Wall clock time and date at job start Wed Apr 1 2020 04:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 110.00008 * 2 1 4 4 C 1.54319 * 109.98465 * 238.97146 * 2 1 3 5 5 C 1.55159 * 102.86041 * 263.05005 * 4 2 1 6 6 H 1.08999 * 111.00824 * 82.38331 * 5 4 2 7 7 N 1.46905 * 111.00221 * 206.23502 * 5 4 2 8 8 C 1.46903 * 110.99873 * 198.65207 * 7 5 4 9 9 C 1.50699 * 109.47307 * 179.97438 * 8 7 5 10 10 O 1.21292 * 119.99686 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00411 * 180.02562 * 9 8 7 12 12 C 1.37100 * 120.00211 * 179.97438 * 11 9 8 13 13 H 1.07997 * 120.00086 * 0.02562 * 12 11 9 14 14 C 1.38953 * 119.99641 * 179.97438 * 12 11 9 15 15 N 1.31410 * 120.00510 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99556 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47112 * 90.00010 * 16 14 12 18 18 H 1.48500 * 109.46961 * 209.99855 * 16 14 12 19 19 H 1.48493 * 109.46995 * 330.00022 * 16 14 12 20 20 C 1.54907 * 101.58290 * 324.30225 * 5 4 2 21 21 N 1.47021 * 109.87770 * 121.09905 * 2 1 3 22 22 C 1.34782 * 125.64682 * 300.50370 * 21 2 1 23 23 O 1.21782 * 120.00038 * 359.73012 * 22 21 2 24 24 C 1.41547 * 119.99854 * 179.97438 * 22 21 2 25 25 C 1.35623 * 119.99917 * 186.12380 * 24 22 21 26 26 C 1.41610 * 120.00225 * 9.02768 * 25 24 22 27 27 C 1.37950 * 126.10830 * 220.51333 * 26 25 24 28 28 C 1.40307 * 106.53496 * 179.97438 * 27 26 25 29 29 C 1.35164 * 107.20119 * 359.97438 * 28 27 26 30 30 O 1.34021 * 109.03322 * 359.76317 * 29 28 27 31 31 H 1.08992 * 109.46790 * 300.36218 * 1 2 3 32 32 H 1.09007 * 109.46400 * 60.36240 * 1 2 3 33 33 H 1.09002 * 109.46952 * 180.35489 * 1 2 3 34 34 H 1.08996 * 110.92112 * 144.64149 * 4 2 1 35 35 H 1.08995 * 110.74693 * 21.37449 * 4 2 1 36 36 H 1.00901 * 110.99661 * 322.59634 * 7 5 4 37 37 H 1.09003 * 109.46799 * 299.99762 * 8 7 5 38 38 H 1.08995 * 109.47147 * 59.99356 * 8 7 5 39 39 H 0.97008 * 119.99738 * 359.97438 * 11 9 8 40 40 H 0.96998 * 120.00335 * 180.02562 * 15 14 12 41 41 H 1.08994 * 110.37178 * 278.17118 * 20 5 4 42 42 H 1.09004 * 110.46064 * 155.89392 * 20 5 4 43 43 H 1.07998 * 120.00357 * 6.11894 * 24 22 21 44 44 H 1.07998 * 120.00112 * 189.02684 * 25 24 22 45 45 H 1.08008 * 126.73190 * 359.97438 * 27 26 25 46 46 H 1.07992 * 126.40220 * 180.02562 * 28 27 26 47 47 H 1.08001 * 125.47544 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0575 -0.7476 -1.2428 5 6 2.3475 -2.1693 -0.6933 6 1 1.4382 -2.7695 -0.6629 7 7 3.3903 -2.8368 -1.4840 8 6 3.3627 -4.2901 -1.2716 9 6 4.4433 -4.9391 -2.0974 10 8 5.1651 -4.2580 -2.7948 11 7 4.6071 -6.2764 -2.0620 12 6 5.5898 -6.8669 -2.8137 13 1 6.2331 -6.2604 -3.4340 14 6 5.7589 -8.2456 -2.7767 15 7 4.9773 -8.9834 -2.0208 16 14 7.0985 -9.0500 -3.8005 17 1 8.3511 -9.1245 -3.0062 18 1 6.6731 -10.4202 -4.1836 19 1 7.3362 -8.2448 -5.0253 20 6 2.8523 -1.8531 0.7367 21 7 2.0300 -0.7141 1.1839 22 6 1.7742 -0.3853 2.4657 23 8 1.0779 0.5812 2.7191 24 6 2.3192 -1.1602 3.5174 25 6 1.9633 -0.9067 4.8013 26 6 0.9094 -0.0023 5.0786 27 6 0.8866 0.9334 6.0920 28 6 -0.3425 1.6024 5.9902 29 6 -1.0059 1.0626 4.9435 30 8 -0.2489 0.1026 4.3944 31 1 -0.3632 0.5194 0.8867 32 1 -0.3632 0.5082 -0.8933 33 1 -0.3633 -1.0277 0.0064 34 1 2.9708 -0.2850 -1.6167 35 1 1.2974 -0.7835 -2.0232 36 1 3.3000 -2.6129 -2.4637 37 1 3.5318 -4.5064 -0.2167 38 1 2.3912 -4.6828 -1.5717 39 1 4.0295 -6.8211 -1.5045 40 1 5.0956 -9.9458 -1.9947 41 1 3.9058 -1.5747 0.7143 42 1 2.7011 -2.7106 1.3925 43 1 3.0184 -1.9534 3.2975 44 1 2.4835 -1.3945 5.6123 45 1 1.6626 1.1152 6.8209 46 1 -0.6927 2.4002 6.6282 47 1 -1.9866 1.3598 4.6024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755667982.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:11 Heat of formation + Delta-G solvation = -40.267706 kcal Electronic energy + Delta-G solvation = -29819.951206 eV Core-core repulsion = 25583.525192 eV Total energy + Delta-G solvation = -4236.426013 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.29550 -41.38576 -40.13058 -38.97647 -36.24983 -35.59479 -35.03254 -33.73967 -33.24983 -32.94290 -31.01629 -29.59959 -27.92368 -26.89916 -25.93833 -25.24855 -22.92082 -22.53100 -21.76443 -21.23487 -20.88658 -19.89653 -19.73467 -18.84989 -17.86421 -17.51068 -17.11766 -16.86954 -16.67380 -16.49613 -16.26370 -15.89976 -15.54016 -15.22999 -15.07044 -14.87146 -14.60205 -14.54555 -13.96791 -13.92680 -13.76470 -13.67590 -13.52879 -13.38887 -13.38798 -13.21862 -13.02834 -12.89404 -12.80883 -12.39679 -12.12192 -12.03353 -11.98267 -11.65330 -11.48408 -11.07857 -10.89721 -10.64887 -10.31804 -9.99097 -9.67038 -9.38650 -8.88620 -8.44792 -5.93063 -0.38066 1.19739 1.39539 1.43706 1.55843 1.77860 2.00823 2.08270 2.29125 2.31457 2.51385 2.90831 3.23012 3.35211 3.56573 3.61104 3.85892 3.96955 4.04109 4.16340 4.21205 4.23199 4.30815 4.35441 4.38012 4.48082 4.53342 4.60195 4.64980 4.69054 4.79568 4.86668 4.88819 4.93193 5.00802 5.05834 5.08656 5.12102 5.28847 5.34875 5.43401 5.50680 5.69555 5.89894 6.10667 6.31245 6.35965 6.53816 6.62392 7.15141 7.20099 7.59291 8.14450 8.72417 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019542 B = 0.001888 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.443410 B =14829.605917 C =15764.061906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.137 3.863 3 H 0.066 0.934 4 C -0.120 4.120 5 C 0.079 3.921 6 H 0.070 0.930 7 N -0.666 5.666 8 C 0.065 3.935 9 C 0.439 3.561 10 O -0.623 6.623 11 N -0.573 5.573 12 C -0.332 4.332 13 H 0.079 0.921 14 C -0.013 4.013 15 N -0.920 5.920 16 Si 0.991 3.009 17 H -0.272 1.272 18 H -0.272 1.272 19 H -0.273 1.273 20 C 0.109 3.891 21 N -0.611 5.611 22 C 0.548 3.452 23 O -0.559 6.559 24 C -0.220 4.220 25 C 0.012 3.988 26 C -0.018 4.018 27 C -0.188 4.188 28 C -0.234 4.234 29 C -0.033 4.033 30 O -0.159 6.159 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.353 0.647 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.397 0.603 40 H 0.277 0.723 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.160 0.840 44 H 0.193 0.807 45 H 0.169 0.831 46 H 0.167 0.833 47 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.661 16.495 14.874 25.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.034 3.966 3 H 0.084 0.916 4 C -0.158 4.158 5 C -0.032 4.032 6 H 0.088 0.912 7 N -0.300 5.300 8 C -0.068 4.068 9 C 0.226 3.774 10 O -0.509 6.509 11 N -0.211 5.211 12 C -0.462 4.462 13 H 0.097 0.903 14 C -0.213 4.213 15 N -0.561 5.561 16 Si 0.815 3.185 17 H -0.197 1.197 18 H -0.197 1.197 19 H -0.198 1.198 20 C -0.015 4.015 21 N -0.344 5.344 22 C 0.342 3.658 23 O -0.441 6.441 24 C -0.240 4.240 25 C -0.007 4.007 26 C -0.068 4.068 27 C -0.208 4.208 28 C -0.253 4.253 29 C -0.103 4.103 30 O -0.053 6.053 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.173 0.827 37 H 0.125 0.875 38 H 0.087 0.913 39 H 0.231 0.769 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.177 0.823 44 H 0.210 0.790 45 H 0.186 0.814 46 H 0.185 0.815 47 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -12.139 17.182 14.827 25.738 hybrid contribution -0.300 -0.857 -0.707 1.151 sum -12.439 16.326 14.120 24.912 Atomic orbital electron populations 1.22037 0.94264 1.02072 1.02574 1.21491 0.94886 0.95968 0.84281 0.91591 1.22835 1.02761 0.93706 0.96496 1.22615 0.92501 0.94946 0.93121 0.91222 1.59952 1.48947 1.06668 1.14409 1.21606 0.95917 0.88597 1.00646 1.20869 0.88134 0.82304 0.86076 1.90502 1.50382 1.63465 1.46563 1.41932 1.31643 1.06018 1.41485 1.19654 1.11874 0.91090 1.23577 0.90303 1.26007 1.00415 0.96291 0.98557 1.69663 1.39570 1.06968 1.39866 0.84954 0.77868 0.77447 0.78240 1.19735 1.19675 1.19801 1.22395 0.95247 0.88605 0.95214 1.48509 1.50653 1.30225 1.05037 1.17224 0.80673 0.85456 0.82490 1.90828 1.39751 1.30305 1.83196 1.22449 1.05729 1.03040 0.92821 1.21170 0.90491 0.91209 0.97827 1.20139 0.89384 1.03037 0.94253 1.22535 0.99691 0.98240 1.00290 1.21985 0.95986 1.05213 1.02079 1.24770 0.98679 0.90976 0.95884 1.84245 1.25524 1.47351 1.48184 0.93314 0.90091 0.92648 0.89627 0.88135 0.82714 0.87485 0.91349 0.76939 0.91351 0.90591 0.89327 0.82252 0.78970 0.81390 0.81523 0.76271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.07 71.98 0.65 -2.33 16 2 C 0.14 2.84 3.48 45.34 0.16 2.99 16 3 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.12 -2.17 5.97 31.78 0.19 -1.98 16 5 C 0.08 1.62 3.31 46.31 0.15 1.77 16 6 H 0.07 1.34 7.92 -2.39 -0.02 1.33 16 7 N -0.67 -18.32 6.00 -488.39 -2.93 -21.25 16 8 C 0.06 1.98 6.04 85.56 0.52 2.50 16 9 C 0.44 19.72 7.82 87.66 0.69 20.40 16 10 O -0.62 -33.05 15.78 -3.07 -0.05 -33.09 16 11 N -0.57 -28.28 5.29 -306.99 -1.62 -29.90 16 12 C -0.33 -18.42 9.68 84.04 0.81 -17.60 16 13 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 14 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 15 N -0.92 -48.57 13.05 21.66 0.28 -48.29 16 16 Si 0.99 42.17 29.55 68.60 2.03 44.20 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 18 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 20 C 0.11 2.21 6.10 86.85 0.53 2.74 16 21 N -0.61 -13.62 3.08 -798.59 -2.46 -16.08 16 22 C 0.55 13.71 7.19 85.06 0.61 14.32 16 23 O -0.56 -17.08 11.33 19.11 0.22 -16.86 16 24 C -0.22 -4.17 9.31 22.48 0.21 -3.97 16 25 C 0.01 0.21 9.95 22.50 0.22 0.43 16 26 C -0.02 -0.40 5.31 23.03 0.12 -0.28 16 27 C -0.19 -3.56 10.90 22.71 0.25 -3.32 16 28 C -0.23 -4.20 10.87 22.06 0.24 -3.96 16 29 C -0.03 -0.66 12.06 67.11 0.81 0.15 16 30 O -0.16 -4.03 7.83 17.57 0.14 -3.90 16 31 H 0.05 1.20 6.74 -2.39 -0.02 1.18 16 32 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.10 1.49 7.84 -2.39 -0.02 1.47 16 36 H 0.35 10.20 8.23 -89.69 -0.74 9.46 16 37 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 38 H 0.07 1.83 8.09 -2.39 -0.02 1.81 16 39 H 0.40 18.51 7.90 -92.70 -0.73 17.77 16 40 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 41 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.09 1.55 7.21 -2.38 -0.02 1.53 16 43 H 0.16 2.22 6.84 -2.91 -0.02 2.20 16 44 H 0.19 1.55 8.06 -2.91 -0.02 1.53 16 45 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 46 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 47 H 0.22 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -74.27 393.10 1.77 -72.50 By element: Atomic # 1 Polarization: 41.46 SS G_CDS: -0.46 Total: 41.00 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 6.63 Total: 11.66 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -6.73 Total: -115.52 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: 0.31 Total: -53.85 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -74.27 1.77 -72.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755667982.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.233 kcal (2) G-P(sol) polarization free energy of solvation -74.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds