Wall clock time and date at job start Wed Apr 1 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.49060 * 2 1 4 4 C 1.52777 * 109.56444 * 240.06533 * 2 1 3 5 5 N 1.47079 * 108.76730 * 186.36975 * 4 2 1 6 6 C 1.34781 * 120.88164 * 231.12638 * 5 4 2 7 7 O 1.21367 * 119.99878 * 180.93579 * 6 5 4 8 8 C 1.49319 * 119.99863 * 0.92751 * 6 5 4 9 9 O 1.21387 * 119.99868 * 353.59798 * 8 6 5 10 10 N 1.34774 * 119.99831 * 173.59723 * 8 6 5 11 11 C 1.39736 * 120.00133 * 184.66654 * 10 8 6 12 12 C 1.39002 * 120.00943 * 144.76276 * 11 10 8 13 13 C 1.37964 * 119.99176 * 180.27643 * 12 11 10 14 14 C 1.38942 * 120.00744 * 359.44859 * 13 12 11 15 15 O 1.35755 * 119.99266 * 180.27585 * 14 13 12 16 16 C 1.34799 * 117.00409 * 354.49137 * 15 14 13 17 17 H 1.08007 * 119.99757 * 5.09231 * 16 15 14 18 18 C 1.38647 * 120.00593 * 185.08577 * 16 15 14 19 19 N 1.31557 * 120.00262 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99589 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47296 * 89.99990 * 20 18 16 22 22 H 1.48507 * 109.46940 * 209.99915 * 20 18 16 23 23 H 1.48496 * 109.47459 * 330.00008 * 20 18 16 24 24 C 1.38933 * 120.01370 * 0.29858 * 14 13 12 25 25 C 1.37969 * 120.00887 * 359.97438 * 24 14 13 26 26 C 1.47080 * 118.24066 * 50.84603 * 5 4 2 27 27 H 1.08997 * 109.63563 * 189.38262 * 26 5 4 28 28 C 1.53002 * 109.62582 * 68.99492 * 26 5 4 29 29 C 1.53244 * 108.52268 * 309.09563 * 26 5 4 30 30 N 1.46899 * 109.49439 * 120.05122 * 2 1 3 31 31 H 1.09001 * 109.47014 * 299.94814 * 1 2 3 32 32 H 1.08996 * 109.47295 * 59.94684 * 1 2 3 33 33 H 1.09001 * 109.47240 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.55926 * 66.55415 * 4 2 1 35 35 H 1.09001 * 109.46009 * 306.12189 * 4 2 1 36 36 H 0.97003 * 119.99810 * 4.65895 * 10 8 6 37 37 H 1.07995 * 120.00502 * 0.02562 * 12 11 10 38 38 H 1.08002 * 119.99855 * 179.73000 * 13 12 11 39 39 H 0.97004 * 119.99913 * 179.97438 * 19 18 16 40 40 H 1.07995 * 119.99633 * 179.97438 * 24 14 13 41 41 H 1.07998 * 120.00464 * 180.02562 * 25 24 14 42 42 H 1.09002 * 109.46939 * 60.00246 * 28 26 5 43 43 H 1.09000 * 109.47374 * 180.02562 * 28 26 5 44 44 H 1.09004 * 109.47385 * 300.00498 * 28 26 5 45 45 H 1.08999 * 109.49448 * 173.78425 * 29 26 5 46 46 H 1.08998 * 109.49095 * 293.87079 * 29 26 5 47 47 H 1.00903 * 111.00057 * 58.91302 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0416 -0.7184 -1.2475 5 7 3.5041 -0.8435 -1.1552 6 6 4.2977 -0.4496 -2.1709 7 8 5.5016 -0.5758 -2.0845 8 6 3.6954 0.1420 -3.4026 9 8 2.4894 0.1619 -3.5392 10 7 4.4909 0.6537 -4.3627 11 6 3.9271 1.2944 -5.4692 12 6 4.5664 2.3892 -6.0390 13 6 4.0066 3.0249 -7.1280 14 6 2.8096 2.5639 -7.6621 15 8 2.2619 3.1863 -8.7371 16 6 2.8671 4.3114 -9.1671 17 1 3.7927 4.6339 -8.7133 18 6 2.3017 5.0546 -10.1919 19 7 2.8922 6.1529 -10.6111 20 14 0.7007 4.4972 -10.9763 21 1 -0.4441 5.0967 -10.2447 22 1 0.6657 4.9352 -12.3949 23 1 0.6076 3.0165 -10.9130 24 6 2.1730 1.4664 -7.0960 25 6 2.7295 0.8336 -6.0036 26 6 4.0782 -1.4040 0.0775 27 1 5.1611 -1.2804 0.0664 28 6 3.7317 -2.8910 0.1758 29 6 3.4867 -0.6532 1.2753 30 7 2.0202 -0.6935 1.1986 31 1 -0.3633 0.5130 0.8905 32 1 -0.3634 0.5146 -0.8895 33 1 -0.3634 -1.0277 -0.0005 34 1 1.7787 -0.1417 -2.1343 35 1 1.5923 -1.7098 -1.3056 36 1 5.4548 0.5774 -4.2855 37 1 5.4992 2.7446 -5.6269 38 1 4.5010 3.8783 -7.5681 39 1 2.4968 6.6727 -11.3284 40 1 1.2425 1.1086 -7.5112 41 1 2.2348 -0.0198 -5.5639 42 1 4.1415 -3.4174 -0.6862 43 1 4.1579 -3.3037 1.0902 44 1 2.6485 -3.0113 0.1937 45 1 3.8157 -1.1270 2.2001 46 1 3.8235 0.3833 1.2572 47 1 1.6824 -1.6437 1.2302 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328694771.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:44 Heat of formation + Delta-G solvation = -56.003433 kcal Electronic energy + Delta-G solvation = -30398.687029 eV Core-core repulsion = 26161.578663 eV Total energy + Delta-G solvation = -4237.108366 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.47282 -41.16708 -40.33629 -39.22023 -38.38658 -35.84748 -35.06573 -34.38709 -34.03602 -31.97068 -30.49116 -30.04155 -27.65080 -27.30365 -26.65399 -25.57448 -24.07853 -23.26496 -22.49089 -21.73316 -20.59238 -19.86581 -19.28292 -19.10883 -18.32462 -17.76816 -17.29879 -16.77472 -16.53877 -16.46903 -16.15572 -15.83737 -15.71513 -15.62809 -15.33664 -15.22224 -15.01243 -14.59346 -14.40173 -14.32712 -14.19373 -14.04799 -13.64531 -13.34632 -13.28262 -13.22725 -12.85621 -12.74397 -12.61124 -12.56000 -12.43203 -12.14917 -12.04370 -11.99427 -11.84392 -11.51107 -11.20120 -10.77169 -10.69778 -10.13163 -9.90390 -9.16385 -8.79686 -8.49845 -6.21530 -0.04741 0.45957 0.61441 1.07638 1.33567 1.36915 1.53463 1.94826 2.24699 2.28743 2.72651 3.00361 3.05953 3.13496 3.19334 3.71533 3.86306 3.93841 3.97640 4.02649 4.05478 4.10328 4.33232 4.39774 4.41582 4.49329 4.54603 4.64554 4.69362 4.78791 4.87039 4.91520 4.95353 5.01744 5.09408 5.11028 5.17186 5.18677 5.30276 5.34216 5.45095 5.50054 5.73284 5.80827 5.86557 5.94663 6.07352 6.15055 6.42801 6.55965 6.78644 6.84363 7.56707 8.61177 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020688 B = 0.002173 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.143923 B =12879.412903 C =13616.280447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.076 3.924 3 H 0.067 0.933 4 C 0.020 3.980 5 N -0.570 5.570 6 C 0.513 3.487 7 O -0.542 6.542 8 C 0.505 3.495 9 O -0.508 6.508 10 N -0.618 5.618 11 C 0.057 3.943 12 C -0.077 4.077 13 C -0.215 4.215 14 C 0.121 3.879 15 O -0.239 6.239 16 C -0.399 4.399 17 H 0.086 0.914 18 C 0.011 3.989 19 N -0.920 5.920 20 Si 0.968 3.032 21 H -0.267 1.267 22 H -0.269 1.269 23 H -0.261 1.261 24 C -0.173 4.173 25 C -0.065 4.065 26 C 0.088 3.912 27 H 0.095 0.905 28 C -0.153 4.153 29 C 0.057 3.943 30 N -0.679 5.679 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.144 0.856 35 H 0.080 0.920 36 H 0.427 0.573 37 H 0.149 0.851 38 H 0.122 0.878 39 H 0.285 0.715 40 H 0.135 0.865 41 H 0.148 0.852 42 H 0.048 0.952 43 H 0.095 0.905 44 H 0.065 0.935 45 H 0.115 0.885 46 H 0.066 0.934 47 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.717 -18.240 24.833 30.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.035 4.035 3 H 0.085 0.915 4 C -0.103 4.103 5 N -0.302 5.302 6 C 0.295 3.705 7 O -0.420 6.420 8 C 0.288 3.712 9 O -0.386 6.386 10 N -0.264 5.264 11 C -0.036 4.036 12 C -0.097 4.097 13 C -0.235 4.235 14 C 0.072 3.928 15 O -0.146 6.146 16 C -0.475 4.475 17 H 0.104 0.896 18 C -0.187 4.187 19 N -0.561 5.561 20 Si 0.790 3.210 21 H -0.192 1.192 22 H -0.193 1.193 23 H -0.186 1.186 24 C -0.193 4.193 25 C -0.085 4.085 26 C -0.015 4.015 27 H 0.113 0.887 28 C -0.211 4.211 29 C -0.073 4.073 30 N -0.310 5.310 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.161 0.839 35 H 0.098 0.902 36 H 0.267 0.733 37 H 0.167 0.833 38 H 0.140 0.860 39 H 0.094 0.906 40 H 0.153 0.847 41 H 0.165 0.835 42 H 0.067 0.933 43 H 0.114 0.886 44 H 0.084 0.916 45 H 0.133 0.867 46 H 0.084 0.916 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.193 -17.638 24.984 30.606 hybrid contribution 0.602 -0.161 -1.429 1.559 sum -0.591 -17.799 23.555 29.530 Atomic orbital electron populations 1.21682 0.92097 1.03039 1.02677 1.21773 0.96845 0.97699 0.87137 0.91493 1.23889 0.77527 1.03950 1.04909 1.48189 1.08214 1.58651 1.15136 1.19767 0.86523 0.79757 0.84463 1.90755 1.14505 1.55924 1.80846 1.20361 0.86856 0.79498 0.84475 1.90379 1.14311 1.56497 1.77379 1.42859 1.11478 1.53678 1.18425 1.17395 0.97650 0.96877 0.91727 1.20799 1.00637 0.92867 0.95382 1.21131 0.97734 1.03959 1.00652 1.19664 0.92751 0.93260 0.87164 1.83523 1.52366 1.37716 1.41031 1.20732 1.08033 0.99361 1.19412 0.89606 1.25257 1.02314 0.94536 0.96641 1.69724 1.41539 1.15514 1.29289 0.85252 0.78338 0.79569 0.77817 1.19178 1.19342 1.18561 1.20345 1.02457 0.97420 0.99073 1.20924 0.94790 0.99309 0.93477 1.22332 1.00267 0.95004 0.83943 0.88688 1.22044 1.02577 0.93072 1.03448 1.22411 0.87575 1.00537 0.96798 1.60651 1.08860 1.22347 1.39094 0.91307 0.91858 0.91356 0.83912 0.90166 0.73350 0.83300 0.85979 0.90555 0.84707 0.83455 0.93277 0.88624 0.91565 0.86696 0.91582 0.82928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.48 71.98 0.68 -0.96 16 2 C 0.08 1.10 3.15 44.84 0.14 1.24 16 3 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 4 C 0.02 0.33 5.18 86.19 0.45 0.77 16 5 N -0.57 -10.45 2.71 -796.68 -2.16 -12.60 16 6 C 0.51 11.89 7.77 87.23 0.68 12.57 16 7 O -0.54 -14.28 15.95 -3.30 -0.05 -14.33 16 8 C 0.50 12.70 7.64 87.23 0.67 13.36 16 9 O -0.51 -13.86 10.48 -3.36 -0.04 -13.89 16 10 N -0.62 -15.51 5.32 -304.75 -1.62 -17.13 16 11 C 0.06 1.74 6.29 38.25 0.24 1.98 16 12 C -0.08 -2.52 9.96 22.39 0.22 -2.30 16 13 C -0.22 -8.93 9.16 22.37 0.20 -8.72 16 14 C 0.12 5.49 6.65 22.61 0.15 5.64 16 15 O -0.24 -12.61 8.58 -22.48 -0.19 -12.80 16 16 C -0.40 -22.83 9.94 67.92 0.68 -22.16 16 17 H 0.09 5.08 5.43 -2.91 -0.02 5.07 16 18 C 0.01 0.64 5.49 84.83 0.47 1.11 16 19 N -0.92 -53.97 13.96 21.61 0.30 -53.67 16 20 Si 0.97 44.61 28.62 68.60 1.96 46.57 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 24 C -0.17 -6.59 9.98 22.37 0.22 -6.37 16 25 C -0.07 -2.15 8.68 22.39 0.19 -1.96 16 26 C 0.09 1.21 3.21 44.96 0.14 1.35 16 27 H 0.10 1.55 7.07 -2.39 -0.02 1.54 16 28 C -0.15 -1.49 9.12 71.98 0.66 -0.83 16 29 C 0.06 0.64 6.16 86.38 0.53 1.17 16 30 N -0.68 -7.81 6.47 -491.52 -3.18 -10.98 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.14 3.04 3.94 -74.60 -0.29 2.75 16 35 H 0.08 1.15 7.65 -2.39 -0.02 1.13 16 36 H 0.43 9.04 8.30 -92.71 -0.77 8.27 16 37 H 0.15 3.88 8.06 -2.91 -0.02 3.85 16 38 H 0.12 5.49 5.63 -2.91 -0.02 5.47 16 39 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.14 4.73 8.06 -2.91 -0.02 4.71 16 41 H 0.15 4.44 6.25 -2.91 -0.02 4.42 16 42 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.07 0.54 6.15 -2.38 -0.01 0.53 16 45 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.35 3.01 7.21 -89.69 -0.65 2.36 16 Total: -1.00 -66.10 378.48 0.69 -65.41 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: -0.66 Total: 27.53 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 6.33 Total: -4.09 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -6.66 Total: -94.38 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -0.28 Total: -41.03 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.96 Total: 46.57 kcal Total: -66.10 0.69 -65.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328694771.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.403 kcal (2) G-P(sol) polarization free energy of solvation -66.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds