 109.47385 * 300.00498 * 28 26 5 45 45 H 1.08999 * 109.49448 * 173.78425 * 29 26 5 46 46 H 1.08998 * 109.49095 * 293.87079 * 29 26 5 47 47 H 1.00903 * 111.00057 * 58.91302 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0416 -0.7184 -1.2475 5 7 3.5041 -0.8435 -1.1552 6 6 4.2977 -0.4496 -2.1709 7 8 5.5016 -0.5758 -2.0845 8 6 3.6954 0.1420 -3.4026 9 8 2.4894 0.1619 -3.5392 10 7 4.4909 0.6537 -4.3627 11 6 3.9271 1.2944 -5.4692 12 6 4.5664 2.3892 -6.0390 13 6 4.0066 3.0249 -7.1280 14 6 2.8096 2.5639 -7.6621 15 8 2.2619 3.1863 -8.7371 16 6 2.8671 4.3114 -9.1671 17 1 3.7927 4.6339 -8.7133 18 6 2.3017 5.0546 -10.1919 19 7 2.8922 6.1529 -10.6111 20 14 0.7007 4.4972 -10.9763 21 1 -0.4441 5.0967 -10.2447 22 1 0.6657 4.9352 -12.3949 23 1 0.6076 3.0165 -10.9130 24 6 2.1730 1.4664 -7.0960 25 6 2.7295 0.8336 -6.0036 26 6 4.0782 -1.4040 0.0775 27 1 5.1611 -1.2804 0.0664 28 6 3.7317 -2.8910 0.1758 29 6 3.4867 -0.6532 1.2753 30 7 2.0202 -0.6935 1.1986 31 1 -0.3633 0.5130 0.8905 32 1 -0.3634 0.5146 -0.8895 33 1 -0.3634 -1.0277 -0.0005 34 1 1.7787 -0.1417 -2.1343 35 1 1.5923 -1.7098 -1.3056 36 1 5.4548 0.5774 -4.2855 37 1 5.4992 2.7446 -5.6269 38 1 4.5010 3.8783 -7.5681 39 1 2.4968 6.6727 -11.3284 40 1 1.2425 1.1086 -7.5112 41 1 2.2348 -0.0198 -5.5639 42 1 4.1415 -3.4174 -0.6862 43 1 4.1579 -3.3037 1.0902 44 1 2.6485 -3.0113 0.1937 45 1 3.8157 -1.1270 2.2001 46 1 3.8235 0.3833 1.2572 47 1 1.6824 -1.6437 1.2302 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328694771.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:45 Heat of formation + Delta-G solvation = -35.189360 kcal Electronic energy + Delta-G solvation = -30397.784463 eV Core-core repulsion = 26161.578663 eV Total energy + Delta-G solvation = -4236.205800 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.44688 -39.94444 -38.94903 -38.25328 -36.88905 -34.69321 -34.17897 -33.26594 -32.41024 -30.43331 -29.81683 -28.62413 -26.75670 -26.13853 -25.44545 -24.52131 -22.60409 -22.21568 -21.45293 -20.53036 -19.72376 -18.30258 -17.99603 -17.49687 -17.19692 -16.51358 -16.26450 -15.79859 -15.65970 -15.49147 -14.90526 -14.71685 -14.52643 -14.29486 -13.93672 -13.91940 -13.83445 -13.72871 -13.40285 -12.96459 -12.75857 -12.65137 -12.44884 -12.37452 -12.26292 -12.04744 -11.85081 -11.77505 -11.67767 -11.51297 -11.22202 -11.19557 -10.98826 -10.85747 -10.25095 -9.91548 -9.85239 -9.46961 -9.13136 -8.85681 -8.48941 -8.39803 -7.21345 -6.49083 -4.14991 1.09429 1.95842 1.99742 2.16139 3.03383 3.18480 3.22326 3.25155 3.36509 3.77111 4.11441 4.18068 4.35617 4.38841 4.47581 4.58213 4.70784 4.74885 4.78036 4.94970 5.03119 5.08111 5.16037 5.27937 5.38993 5.39462 5.41682 5.51112 5.51280 5.60628 5.68325 5.74904 5.87924 5.94875 5.96881 5.98436 6.14633 6.50999 6.56171 6.62615 6.67841 6.80418 6.92000 6.95595 7.11521 7.24722 7.44733 7.56760 7.69294 7.89547 7.97357 8.85561 9.46375 10.58037 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020688 B = 0.002173 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.143923 B =12879.412903 C =13616.280447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.071 3.929 3 H 0.084 0.916 4 C 0.017 3.983 5 N -0.577 5.577 6 C 0.513 3.487 7 O -0.524 6.524 8 C 0.502 3.498 9 O -0.500 6.500 10 N -0.620 5.620 11 C 0.028 3.972 12 C -0.081 4.081 13 C -0.207 4.207 14 C 0.157 3.843 15 O -0.211 6.211 16 C -0.391 4.391 17 H 0.108 0.892 18 C 0.064 3.936 19 N -0.875 5.875 20 Si 0.906 3.094 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.259 1.259 24 C -0.179 4.179 25 C -0.065 4.065 26 C 0.091 3.909 27 H 0.105 0.895 28 C -0.160 4.160 29 C 0.052 3.948 30 N -0.681 5.681 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.163 0.837 35 H 0.066 0.934 36 H 0.416 0.584 37 H 0.116 0.884 38 H 0.140 0.860 39 H 0.281 0.719 40 H 0.123 0.877 41 H 0.131 0.869 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.022 -15.591 21.999 26.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.040 4.040 3 H 0.103 0.897 4 C -0.105 4.105 5 N -0.310 5.310 6 C 0.296 3.704 7 O -0.400 6.400 8 C 0.284 3.716 9 O -0.378 6.378 10 N -0.264 5.264 11 C -0.064 4.064 12 C -0.101 4.101 13 C -0.227 4.227 14 C 0.104 3.896 15 O -0.116 6.116 16 C -0.466 4.466 17 H 0.125 0.875 18 C -0.140 4.140 19 N -0.513 5.513 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.183 1.183 24 C -0.199 4.199 25 C -0.085 4.085 26 C -0.013 4.013 27 H 0.123 0.877 28 C -0.218 4.218 29 C -0.078 4.078 30 N -0.311 5.311 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.179 0.821 35 H 0.085 0.915 36 H 0.253 0.747 37 H 0.134 0.866 38 H 0.157 0.843 39 H 0.091 0.909 40 H 0.141 0.859 41 H 0.149 0.851 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.108 0.892 46 H 0.097 0.903 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.499 -14.938 22.076 26.660 hybrid contribution 0.282 -0.745 -0.954 1.243 sum -0.217 -15.683 21.122 26.309 Atomic orbital electron populations 1.21722 0.93099 1.02257 1.02867 1.21875 0.96134 0.98684 0.87292 0.89747 1.23937 0.78041 1.03424 1.05097 1.48036 1.07907 1.59928 1.15136 1.20036 0.86639 0.79347 0.84423 1.90754 1.13961 1.54761 1.80551 1.20051 0.87035 0.80244 0.84223 1.90337 1.13843 1.56544 1.77062 1.42898 1.10725 1.53681 1.19100 1.17300 0.98717 0.98220 0.92200 1.20573 0.99599 0.93294 0.96628 1.21110 0.97937 1.03996 0.99616 1.19196 0.91571 0.92084 0.86716 1.83573 1.51519 1.37644 1.38842 1.20778 1.08380 0.98354 1.19135 0.87501 1.24484 0.99097 0.94386 0.95996 1.69644 1.39678 1.14054 1.27896 0.86173 0.82178 0.80393 0.78145 1.19786 1.20720 1.18270 1.20124 1.02178 0.98552 0.99067 1.20714 0.94440 0.99103 0.94195 1.22109 1.00809 0.93683 0.84722 0.87667 1.22074 1.01984 0.94813 1.02902 1.22397 0.87885 1.01176 0.96388 1.60671 1.08741 1.21693 1.40000 0.91471 0.91288 0.92634 0.82069 0.91527 0.74745 0.86558 0.84253 0.90918 0.85906 0.85089 0.91929 0.90860 0.92386 0.89159 0.90280 0.84059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.48 37.16 0.35 -0.65 16 2 C 0.07 0.58 3.15 -67.83 -0.21 0.37 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 4 C 0.02 0.16 5.18 -3.84 -0.02 0.14 16 5 N -0.58 -5.88 2.71 -165.76 -0.45 -6.33 16 6 C 0.51 6.42 7.77 -11.64 -0.09 6.33 16 7 O -0.52 -7.34 15.95 5.48 0.09 -7.26 16 8 C 0.50 6.83 7.64 -11.65 -0.09 6.75 16 9 O -0.50 -7.34 10.48 5.46 0.06 -7.29 16 10 N -0.62 -8.50 5.32 -10.27 -0.05 -8.56 16 11 C 0.03 0.46 6.29 -83.69 -0.53 -0.07 16 12 C -0.08 -1.38 9.96 -39.40 -0.39 -1.77 16 13 C -0.21 -4.21 9.16 -39.42 -0.36 -4.57 16 14 C 0.16 3.49 6.65 -39.06 -0.26 3.23 16 15 O -0.21 -5.39 8.58 0.12 0.00 -5.38 16 16 C -0.39 -10.66 9.94 30.88 0.31 -10.35 16 17 H 0.11 2.95 5.43 -52.48 -0.28 2.67 16 18 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 19 N -0.88 -24.68 13.96 55.48 0.77 -23.90 16 20 Si 0.91 21.15 28.62 -169.99 -4.86 16.28 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 24 C -0.18 -3.47 9.98 -39.42 -0.39 -3.87 16 25 C -0.06 -1.13 8.68 -39.40 -0.34 -1.47 16 26 C 0.09 0.74 3.21 -67.49 -0.22 0.52 16 27 H 0.11 0.96 7.07 -51.93 -0.37 0.60 16 28 C -0.16 -1.02 9.12 37.16 0.34 -0.69 16 29 C 0.05 0.36 6.16 -3.70 -0.02 0.34 16 30 N -0.68 -4.90 6.47 -106.71 -0.69 -5.59 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.16 1.87 3.94 -56.49 -0.22 1.64 16 35 H 0.07 0.58 7.65 -51.93 -0.40 0.18 16 36 H 0.42 4.92 8.30 -40.82 -0.34 4.58 16 37 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.14 2.96 5.63 -52.49 -0.30 2.66 16 39 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.13 2.14 6.25 -52.49 -0.33 1.82 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.34 6.15 -51.93 -0.32 0.03 16 45 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.34 2.09 7.21 -39.29 -0.28 1.80 16 LS Contribution 378.48 15.07 5.70 5.70 Total: -1.00 -29.57 378.48 -7.66 -37.23 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -6.20 Total: 9.20 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -2.03 Total: -4.11 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -0.42 Total: -44.38 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: 0.15 Total: -19.93 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.86 Total: 16.28 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.57 -7.66 -37.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328694771.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.041 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds