Wall clock time and date at job start Wed Apr 1 2020 04:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 110.00008 * 2 1 4 4 C 1.54319 * 109.98465 * 238.97146 * 2 1 3 5 5 C 1.55159 * 102.86041 * 263.05005 * 4 2 1 6 6 H 1.08999 * 111.00824 * 82.38331 * 5 4 2 7 7 N 1.46905 * 111.00221 * 206.23502 * 5 4 2 8 8 C 1.46903 * 110.99873 * 198.65207 * 7 5 4 9 9 C 1.50699 * 109.47307 * 179.97438 * 8 7 5 10 10 O 1.21292 * 119.99686 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00411 * 180.02562 * 9 8 7 12 12 C 1.37100 * 120.00211 * 179.97438 * 11 9 8 13 13 H 1.07997 * 120.00086 * 0.02562 * 12 11 9 14 14 C 1.38953 * 119.99641 * 179.97438 * 12 11 9 15 15 N 1.31410 * 120.00510 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99556 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47112 * 90.00010 * 16 14 12 18 18 H 1.48500 * 109.46961 * 209.99855 * 16 14 12 19 19 H 1.48493 * 109.46995 * 330.00022 * 16 14 12 20 20 C 1.54907 * 101.58290 * 324.30225 * 5 4 2 21 21 N 1.47021 * 109.87770 * 121.09905 * 2 1 3 22 22 C 1.34782 * 125.64682 * 300.50370 * 21 2 1 23 23 O 1.21782 * 120.00038 * 359.73012 * 22 21 2 24 24 C 1.41547 * 119.99854 * 179.97438 * 22 21 2 25 25 C 1.35623 * 119.99917 * 186.12380 * 24 22 21 26 26 C 1.41610 * 120.00225 * 9.02768 * 25 24 22 27 27 C 1.37950 * 126.10830 * 220.51333 * 26 25 24 28 28 C 1.40307 * 106.53496 * 179.97438 * 27 26 25 29 29 C 1.35164 * 107.20119 * 359.97438 * 28 27 26 30 30 O 1.34021 * 109.03322 * 359.76317 * 29 28 27 31 31 H 1.08992 * 109.46790 * 300.36218 * 1 2 3 32 32 H 1.09007 * 109.46400 * 60.36240 * 1 2 3 33 33 H 1.09002 * 109.46952 * 180.35489 * 1 2 3 34 34 H 1.08996 * 110.92112 * 144.64149 * 4 2 1 35 35 H 1.08995 * 110.74693 * 21.37449 * 4 2 1 36 36 H 1.00901 * 110.99661 * 322.59634 * 7 5 4 37 37 H 1.09003 * 109.46799 * 299.99762 * 8 7 5 38 38 H 1.08995 * 109.47147 * 59.99356 * 8 7 5 39 39 H 0.97008 * 119.99738 * 359.97438 * 11 9 8 40 40 H 0.96998 * 120.00335 * 180.02562 * 15 14 12 41 41 H 1.08994 * 110.37178 * 278.17118 * 20 5 4 42 42 H 1.09004 * 110.46064 * 155.89392 * 20 5 4 43 43 H 1.07998 * 120.00357 * 6.11894 * 24 22 21 44 44 H 1.07998 * 120.00112 * 189.02684 * 25 24 22 45 45 H 1.08008 * 126.73190 * 359.97438 * 27 26 25 46 46 H 1.07992 * 126.40220 * 180.02562 * 28 27 26 47 47 H 1.08001 * 125.47544 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0575 -0.7476 -1.2428 5 6 2.3475 -2.1693 -0.6933 6 1 1.4382 -2.7695 -0.6629 7 7 3.3903 -2.8368 -1.4840 8 6 3.3627 -4.2901 -1.2716 9 6 4.4433 -4.9391 -2.0974 10 8 5.1651 -4.2580 -2.7948 11 7 4.6071 -6.2764 -2.0620 12 6 5.5898 -6.8669 -2.8137 13 1 6.2331 -6.2604 -3.4340 14 6 5.7589 -8.2456 -2.7767 15 7 4.9773 -8.9834 -2.0208 16 14 7.0985 -9.0500 -3.8005 17 1 8.3511 -9.1245 -3.0062 18 1 6.6731 -10.4202 -4.1836 19 1 7.3362 -8.2448 -5.0253 20 6 2.8523 -1.8531 0.7367 21 7 2.0300 -0.7141 1.1839 22 6 1.7742 -0.3853 2.4657 23 8 1.0779 0.5812 2.7191 24 6 2.3192 -1.1602 3.5174 25 6 1.9633 -0.9067 4.8013 26 6 0.9094 -0.0023 5.0786 27 6 0.8866 0.9334 6.0920 28 6 -0.3425 1.6024 5.9902 29 6 -1.0059 1.0626 4.9435 30 8 -0.2489 0.1026 4.3944 31 1 -0.3632 0.5194 0.8867 32 1 -0.3632 0.5082 -0.8933 33 1 -0.3633 -1.0277 0.0064 34 1 2.9708 -0.2850 -1.6167 35 1 1.2974 -0.7835 -2.0232 36 1 3.3000 -2.6129 -2.4637 37 1 3.5318 -4.5064 -0.2167 38 1 2.3912 -4.6828 -1.5717 39 1 4.0295 -6.8211 -1.5045 40 1 5.0956 -9.9458 -1.9947 41 1 3.9058 -1.5747 0.7143 42 1 2.7011 -2.7106 1.3925 43 1 3.0184 -1.9534 3.2975 44 1 2.4835 -1.3945 5.6123 45 1 1.6626 1.1152 6.8209 46 1 -0.6927 2.4002 6.6282 47 1 -1.9866 1.3598 4.6024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755667982.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:12 Heat of formation + Delta-G solvation = -17.764097 kcal Electronic energy + Delta-G solvation = -29818.975376 eV Core-core repulsion = 25583.525192 eV Total energy + Delta-G solvation = -4235.450184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.53803 -40.49065 -38.53748 -37.83679 -34.90773 -34.25603 -33.81354 -32.98179 -32.10722 -31.27272 -29.93613 -28.84548 -26.39283 -26.04476 -24.74185 -23.96498 -22.06423 -21.77850 -20.88657 -20.26659 -19.29640 -18.91101 -18.02738 -17.90692 -16.87197 -16.33048 -16.10078 -15.84138 -15.55246 -15.21753 -14.83873 -14.56246 -14.37969 -14.14084 -14.04119 -13.62979 -13.49133 -13.41070 -13.15488 -12.99708 -12.81681 -12.69937 -12.64742 -12.38606 -12.23918 -11.99466 -11.71956 -11.55989 -11.15600 -11.13796 -11.04860 -10.74870 -10.41947 -10.32383 -10.24902 -10.04850 -9.84375 -9.54381 -8.75781 -8.53321 -8.19694 -8.13644 -8.00082 -6.45089 -3.86055 0.36079 1.95398 2.51807 2.86972 3.04086 3.15635 3.24683 3.29314 3.30318 3.86009 3.99888 4.19403 4.34178 4.43460 4.55610 4.70083 4.83887 4.85787 4.88836 5.01893 5.10836 5.14130 5.19920 5.23532 5.30067 5.43670 5.45453 5.53162 5.56288 5.67275 5.69410 5.74572 5.78520 5.79705 5.88100 5.92038 5.93645 6.04787 6.13360 6.22324 6.32212 6.39031 7.05528 7.10723 7.40566 7.52095 7.53568 8.02527 8.09509 8.57133 9.14357 9.50262 10.01315 10.72502 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019542 B = 0.001888 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.443410 B =14829.605917 C =15764.061906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.075 0.925 4 C -0.130 4.130 5 C 0.075 3.925 6 H 0.059 0.941 7 N -0.657 5.657 8 C 0.049 3.951 9 C 0.440 3.560 10 O -0.583 6.583 11 N -0.563 5.563 12 C -0.300 4.300 13 H 0.103 0.897 14 C 0.022 3.978 15 N -0.901 5.901 16 Si 0.930 3.070 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.270 1.270 20 C 0.106 3.894 21 N -0.610 5.610 22 C 0.557 3.443 23 O -0.528 6.528 24 C -0.200 4.200 25 C 0.001 3.999 26 C 0.011 3.989 27 C -0.183 4.183 28 C -0.226 4.226 29 C -0.019 4.019 30 O -0.133 6.133 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.356 0.644 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.139 0.861 44 H 0.156 0.844 45 H 0.147 0.853 46 H 0.145 0.855 47 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.246 16.763 14.015 25.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.093 0.907 4 C -0.168 4.168 5 C -0.036 4.036 6 H 0.077 0.923 7 N -0.290 5.290 8 C -0.083 4.083 9 C 0.225 3.775 10 O -0.467 6.467 11 N -0.199 5.199 12 C -0.429 4.429 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.542 5.542 16 Si 0.757 3.243 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.017 4.017 21 N -0.344 5.344 22 C 0.349 3.651 23 O -0.407 6.407 24 C -0.221 4.221 25 C -0.019 4.019 26 C -0.039 4.039 27 C -0.203 4.203 28 C -0.245 4.245 29 C -0.090 4.090 30 O -0.026 6.026 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.177 0.823 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.157 0.843 44 H 0.174 0.826 45 H 0.165 0.835 46 H 0.163 0.837 47 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -11.710 17.456 13.952 25.229 hybrid contribution -0.372 -1.068 -0.494 1.235 sum -12.082 16.387 13.457 24.406 Atomic orbital electron populations 1.22133 0.94715 1.02243 1.02824 1.21438 0.94568 0.96247 0.84075 0.90691 1.22891 1.02436 0.94916 0.96585 1.22610 0.93105 0.94500 0.93434 0.92298 1.59987 1.47133 1.07666 1.14229 1.21745 0.97632 0.87955 1.00990 1.19765 0.87811 0.83069 0.86832 1.90530 1.48563 1.62731 1.44899 1.41864 1.31723 1.05096 1.41241 1.19705 1.10553 0.90433 1.22257 0.87886 1.25269 0.98580 0.96311 0.97769 1.69607 1.38737 1.06560 1.39340 0.85853 0.80308 0.78194 0.79913 1.20370 1.20936 1.19417 1.22414 0.95874 0.88326 0.95109 1.48451 1.50806 1.30147 1.04997 1.16737 0.81033 0.85498 0.81786 1.90848 1.38248 1.28873 1.82735 1.22347 1.04490 1.02043 0.93177 1.20657 0.91631 0.92553 0.97028 1.19588 0.88917 1.01741 0.93701 1.22135 0.99029 0.98758 1.00336 1.21611 0.96131 1.04800 1.01946 1.24119 0.97716 0.91414 0.95705 1.84267 1.24693 1.46428 1.47237 0.91024 0.91904 0.92646 0.89220 0.89889 0.82312 0.89583 0.93668 0.77458 0.91841 0.89701 0.90737 0.84281 0.82632 0.83475 0.83713 0.78674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.07 37.16 0.34 -1.31 16 2 C 0.14 1.50 3.48 -66.95 -0.23 1.27 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.13 -1.28 5.97 -24.90 -0.15 -1.43 16 5 C 0.07 0.84 3.31 -65.56 -0.22 0.63 16 6 H 0.06 0.66 7.92 -51.93 -0.41 0.25 16 7 N -0.66 -9.54 6.00 -105.72 -0.63 -10.18 16 8 C 0.05 0.80 6.04 -4.98 -0.03 0.77 16 9 C 0.44 9.94 7.82 -10.99 -0.09 9.85 16 10 O -0.58 -15.28 15.78 5.55 0.09 -15.20 16 11 N -0.56 -13.82 5.29 -10.96 -0.06 -13.88 16 12 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 13 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 14 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 15 N -0.90 -24.07 13.05 55.50 0.72 -23.34 16 16 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 20 C 0.11 1.17 6.10 -2.53 -0.02 1.15 16 21 N -0.61 -7.03 3.08 -166.41 -0.51 -7.55 16 22 C 0.56 7.05 7.19 -15.00 -0.11 6.94 16 23 O -0.53 -7.93 11.33 -19.69 -0.22 -8.16 16 24 C -0.20 -2.01 9.31 -39.26 -0.37 -2.37 16 25 C 0.00 0.01 9.95 -39.23 -0.39 -0.38 16 26 C 0.01 0.12 5.31 -38.40 -0.20 -0.08 16 27 C -0.18 -1.84 10.90 -38.91 -0.42 -2.26 16 28 C -0.23 -2.14 10.87 -39.90 -0.43 -2.57 16 29 C -0.02 -0.19 12.06 29.64 0.36 0.17 16 30 O -0.13 -1.68 7.83 -20.13 -0.16 -1.84 16 31 H 0.07 0.87 6.74 -51.93 -0.35 0.52 16 32 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.71 7.84 -51.93 -0.41 0.30 16 36 H 0.36 5.36 8.23 -39.29 -0.32 5.03 16 37 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 39 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 40 H 0.27 6.87 8.31 -40.82 -0.34 6.54 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 0.74 7.21 -51.93 -0.37 0.36 16 43 H 0.14 1.10 6.84 -52.49 -0.36 0.74 16 44 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.15 1.13 8.06 -52.48 -0.42 0.70 16 46 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.20 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 393.10 15.07 5.92 5.92 Total: -1.00 -33.73 393.10 -8.78 -42.51 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -6.71 Total: 13.50 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -2.20 Total: 2.52 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.48 Total: -54.95 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.29 Total: -25.19 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.73 -8.78 -42.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755667982.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.746 kcal (2) G-P(sol) polarization free energy of solvation -33.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds