Wall clock time and date at job start Wed Apr 1 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21292 * 120.00034 * 2 1 4 4 N 1.34777 * 120.00290 * 180.02562 * 2 1 3 5 5 C 1.39924 * 120.00186 * 185.27302 * 4 2 1 6 6 C 1.38897 * 120.07107 * 213.47404 * 5 4 2 7 7 C 1.38089 * 119.92940 * 180.23068 * 6 5 4 8 8 C 1.38304 * 120.06978 * 359.81772 * 7 6 5 9 9 C 1.38255 * 120.14137 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.96630 * 179.97438 * 9 8 7 11 11 H 1.08992 * 109.47433 * 199.97792 * 10 9 8 12 12 C 1.52999 * 109.47174 * 79.97453 * 10 9 8 13 13 N 1.46503 * 109.46860 * 319.97764 * 10 9 8 14 14 C 1.34775 * 120.00128 * 205.00094 * 13 10 9 15 15 O 1.21352 * 120.00065 * 359.97438 * 14 13 10 16 16 C 1.49444 * 120.00183 * 179.97438 * 14 13 10 17 17 O 1.21353 * 120.00061 * 359.97438 * 16 14 13 18 18 N 1.34775 * 120.00183 * 179.97438 * 16 14 13 19 19 C 1.46503 * 120.00128 * 180.02562 * 18 16 14 20 20 C 1.53003 * 109.47025 * 180.02562 * 19 18 16 21 21 C 1.50703 * 109.46863 * 179.97438 * 20 19 18 22 22 H 1.07996 * 120.00285 * 359.97438 * 21 20 19 23 23 C 1.37879 * 119.99833 * 179.97438 * 21 20 19 24 24 N 1.31521 * 119.99720 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00049 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47403 * 59.99626 * 25 23 21 27 27 H 1.48498 * 109.47120 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46944 * 299.99799 * 25 23 21 29 29 C 1.38138 * 120.07287 * 359.95681 * 9 8 7 30 30 H 1.08996 * 109.46824 * 239.99743 * 1 2 3 31 31 H 1.08994 * 109.46806 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.46926 * 119.99891 * 1 2 3 33 33 H 0.97006 * 119.99678 * 5.27373 * 4 2 1 34 34 H 1.08006 * 120.03486 * 359.97438 * 6 5 4 35 35 H 1.07995 * 119.96430 * 179.78873 * 7 6 5 36 36 H 1.08002 * 119.92654 * 179.97438 * 8 7 6 37 37 H 1.09003 * 109.47193 * 299.99951 * 12 10 9 38 38 H 1.08997 * 109.47238 * 60.00498 * 12 10 9 39 39 H 1.09003 * 109.47063 * 180.02562 * 12 10 9 40 40 H 0.97001 * 120.00062 * 24.99660 * 13 10 9 41 41 H 0.97001 * 120.00197 * 0.02562 * 18 16 14 42 42 H 1.08999 * 109.46920 * 299.99538 * 19 18 16 43 43 H 1.08997 * 109.47081 * 59.99594 * 19 18 16 44 44 H 1.08999 * 109.46770 * 299.99478 * 20 19 18 45 45 H 1.09001 * 109.47191 * 59.99777 * 20 19 18 46 46 H 0.96997 * 119.99583 * 180.02562 * 24 23 21 47 47 H 1.07996 * 120.03366 * 180.02562 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.5758 -1.1698 0.1108 6 6 4.3241 -2.1418 -0.5405 7 6 5.7002 -2.1445 -0.4247 8 6 6.3335 -1.1783 0.3357 9 6 5.5917 -0.2068 0.9818 10 6 6.2858 0.8438 1.8098 11 1 5.5741 1.2856 2.5071 12 6 6.8419 1.9328 0.8902 13 7 7.3848 0.2284 2.5580 14 6 7.8195 0.7919 3.7025 15 8 7.3010 1.8094 4.1130 16 6 8.9402 0.1639 4.4660 17 8 9.4585 -0.8538 4.0558 18 7 9.3753 0.7277 5.6102 19 6 10.4743 0.1123 6.3584 20 6 10.7694 0.9445 7.6080 21 6 11.8995 0.3110 8.3780 22 1 12.3608 -0.5946 8.0128 23 6 12.3445 0.8878 9.5486 24 7 11.7831 1.9910 9.9929 25 14 13.7458 0.1031 10.5026 26 1 14.9578 0.0481 9.6464 27 1 14.0321 0.9107 11.7155 28 1 13.3608 -1.2736 10.9048 29 6 4.2150 -0.1978 0.8688 30 1 -0.3633 -0.5139 0.8899 31 1 -0.3633 1.0276 0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 1.6990 -2.0055 -0.0781 34 1 3.8301 -2.8973 -1.1335 35 1 6.2824 -2.9021 -0.9281 36 1 7.4098 -1.1828 0.4250 37 1 7.5537 1.4910 0.1928 38 1 6.0243 2.3907 0.3335 39 1 7.3443 2.6924 1.4891 40 1 7.7995 -0.5847 2.2297 41 1 8.9608 1.5410 5.9384 42 1 10.1918 -0.8982 6.6537 43 1 11.3639 0.0718 5.7299 44 1 11.0518 1.9551 7.3131 45 1 9.8796 0.9845 8.2364 46 1 12.0964 2.3970 10.8162 47 1 3.6362 0.5617 1.3734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344979999.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:06:08 Heat of formation + Delta-G solvation = -90.225200 kcal Electronic energy + Delta-G solvation = -28913.093853 eV Core-core repulsion = 24674.501520 eV Total energy + Delta-G solvation = -4238.592333 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.08971 -40.45341 -39.19491 -38.20992 -36.26400 -35.15566 -34.66023 -32.86102 -31.96541 -31.33542 -29.84636 -29.60075 -28.87958 -25.86028 -24.53611 -23.53227 -23.24138 -21.31609 -21.09511 -20.71542 -20.06684 -18.69764 -17.58018 -17.41521 -16.81953 -16.58638 -16.32482 -15.96716 -15.75286 -15.40301 -15.07923 -14.72311 -14.52710 -14.41947 -14.37278 -14.02905 -13.81200 -13.54785 -13.45453 -13.20109 -13.02938 -12.81145 -12.60887 -12.48894 -12.30619 -12.10032 -11.84348 -11.45277 -11.24509 -11.21660 -11.03609 -10.83256 -10.67510 -10.37520 -10.35368 -9.78444 -9.47439 -9.41332 -9.20416 -9.09914 -8.67646 -8.55074 -8.40116 -6.08709 -4.12498 0.81472 0.99108 1.64298 2.08445 2.50253 2.59316 3.31528 3.35701 3.37920 3.39278 3.46825 3.91955 4.08767 4.27896 4.41473 4.52631 4.65906 4.72172 4.76600 4.77434 4.85828 4.95231 5.04180 5.15158 5.19556 5.27977 5.28770 5.45997 5.58788 5.67480 5.86275 5.90850 5.98595 6.06910 6.08168 6.19778 6.25474 6.32417 6.60452 6.61512 6.71088 6.83777 7.08612 7.48364 7.57681 7.59463 7.69193 7.88437 7.95429 8.22895 8.36025 8.92828 9.52235 11.02692 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021561 B = 0.001649 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.359142 B =16980.544674 C =17403.615537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.521 6.521 4 N -0.676 5.676 5 C 0.146 3.854 6 C -0.145 4.145 7 C -0.094 4.094 8 C -0.126 4.126 9 C -0.071 4.071 10 C 0.183 3.817 11 H 0.101 0.899 12 C -0.159 4.159 13 N -0.701 5.701 14 C 0.510 3.490 15 O -0.518 6.518 16 C 0.498 3.502 17 O -0.534 6.534 18 N -0.686 5.686 19 C 0.119 3.881 20 C 0.011 3.989 21 C -0.524 4.524 22 H 0.060 0.940 23 C 0.060 3.940 24 N -0.892 5.892 25 Si 0.899 3.101 26 H -0.276 1.276 27 H -0.287 1.287 28 H -0.276 1.276 29 C -0.107 4.107 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.412 0.588 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.411 0.589 41 H 0.411 0.589 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.025 0.975 45 H 0.025 0.975 46 H 0.263 0.737 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.969 -7.847 -25.263 35.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.297 3.703 3 O -0.396 6.396 4 N -0.322 5.322 5 C 0.052 3.948 6 C -0.165 4.165 7 C -0.112 4.112 8 C -0.145 4.145 9 C -0.073 4.073 10 C 0.079 3.921 11 H 0.119 0.881 12 C -0.217 4.217 13 N -0.356 5.356 14 C 0.291 3.709 15 O -0.393 6.393 16 C 0.277 3.723 17 O -0.412 6.412 18 N -0.337 5.337 19 C -0.003 4.003 20 C -0.027 4.027 21 C -0.563 4.563 22 H 0.078 0.922 23 C -0.143 4.143 24 N -0.530 5.530 25 Si 0.726 3.274 26 H -0.201 1.201 27 H -0.212 1.212 28 H -0.201 1.201 29 C -0.127 4.127 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.248 0.752 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.249 0.751 41 H 0.246 0.754 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.044 0.956 45 H 0.043 0.957 46 H 0.073 0.927 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -22.595 -6.900 -25.057 34.438 hybrid contribution 0.452 -0.874 0.486 1.097 sum -22.144 -7.774 -24.571 33.978 Atomic orbital electron populations 1.21937 0.90533 1.06206 1.04619 1.21071 0.91005 0.83122 0.75149 1.90780 1.70568 1.31153 1.47068 1.43622 1.05247 1.10032 1.73308 1.17659 0.82683 0.97399 0.97066 1.20905 0.94255 1.00364 1.00998 1.20926 0.93722 0.98356 0.98233 1.20980 1.00161 0.95147 0.98227 1.19740 0.93253 0.96189 0.98088 1.19852 0.88284 0.91391 0.92599 0.88113 1.22172 1.01856 0.98215 0.99446 1.45922 1.36076 1.29915 1.23650 1.20464 0.84222 0.84685 0.81555 1.90759 1.57067 1.23499 1.67966 1.19961 0.84224 0.85234 0.82867 1.90725 1.58011 1.24028 1.68428 1.46233 1.36065 1.29051 1.22310 1.21935 0.86526 0.97754 0.94074 1.19358 0.97677 0.95423 0.90219 1.20977 1.17372 1.10597 1.07341 0.92218 1.25003 0.96979 0.94914 0.97364 1.69954 1.41705 1.19106 1.22272 0.86551 0.82369 0.79263 0.79204 1.20107 1.21236 1.20125 1.20918 0.93679 0.99452 0.98699 0.88884 0.88414 0.89083 0.75215 0.85631 0.85221 0.85607 0.91985 0.90971 0.91236 0.75119 0.75364 0.91876 0.91853 0.95634 0.95652 0.92728 0.84534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.47 10.32 36.01 0.37 -0.10 16 2 C 0.51 3.60 7.68 -10.98 -0.08 3.52 16 3 O -0.52 -6.12 14.77 5.55 0.08 -6.04 16 4 N -0.68 -3.83 5.34 -9.86 -0.05 -3.88 16 5 C 0.15 1.21 6.28 -83.69 -0.53 0.68 16 6 C -0.14 -0.99 9.96 -39.39 -0.39 -1.38 16 7 C -0.09 -0.67 10.04 -39.61 -0.40 -1.07 16 8 C -0.13 -1.08 9.05 -39.55 -0.36 -1.43 16 9 C -0.07 -0.71 4.95 -104.65 -0.52 -1.23 16 10 C 0.18 2.02 2.77 -69.08 -0.19 1.83 16 11 H 0.10 1.24 7.44 -51.93 -0.39 0.85 16 12 C -0.16 -1.63 9.46 37.16 0.35 -1.28 16 13 N -0.70 -8.62 5.02 -55.37 -0.28 -8.89 16 14 C 0.51 7.87 7.85 -11.59 -0.09 7.78 16 15 O -0.52 -8.94 16.14 5.49 0.09 -8.85 16 16 C 0.50 8.73 7.89 -11.59 -0.09 8.64 16 17 O -0.53 -10.19 16.48 5.49 0.09 -10.10 16 18 N -0.69 -12.71 5.55 -60.73 -0.34 -13.04 16 19 C 0.12 2.51 5.61 -4.04 -0.02 2.48 16 20 C 0.01 0.27 5.09 -27.88 -0.14 0.12 16 21 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 22 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 23 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 24 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 25 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 C -0.11 -1.09 8.28 -39.39 -0.33 -1.42 16 30 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.10 0.33 8.12 -51.93 -0.42 -0.09 16 32 H 0.09 0.06 8.14 -51.93 -0.42 -0.37 16 33 H 0.41 0.82 8.82 -40.82 -0.36 0.46 16 34 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16 35 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.13 0.94 6.91 -52.49 -0.36 0.58 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.41 4.60 6.34 -40.82 -0.26 4.34 16 41 H 0.41 7.28 7.94 -40.82 -0.32 6.95 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.14 1.56 6.39 -52.49 -0.34 1.23 16 LS Contribution 404.66 15.07 6.10 6.10 Total: -1.00 -35.02 404.66 -8.06 -43.08 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.64 Total: 6.84 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -2.83 Total: 3.92 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 0.07 Total: -51.29 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: 0.26 Total: -24.98 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.02 -8.06 -43.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344979999.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.146 kcal (2) G-P(sol) polarization free energy of solvation -35.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds