Wall clock time and date at job start Wed Apr 1 2020 06:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21281 * 120.00387 * 2 1 4 4 N 1.34782 * 119.99680 * 180.02562 * 2 1 3 5 5 C 1.39924 * 119.99856 * 184.62846 * 4 2 1 6 6 C 1.38899 * 120.06783 * 324.88839 * 5 4 2 7 7 C 1.38085 * 119.92562 * 180.02562 * 6 5 4 8 8 C 1.38302 * 120.07632 * 359.72915 * 7 6 5 9 9 C 1.38262 * 120.13609 * 0.54581 * 8 7 6 10 10 C 1.50702 * 119.96283 * 179.72572 * 9 8 7 11 11 H 1.09008 * 109.46872 * 159.72544 * 10 9 8 12 12 C 1.53000 * 109.47239 * 279.72565 * 10 9 8 13 13 N 1.46493 * 109.47263 * 39.72999 * 10 9 8 14 14 C 1.34774 * 120.00237 * 154.99553 * 13 10 9 15 15 O 1.21353 * 119.99865 * 0.02562 * 14 13 10 16 16 C 1.49455 * 120.00257 * 179.72374 * 14 13 10 17 17 O 1.21353 * 119.99819 * 0.27952 * 16 14 13 18 18 N 1.34771 * 120.00184 * 180.27985 * 16 14 13 19 19 C 1.46498 * 120.00270 * 180.02562 * 18 16 14 20 20 C 1.52997 * 109.47338 * 179.97438 * 19 18 16 21 21 C 1.50707 * 109.47120 * 180.02562 * 20 19 18 22 22 H 1.08001 * 119.99910 * 0.02562 * 21 20 19 23 23 C 1.37878 * 120.00067 * 180.02562 * 21 20 19 24 24 N 1.31515 * 119.99613 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99800 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47395 * 90.00049 * 25 23 21 27 27 H 1.48503 * 109.46846 * 209.99515 * 25 23 21 28 28 H 1.48498 * 109.47264 * 329.99532 * 25 23 21 29 29 C 1.38129 * 120.07153 * 359.45411 * 9 8 7 30 30 H 1.08998 * 109.47548 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46790 * 299.99984 * 1 2 3 32 32 H 1.08997 * 109.46816 * 59.99428 * 1 2 3 33 33 H 0.96998 * 119.99926 * 4.62083 * 4 2 1 34 34 H 1.07996 * 120.03351 * 0.05067 * 6 5 4 35 35 H 1.08005 * 119.96709 * 180.02562 * 7 6 5 36 36 H 1.07998 * 119.93481 * 180.27241 * 8 7 6 37 37 H 1.09002 * 109.46665 * 60.00583 * 12 10 9 38 38 H 1.09001 * 109.46973 * 180.02562 * 12 10 9 39 39 H 1.09001 * 109.47265 * 299.99955 * 12 10 9 40 40 H 0.96999 * 120.00153 * 335.00167 * 13 10 9 41 41 H 0.96999 * 120.00326 * 359.97438 * 18 16 14 42 42 H 1.09002 * 109.47220 * 300.00303 * 19 18 16 43 43 H 1.09006 * 109.47223 * 59.99441 * 19 18 16 44 44 H 1.08996 * 109.47179 * 300.00065 * 20 19 18 45 45 H 1.09000 * 109.46960 * 60.00066 * 20 19 18 46 46 H 0.97002 * 119.99719 * 180.02562 * 24 23 21 47 47 H 1.08008 * 120.04134 * 180.29281 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.5767 -1.1693 0.0973 6 6 4.3178 -0.1597 -0.5031 7 6 5.6952 -0.1649 -0.4052 8 6 6.3365 -1.1708 0.2944 9 6 5.6019 -2.1804 0.8883 10 6 6.3052 -3.2780 1.6445 11 1 5.6021 -3.7584 2.3251 12 6 6.8460 -4.3129 0.6559 13 7 7.4157 -2.7085 2.4116 14 6 7.8650 -3.3379 3.5155 15 8 7.3498 -4.3766 3.8737 16 6 9.0020 -2.7601 4.2946 17 8 9.5174 -1.7216 3.9362 18 7 9.4549 -3.3924 5.3952 19 6 10.5690 -2.8258 6.1593 20 6 10.8829 -3.7318 7.3515 21 6 12.0286 -3.1485 8.1378 22 1 12.4868 -2.2239 7.8193 23 6 12.4919 -3.7954 9.2639 24 7 11.9336 -4.9211 9.6520 25 14 13.9116 -3.0720 10.2389 26 1 13.3807 -2.1604 11.2840 27 1 14.6797 -4.1682 10.8820 28 1 14.8030 -2.3124 9.3258 29 6 4.2239 -2.1810 0.7941 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.6982 -2.0059 -0.0686 34 1 3.8174 0.6288 -1.0455 35 1 6.2722 0.6202 -0.8715 36 1 7.4136 -1.1702 0.3732 37 1 7.5490 -3.8325 -0.0246 38 1 7.3543 -5.1070 1.2029 39 1 6.0197 -4.7367 0.0851 40 1 7.8277 -1.8784 2.1252 41 1 9.0427 -4.2223 5.6820 42 1 11.4477 -2.7502 5.5187 43 1 10.2955 -1.8339 6.5192 44 1 10.0041 -3.8069 7.9920 45 1 11.1563 -4.7238 6.9919 46 1 12.2593 -5.3760 10.4444 47 1 3.6502 -2.9673 1.2623 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344979983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:06:04 Heat of formation + Delta-G solvation = -89.497762 kcal Electronic energy + Delta-G solvation = -28732.072360 eV Core-core repulsion = 24493.511572 eV Total energy + Delta-G solvation = -4238.560789 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.09063 -40.50121 -39.24369 -38.22496 -36.22644 -35.17409 -34.73564 -32.87543 -32.00454 -31.32447 -29.90170 -29.69756 -28.80246 -25.88502 -24.59401 -23.56211 -22.97717 -21.93523 -21.00844 -20.38318 -20.15733 -18.65268 -17.93500 -17.19147 -16.86195 -16.58609 -16.34210 -15.90335 -15.80286 -15.50638 -15.02505 -14.73093 -14.58308 -14.44467 -14.42303 -14.07781 -13.87169 -13.54828 -13.45227 -13.27559 -13.04880 -12.78683 -12.65571 -12.57322 -12.31959 -12.00611 -11.95336 -11.48962 -11.29174 -11.22826 -11.05845 -10.80222 -10.66367 -10.39449 -10.32972 -9.79706 -9.50227 -9.43344 -9.21589 -9.12545 -8.69173 -8.56993 -8.41395 -6.09875 -4.13485 0.85412 0.95180 1.60957 2.05825 2.45278 2.61443 3.29453 3.35683 3.37785 3.39583 3.44269 3.88686 4.15141 4.16558 4.40704 4.49025 4.56031 4.73770 4.76259 4.80821 4.90392 4.92126 4.98080 5.11691 5.17536 5.26331 5.27083 5.34791 5.55930 5.58982 5.84562 5.90642 5.91903 6.02429 6.14836 6.18540 6.24404 6.27485 6.59967 6.61123 6.69811 6.83577 7.04498 7.46833 7.56584 7.58156 7.66189 7.87472 7.92230 8.21481 8.34434 8.92069 9.51428 11.01581 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020443 B = 0.001590 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.305295 B =17603.221464 C =17836.802949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.510 3.490 3 O -0.526 6.526 4 N -0.674 5.674 5 C 0.142 3.858 6 C -0.119 4.119 7 C -0.096 4.096 8 C -0.124 4.124 9 C -0.074 4.074 10 C 0.183 3.817 11 H 0.101 0.899 12 C -0.159 4.159 13 N -0.701 5.701 14 C 0.511 3.489 15 O -0.519 6.519 16 C 0.497 3.503 17 O -0.533 6.533 18 N -0.686 5.686 19 C 0.118 3.882 20 C 0.011 3.989 21 C -0.523 4.523 22 H 0.060 0.940 23 C 0.059 3.941 24 N -0.892 5.892 25 Si 0.898 3.102 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.272 1.272 29 C -0.130 4.130 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.412 0.588 34 H 0.139 0.861 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.412 0.588 41 H 0.410 0.590 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.025 0.975 45 H 0.025 0.975 46 H 0.262 0.738 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.341 4.228 -24.879 34.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.298 3.702 3 O -0.401 6.401 4 N -0.320 5.320 5 C 0.048 3.952 6 C -0.139 4.139 7 C -0.114 4.114 8 C -0.143 4.143 9 C -0.075 4.075 10 C 0.079 3.921 11 H 0.119 0.881 12 C -0.217 4.217 13 N -0.356 5.356 14 C 0.292 3.708 15 O -0.394 6.394 16 C 0.276 3.724 17 O -0.411 6.411 18 N -0.336 5.336 19 C -0.003 4.003 20 C -0.027 4.027 21 C -0.562 4.562 22 H 0.078 0.922 23 C -0.143 4.143 24 N -0.531 5.531 25 Si 0.726 3.274 26 H -0.206 1.206 27 H -0.212 1.212 28 H -0.197 1.197 29 C -0.151 4.151 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.248 0.752 34 H 0.156 0.844 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.250 0.750 41 H 0.246 0.754 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.043 0.957 45 H 0.044 0.956 46 H 0.072 0.928 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -22.957 4.849 -24.692 34.062 hybrid contribution 0.463 -0.147 0.625 0.791 sum -22.494 4.703 -24.067 33.276 Atomic orbital electron populations 1.21864 0.90532 1.04666 1.05856 1.21054 0.90964 0.83108 0.75031 1.90751 1.70341 1.31291 1.47699 1.43669 1.05200 1.10047 1.73091 1.17679 0.82534 0.97089 0.97871 1.21306 0.93806 0.99079 0.99688 1.21068 0.93987 0.98120 0.98264 1.20989 1.00156 0.94586 0.98569 1.19625 0.93064 0.96149 0.98690 1.19848 0.88082 0.91700 0.92476 0.88149 1.22180 1.01887 0.98724 0.98918 1.45919 1.35291 1.27947 1.26432 1.20471 0.84332 0.84683 0.81319 1.90751 1.57864 1.22476 1.68343 1.19957 0.84350 0.85344 0.82717 1.90734 1.58713 1.22938 1.68691 1.46227 1.35132 1.26967 1.25314 1.21940 0.86095 0.98514 0.93765 1.19360 0.97620 0.94806 0.90901 1.21017 1.16405 1.08717 1.10077 0.92161 1.25000 0.97077 0.94851 0.97333 1.69962 1.41600 1.16474 1.25017 0.86494 0.82125 0.78696 0.80119 1.20558 1.21158 1.19726 1.20674 0.93863 1.00034 1.00525 0.90235 0.88158 0.88301 0.75196 0.84365 0.85285 0.85640 0.91890 0.91230 0.91176 0.75017 0.75387 0.91835 0.91859 0.95657 0.95636 0.92791 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.44 10.39 36.01 0.37 -0.07 16 2 C 0.51 3.55 7.78 -10.98 -0.09 3.46 16 3 O -0.53 -6.04 14.54 5.56 0.08 -5.96 16 4 N -0.67 -3.82 5.34 -9.86 -0.05 -3.88 16 5 C 0.14 1.17 6.30 -83.69 -0.53 0.65 16 6 C -0.12 -1.11 8.70 -39.39 -0.34 -1.46 16 7 C -0.10 -0.82 10.04 -39.61 -0.40 -1.22 16 8 C -0.12 -1.06 9.06 -39.55 -0.36 -1.42 16 9 C -0.07 -0.64 4.95 -104.65 -0.52 -1.16 16 10 C 0.18 1.73 2.78 -69.09 -0.19 1.54 16 11 H 0.10 1.01 7.44 -51.92 -0.39 0.63 16 12 C -0.16 -1.32 9.46 37.16 0.35 -0.97 16 13 N -0.70 -8.15 5.02 -55.36 -0.28 -8.43 16 14 C 0.51 7.57 7.85 -11.58 -0.09 7.48 16 15 O -0.52 -8.49 16.14 5.49 0.09 -8.40 16 16 C 0.50 8.58 7.89 -11.59 -0.09 8.49 16 17 O -0.53 -10.13 16.48 5.49 0.09 -10.04 16 18 N -0.69 -12.51 5.55 -60.73 -0.34 -12.85 16 19 C 0.12 2.48 5.61 -4.04 -0.02 2.46 16 20 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 21 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 22 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 23 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 24 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 25 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 29 C -0.13 -1.01 9.59 -39.39 -0.38 -1.39 16 30 H 0.08 0.00 7.92 -51.93 -0.41 -0.41 16 31 H 0.10 0.25 8.14 -51.92 -0.42 -0.17 16 32 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.41 0.87 8.66 -40.82 -0.35 0.52 16 34 H 0.14 1.40 6.22 -52.49 -0.33 1.08 16 35 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.13 0.94 6.89 -52.49 -0.36 0.58 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.41 4.50 6.32 -40.82 -0.26 4.24 16 41 H 0.41 7.12 7.94 -40.82 -0.32 6.79 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 47 H 0.13 0.74 8.04 -52.48 -0.42 0.32 16 LS Contribution 404.09 15.07 6.09 6.09 Total: -1.00 -34.92 404.09 -8.05 -42.96 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.61 Total: 6.21 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -2.83 Total: 3.36 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.07 Total: -50.50 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: 0.26 Total: -24.40 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.92 -8.05 -42.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344979983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.533 kcal (2) G-P(sol) polarization free energy of solvation -34.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds