Wall clock time and date at job start Wed Apr 1 2020 04:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47386 * 2 1 4 4 C 1.53002 * 109.46785 * 239.99629 * 2 1 3 5 5 N 1.46503 * 109.46791 * 185.00109 * 4 2 1 6 6 C 1.46765 * 124.34814 * 90.00749 * 5 4 2 7 7 C 1.54485 * 105.46916 * 197.01225 * 6 5 4 8 8 C 1.54629 * 101.76552 * 334.58397 * 7 6 5 9 9 C 1.34421 * 124.34598 * 269.69924 * 5 4 2 10 10 O 1.21279 * 124.94635 * 359.57889 * 9 5 4 11 11 N 1.46501 * 109.46860 * 120.00119 * 2 1 3 12 12 C 1.34780 * 119.99984 * 274.99174 * 11 2 1 13 13 O 1.21586 * 119.99878 * 0.02562 * 12 11 2 14 14 N 1.34774 * 119.99733 * 180.02562 * 12 11 2 15 15 C 1.39947 * 119.99683 * 174.53140 * 14 12 11 16 16 C 1.38958 * 120.03160 * 325.03827 * 15 14 12 17 17 C 1.38162 * 120.06567 * 180.27980 * 16 15 14 18 18 C 1.38163 * 120.13835 * 0.02562 * 17 16 15 19 19 C 1.38912 * 120.07016 * 359.97438 * 18 17 16 20 20 O 1.35749 * 120.03336 * 179.97438 * 19 18 17 21 21 C 1.34832 * 116.99776 * 185.67191 * 20 19 18 22 22 H 1.07995 * 120.00331 * 5.37884 * 21 20 19 23 23 C 1.38653 * 119.99871 * 185.38339 * 21 20 19 24 24 N 1.31566 * 119.99830 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00198 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47286 * 59.99776 * 25 23 21 27 27 H 1.48500 * 109.47286 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47116 * 299.99956 * 25 23 21 29 29 C 1.38704 * 120.03905 * 145.31929 * 15 14 12 30 30 H 1.08997 * 109.47215 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46751 * 299.99868 * 1 2 3 32 32 H 1.08999 * 109.47370 * 59.99801 * 1 2 3 33 33 H 1.08996 * 109.47118 * 305.00507 * 4 2 1 34 34 H 1.09003 * 109.46899 * 65.00289 * 4 2 1 35 35 H 1.08996 * 110.24157 * 316.00689 * 6 5 4 36 36 H 1.08996 * 110.24839 * 77.92623 * 6 5 4 37 37 H 1.09000 * 110.96699 * 92.70087 * 7 6 5 38 38 H 1.08998 * 110.96563 * 216.46002 * 7 6 5 39 39 H 1.08994 * 110.48520 * 143.47649 * 8 7 6 40 40 H 1.09009 * 110.48055 * 265.98633 * 8 7 6 41 41 H 0.97005 * 120.00159 * 95.00262 * 11 2 1 42 42 H 0.96999 * 120.00507 * 354.52767 * 14 12 11 43 43 H 1.07998 * 119.96731 * 0.27505 * 16 15 14 44 44 H 1.08002 * 119.92969 * 180.02562 * 17 16 15 45 45 H 1.08004 * 119.96599 * 179.97438 * 18 17 16 46 46 H 0.97003 * 119.99528 * 180.02562 * 24 23 21 47 47 H 1.08006 * 120.06627 * 359.69438 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.2257 -1.9490 -0.5844 7 6 5.6664 -1.4370 -0.3635 8 6 5.7779 -0.3341 -1.4416 9 6 4.3471 0.0899 -1.6902 10 8 4.0129 1.1094 -2.2556 11 7 2.0183 -0.6907 1.1962 12 6 2.1471 -0.0183 2.3572 13 8 1.8577 1.1614 2.4118 14 7 2.5968 -0.6536 3.4574 15 6 2.8395 0.0679 4.6318 16 6 3.3289 1.3665 4.5617 17 6 3.5742 2.0774 5.7207 18 6 3.3345 1.4996 6.9527 19 6 2.8454 0.2017 7.0294 20 8 2.6106 -0.3654 8.2402 21 6 2.2492 -1.6643 8.2480 22 1 2.2423 -2.2285 7.3271 23 6 1.8863 -2.2758 9.4383 24 7 1.8951 -1.5887 10.5603 25 14 1.3848 -4.0752 9.4491 26 1 2.5093 -4.9055 8.9475 27 1 1.0464 -4.4865 10.8353 28 1 0.2008 -4.2643 8.5731 29 6 2.5975 -0.5147 5.8671 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.6052 -1.7198 -1.2951 34 1 1.7516 -0.1584 -2.1370 35 1 3.7718 -2.2209 0.3686 36 1 4.2275 -2.8052 -1.2588 37 1 5.7827 -1.0185 0.6362 38 1 6.3934 -2.2298 -0.5398 39 1 6.3680 0.5038 -1.0705 40 1 6.2189 -0.7358 -2.3540 41 1 2.2490 -1.6319 1.1526 42 1 2.7522 -1.6108 3.4354 43 1 3.5176 1.8207 3.6002 44 1 3.9541 3.0867 5.6636 45 1 3.5277 2.0576 7.8570 46 1 1.6416 -2.0167 11.3930 47 1 2.2167 -1.5238 5.9242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077362357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:14 Heat of formation + Delta-G solvation = -54.327466 kcal Electronic energy + Delta-G solvation = -30423.739767 eV Core-core repulsion = 26186.704076 eV Total energy + Delta-G solvation = -4237.035690 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.94988 -40.22724 -38.80929 -37.16646 -36.56618 -35.75313 -34.21661 -32.80994 -32.22633 -30.90756 -29.16917 -28.30922 -27.95122 -26.63154 -25.30985 -23.09923 -22.35391 -21.79810 -21.35300 -20.43972 -19.81403 -18.70795 -17.87407 -17.45363 -17.12821 -16.83488 -16.48160 -15.48710 -15.35546 -15.08922 -14.82851 -14.56737 -14.27763 -14.22667 -14.09020 -13.96070 -13.73349 -13.57051 -13.35514 -13.03280 -12.96653 -12.71612 -12.49402 -12.37469 -12.16841 -11.88554 -11.76788 -11.54562 -11.47261 -11.36033 -11.13263 -10.93611 -10.80786 -10.48744 -10.10932 -10.03750 -9.65767 -9.46612 -9.37386 -8.98293 -8.80897 -7.70859 -7.13339 -6.45221 -4.05044 2.06700 2.26596 2.40377 2.52540 2.70056 3.09619 3.10956 3.14372 3.32202 3.94539 3.94964 4.04501 4.12644 4.34684 4.45869 4.59009 4.61621 4.68456 4.95197 4.97093 5.06753 5.09625 5.15309 5.23235 5.28998 5.30755 5.41908 5.45607 5.57566 5.66085 5.77163 5.94236 6.01286 6.09257 6.15695 6.25281 6.26772 6.35700 6.56082 6.72332 6.79150 7.01357 7.10413 7.27171 7.34730 7.43453 7.83598 7.84143 7.98380 8.01129 8.64019 8.99948 9.71216 10.72899 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.002450 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.555294 B =11426.821290 C =11812.446984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 H 0.094 0.906 4 C 0.119 3.881 5 N -0.617 5.617 6 C 0.103 3.897 7 C -0.133 4.133 8 C -0.155 4.155 9 C 0.518 3.482 10 O -0.530 6.530 11 N -0.740 5.740 12 C 0.704 3.296 13 O -0.567 6.567 14 N -0.683 5.683 15 C 0.199 3.801 16 C -0.203 4.203 17 C -0.063 4.063 18 C -0.202 4.202 19 C 0.169 3.831 20 O -0.176 6.176 21 C -0.392 4.392 22 H 0.089 0.911 23 C 0.039 3.961 24 N -0.863 5.863 25 Si 0.940 3.060 26 H -0.270 1.270 27 H -0.278 1.278 28 H -0.271 1.271 29 C -0.257 4.257 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.390 0.610 42 H 0.400 0.600 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.270 0.730 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.380 -5.581 -24.101 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.112 0.888 4 C -0.004 4.004 5 N -0.352 5.352 6 C -0.021 4.021 7 C -0.170 4.170 8 C -0.195 4.195 9 C 0.306 3.694 10 O -0.406 6.406 11 N -0.397 5.397 12 C 0.404 3.596 13 O -0.442 6.442 14 N -0.330 5.330 15 C 0.106 3.894 16 C -0.224 4.224 17 C -0.082 4.082 18 C -0.222 4.222 19 C 0.115 3.885 20 O -0.080 6.080 21 C -0.468 4.468 22 H 0.106 0.894 23 C -0.165 4.165 24 N -0.498 5.498 25 Si 0.765 3.235 26 H -0.196 1.196 27 H -0.203 1.203 28 H -0.196 1.196 29 C -0.279 4.279 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.224 0.776 42 H 0.234 0.766 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.136 0.864 46 H 0.080 0.920 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.811 -3.900 -23.930 24.544 hybrid contribution -0.258 -2.046 0.031 2.063 sum 3.553 -5.946 -23.900 24.883 Atomic orbital electron populations 1.22161 0.94506 1.02279 1.03299 1.21268 0.94194 0.98096 0.82687 0.88807 1.21769 0.78489 1.01837 0.98286 1.48206 1.05813 1.22457 1.58692 1.22141 0.92455 0.89113 0.98349 1.22598 0.95845 0.98647 0.99944 1.22325 0.95142 1.00937 1.01131 1.20949 0.88676 0.82530 0.77266 1.90742 1.82150 1.25010 1.42693 1.45231 1.72388 1.13267 1.08842 1.15902 0.78254 0.85309 0.80130 1.90966 1.55194 1.14100 1.83938 1.42586 1.69203 1.11179 1.10029 1.17150 0.96719 0.92133 0.83428 1.20529 1.08622 0.94853 0.98431 1.20524 0.97883 0.98373 0.91370 1.20239 1.09488 0.94620 0.97827 1.19061 0.92063 0.91786 0.85603 1.84024 1.74732 1.26294 1.22943 1.21204 1.46903 0.82937 0.95791 0.89369 1.25271 0.96673 1.00234 0.94316 1.70031 1.44389 1.36762 0.98569 0.85806 0.79138 0.80652 0.77943 1.19566 1.20278 1.19617 1.20774 1.13455 1.03114 0.90585 0.92357 0.91205 0.91401 0.89667 0.88292 0.90709 0.90826 0.89650 0.88983 0.87918 0.87876 0.77557 0.76554 0.86481 0.86680 0.86421 0.91976 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.48 37.16 0.35 -1.09 16 2 C 0.14 1.38 2.88 -67.93 -0.20 1.19 16 3 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 4 C 0.12 0.83 5.51 -4.04 -0.02 0.80 16 5 N -0.62 -4.68 2.75 -172.41 -0.47 -5.16 16 6 C 0.10 0.48 7.07 -3.12 -0.02 0.46 16 7 C -0.13 -0.63 7.18 -25.10 -0.18 -0.81 16 8 C -0.16 -1.02 6.86 -26.74 -0.18 -1.20 16 9 C 0.52 5.32 8.02 -10.86 -0.09 5.23 16 10 O -0.53 -7.77 17.59 5.56 0.10 -7.67 16 11 N -0.74 -7.29 4.51 -58.68 -0.26 -7.55 16 12 C 0.70 10.38 8.25 -86.92 -0.72 9.67 16 13 O -0.57 -10.89 13.80 5.29 0.07 -10.82 16 14 N -0.68 -9.98 5.34 -14.24 -0.08 -10.06 16 15 C 0.20 3.79 6.24 -83.71 -0.52 3.27 16 16 C -0.20 -3.96 8.66 -39.34 -0.34 -4.30 16 17 C -0.06 -1.20 10.03 -39.64 -0.40 -1.60 16 18 C -0.20 -4.36 9.99 -39.36 -0.39 -4.75 16 19 C 0.17 4.09 6.64 -39.14 -0.26 3.83 16 20 O -0.18 -5.00 9.76 0.05 0.00 -5.00 16 21 C -0.39 -10.75 9.44 30.89 0.29 -10.46 16 22 H 0.09 2.20 5.29 -52.49 -0.28 1.93 16 23 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 24 N -0.86 -25.11 13.67 55.48 0.76 -24.35 16 25 Si 0.94 20.03 29.55 -169.99 -5.02 15.00 16 26 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 27 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 28 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 29 C -0.26 -5.51 9.05 -39.21 -0.35 -5.87 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.10 0.74 7.92 -51.93 -0.41 0.33 16 35 H 0.07 0.29 5.95 -51.93 -0.31 -0.01 16 36 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 41 H 0.39 2.62 6.52 -40.82 -0.27 2.35 16 42 H 0.40 4.42 8.84 -40.82 -0.36 4.06 16 43 H 0.12 2.29 6.53 -52.49 -0.34 1.94 16 44 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 45 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 46 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.13 2.68 5.71 -52.48 -0.30 2.38 16 LS Contribution 391.12 15.07 5.89 5.89 Total: -1.00 -36.87 391.12 -8.59 -45.46 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -6.45 Total: 8.92 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -3.13 Total: -4.67 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.06 Total: -47.12 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.17 Total: -23.48 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.87 -8.59 -45.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077362357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.871 kcal (2) G-P(sol) polarization free energy of solvation -36.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds