Wall clock time and date at job start Wed Apr 1 2020 04:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47386 * 2 1 4 4 C 1.53002 * 109.46785 * 239.99629 * 2 1 3 5 5 N 1.46503 * 109.46791 * 185.00109 * 4 2 1 6 6 C 1.46765 * 124.34814 * 90.00749 * 5 4 2 7 7 C 1.54485 * 105.46916 * 197.01225 * 6 5 4 8 8 C 1.54629 * 101.76552 * 334.58397 * 7 6 5 9 9 C 1.34421 * 124.34598 * 269.69924 * 5 4 2 10 10 O 1.21279 * 124.94635 * 359.57889 * 9 5 4 11 11 N 1.46501 * 109.46860 * 120.00119 * 2 1 3 12 12 C 1.34780 * 119.99984 * 274.99174 * 11 2 1 13 13 O 1.21586 * 119.99878 * 0.02562 * 12 11 2 14 14 N 1.34774 * 119.99733 * 180.02562 * 12 11 2 15 15 C 1.39947 * 119.99683 * 174.53140 * 14 12 11 16 16 C 1.38958 * 120.03160 * 325.03827 * 15 14 12 17 17 C 1.38162 * 120.06567 * 180.27980 * 16 15 14 18 18 C 1.38163 * 120.13835 * 0.02562 * 17 16 15 19 19 C 1.38912 * 120.07016 * 359.97438 * 18 17 16 20 20 O 1.35749 * 120.03336 * 179.97438 * 19 18 17 21 21 C 1.34832 * 116.99776 * 185.67191 * 20 19 18 22 22 H 1.07995 * 120.00331 * 5.37884 * 21 20 19 23 23 C 1.38653 * 119.99871 * 185.38339 * 21 20 19 24 24 N 1.31566 * 119.99830 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00198 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47286 * 59.99776 * 25 23 21 27 27 H 1.48500 * 109.47286 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47116 * 299.99956 * 25 23 21 29 29 C 1.38704 * 120.03905 * 145.31929 * 15 14 12 30 30 H 1.08997 * 109.47215 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46751 * 299.99868 * 1 2 3 32 32 H 1.08999 * 109.47370 * 59.99801 * 1 2 3 33 33 H 1.08996 * 109.47118 * 305.00507 * 4 2 1 34 34 H 1.09003 * 109.46899 * 65.00289 * 4 2 1 35 35 H 1.08996 * 110.24157 * 316.00689 * 6 5 4 36 36 H 1.08996 * 110.24839 * 77.92623 * 6 5 4 37 37 H 1.09000 * 110.96699 * 92.70087 * 7 6 5 38 38 H 1.08998 * 110.96563 * 216.46002 * 7 6 5 39 39 H 1.08994 * 110.48520 * 143.47649 * 8 7 6 40 40 H 1.09009 * 110.48055 * 265.98633 * 8 7 6 41 41 H 0.97005 * 120.00159 * 95.00262 * 11 2 1 42 42 H 0.96999 * 120.00507 * 354.52767 * 14 12 11 43 43 H 1.07998 * 119.96731 * 0.27505 * 16 15 14 44 44 H 1.08002 * 119.92969 * 180.02562 * 17 16 15 45 45 H 1.08004 * 119.96599 * 179.97438 * 18 17 16 46 46 H 0.97003 * 119.99528 * 180.02562 * 24 23 21 47 47 H 1.08006 * 120.06627 * 359.69438 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.2257 -1.9490 -0.5844 7 6 5.6664 -1.4370 -0.3635 8 6 5.7779 -0.3341 -1.4416 9 6 4.3471 0.0899 -1.6902 10 8 4.0129 1.1094 -2.2556 11 7 2.0183 -0.6907 1.1962 12 6 2.1471 -0.0183 2.3572 13 8 1.8577 1.1614 2.4118 14 7 2.5968 -0.6536 3.4574 15 6 2.8395 0.0679 4.6318 16 6 3.3289 1.3665 4.5617 17 6 3.5742 2.0774 5.7207 18 6 3.3345 1.4996 6.9527 19 6 2.8454 0.2017 7.0294 20 8 2.6106 -0.3654 8.2402 21 6 2.2492 -1.6643 8.2480 22 1 2.2423 -2.2285 7.3271 23 6 1.8863 -2.2758 9.4383 24 7 1.8951 -1.5887 10.5603 25 14 1.3848 -4.0752 9.4491 26 1 2.5093 -4.9055 8.9475 27 1 1.0464 -4.4865 10.8353 28 1 0.2008 -4.2643 8.5731 29 6 2.5975 -0.5147 5.8671 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.6052 -1.7198 -1.2951 34 1 1.7516 -0.1584 -2.1370 35 1 3.7718 -2.2209 0.3686 36 1 4.2275 -2.8052 -1.2588 37 1 5.7827 -1.0185 0.6362 38 1 6.3934 -2.2298 -0.5398 39 1 6.3680 0.5038 -1.0705 40 1 6.2189 -0.7358 -2.3540 41 1 2.2490 -1.6319 1.1526 42 1 2.7522 -1.6108 3.4354 43 1 3.5176 1.8207 3.6002 44 1 3.9541 3.0867 5.6636 45 1 3.5277 2.0576 7.8570 46 1 1.6416 -2.0167 11.3930 47 1 2.2167 -1.5238 5.9242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077362357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:13 Heat of formation + Delta-G solvation = -80.728149 kcal Electronic energy + Delta-G solvation = -30424.884586 eV Core-core repulsion = 26186.704076 eV Total energy + Delta-G solvation = -4238.180510 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.88849 -41.28623 -40.45214 -38.49418 -37.64911 -36.75128 -35.65566 -34.23312 -33.53921 -31.80685 -30.78607 -29.86225 -28.47909 -27.30996 -27.22477 -24.31762 -23.48754 -22.84310 -22.45160 -21.72370 -20.55480 -20.11716 -19.44646 -19.04906 -17.83416 -17.62485 -17.33310 -16.91894 -16.79765 -16.38066 -16.13314 -15.89468 -15.69244 -15.48731 -15.30503 -14.98447 -14.80813 -14.59561 -14.46034 -14.19258 -13.98665 -13.70927 -13.53691 -13.31586 -13.17378 -13.05180 -12.90181 -12.75375 -12.60566 -12.46069 -12.37523 -12.13908 -12.13441 -11.85243 -11.50571 -11.33651 -11.11937 -10.88247 -10.71205 -10.31349 -9.68413 -9.32183 -8.84364 -8.44039 -6.12983 0.45427 0.71312 1.37756 1.47407 1.49314 1.53055 1.54546 2.01002 2.08424 2.20232 2.86492 3.10700 3.19279 3.42786 3.50935 3.62401 3.68289 4.00924 4.05395 4.12032 4.17177 4.25635 4.33338 4.44935 4.48256 4.57357 4.62408 4.64473 4.69812 4.73906 4.75727 4.88383 4.92562 5.03389 5.07881 5.12852 5.20214 5.22918 5.35484 5.41500 5.49054 5.56959 5.68405 5.69540 5.94893 6.03484 6.09024 6.20910 6.94622 7.00163 7.12568 7.46134 7.79955 8.78936 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.002450 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.555294 B =11426.821290 C =11812.446984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.147 3.853 3 H 0.050 0.950 4 C 0.122 3.878 5 N -0.615 5.615 6 C 0.097 3.903 7 C -0.126 4.126 8 C -0.153 4.153 9 C 0.501 3.499 10 O -0.588 6.588 11 N -0.714 5.714 12 C 0.702 3.298 13 O -0.613 6.613 14 N -0.671 5.671 15 C 0.210 3.790 16 C -0.199 4.199 17 C -0.052 4.052 18 C -0.216 4.216 19 C 0.137 3.863 20 O -0.226 6.226 21 C -0.413 4.413 22 H 0.105 0.895 23 C -0.024 4.024 24 N -0.922 5.922 25 Si 1.019 2.981 26 H -0.252 1.252 27 H -0.276 1.276 28 H -0.257 1.257 29 C -0.258 4.258 30 H 0.084 0.916 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.127 0.873 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.120 0.880 39 H 0.093 0.907 40 H 0.123 0.877 41 H 0.411 0.589 42 H 0.420 0.580 43 H 0.121 0.879 44 H 0.149 0.851 45 H 0.118 0.882 46 H 0.272 0.728 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.595 -8.803 -26.790 28.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.041 3.959 3 H 0.068 0.932 4 C 0.000 4.000 5 N -0.347 5.347 6 C -0.025 4.025 7 C -0.164 4.164 8 C -0.193 4.193 9 C 0.290 3.710 10 O -0.469 6.469 11 N -0.372 5.372 12 C 0.403 3.597 13 O -0.492 6.492 14 N -0.320 5.320 15 C 0.114 3.886 16 C -0.220 4.220 17 C -0.071 4.071 18 C -0.236 4.236 19 C 0.085 3.915 20 O -0.133 6.133 21 C -0.489 4.489 22 H 0.123 0.877 23 C -0.221 4.221 24 N -0.560 5.560 25 Si 0.838 3.162 26 H -0.176 1.176 27 H -0.201 1.201 28 H -0.182 1.182 29 C -0.280 4.280 30 H 0.103 0.897 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.145 0.855 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.139 0.861 39 H 0.112 0.888 40 H 0.141 0.859 41 H 0.249 0.751 42 H 0.258 0.742 43 H 0.139 0.861 44 H 0.167 0.833 45 H 0.136 0.864 46 H 0.081 0.919 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.048 -7.204 -26.691 27.941 hybrid contribution -0.268 -0.874 0.617 1.103 sum 3.780 -8.078 -26.075 27.558 Atomic orbital electron populations 1.22100 0.93559 1.03658 1.02307 1.21269 0.94877 0.96327 0.83465 0.93177 1.21815 0.78445 1.03568 0.96197 1.48386 1.06042 1.22610 1.57648 1.22451 0.91878 0.88722 0.99432 1.22630 0.96829 0.98553 0.98363 1.22363 0.92709 1.01433 1.02776 1.21672 0.90603 0.82070 0.76628 1.90702 1.83290 1.27468 1.45417 1.45003 1.70888 1.14046 1.07237 1.16057 0.77875 0.84843 0.80948 1.90945 1.57127 1.16400 1.84720 1.42375 1.68849 1.12034 1.08706 1.17114 0.95161 0.92157 0.84152 1.20773 1.07553 0.95071 0.98647 1.20869 0.96406 0.99684 0.90140 1.20443 1.09956 0.94151 0.99005 1.19561 0.93268 0.93056 0.85590 1.83994 1.76992 1.27092 1.25175 1.21790 1.46955 0.83295 0.96842 0.87731 1.26626 0.96305 1.05671 0.93514 1.70195 1.46908 1.39370 0.99494 0.84639 0.79482 0.73860 0.78189 1.17644 1.20106 1.18154 1.20792 1.13355 1.03168 0.90640 0.89685 0.94599 0.90053 0.85500 0.88881 0.89539 0.87820 0.91003 0.86135 0.88815 0.85877 0.75071 0.74169 0.86063 0.83288 0.86379 0.91889 0.85007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.48 71.98 0.68 -1.82 16 2 C 0.15 2.60 2.88 44.99 0.13 2.73 16 3 H 0.05 1.37 7.58 -2.39 -0.02 1.35 16 4 C 0.12 1.37 5.51 86.38 0.48 1.84 16 5 N -0.61 -7.77 2.75 -817.96 -2.25 -10.02 16 6 C 0.10 0.49 7.07 86.83 0.61 1.10 16 7 C -0.13 -0.77 7.18 31.65 0.23 -0.55 16 8 C -0.15 -1.75 6.86 30.59 0.21 -1.54 16 9 C 0.50 9.89 8.02 87.90 0.71 10.60 16 10 O -0.59 -17.80 17.59 -3.03 -0.05 -17.85 16 11 N -0.71 -12.26 4.51 -457.81 -2.06 -14.32 16 12 C 0.70 19.58 8.25 179.05 1.48 21.06 16 13 O -0.61 -23.38 13.80 -3.99 -0.06 -23.43 16 14 N -0.67 -18.13 5.34 -317.23 -1.70 -19.83 16 15 C 0.21 7.70 6.24 38.13 0.24 7.94 16 16 C -0.20 -7.52 8.66 22.42 0.19 -7.33 16 17 C -0.05 -1.96 10.03 22.23 0.22 -1.73 16 18 C -0.22 -9.46 9.99 22.41 0.22 -9.23 16 19 C 0.14 6.77 6.64 22.56 0.15 6.92 16 20 O -0.23 -13.38 9.76 -22.75 -0.22 -13.60 16 21 C -0.41 -23.21 9.44 67.92 0.64 -22.57 16 22 H 0.11 5.25 5.29 -2.91 -0.02 5.23 16 23 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 24 N -0.92 -55.79 13.67 21.61 0.30 -55.49 16 25 Si 1.02 40.95 29.55 68.60 2.03 42.98 16 26 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 27 H -0.28 -10.86 7.11 99.48 0.71 -10.16 16 28 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 29 C -0.26 -10.97 9.05 22.51 0.20 -10.77 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.09 1.24 7.92 -2.39 -0.02 1.22 16 35 H 0.09 0.25 5.95 -2.39 -0.01 0.23 16 36 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.41 3.77 6.52 -92.70 -0.60 3.16 16 42 H 0.42 7.91 8.84 -92.71 -0.82 7.10 16 43 H 0.12 4.57 6.53 -2.91 -0.02 4.56 16 44 H 0.15 4.49 8.06 -2.91 -0.02 4.46 16 45 H 0.12 5.05 8.06 -2.91 -0.02 5.02 16 46 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 47 H 0.13 5.43 5.71 -2.91 -0.02 5.41 16 Total: -1.00 -87.77 391.12 2.45 -85.32 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: -0.40 Total: 30.43 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 6.86 Total: -4.18 kcal Atomic # 7 Polarization: -93.95 SS G_CDS: -5.71 Total: -99.66 kcal Atomic # 8 Polarization: -54.56 SS G_CDS: -0.33 Total: -54.89 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -87.77 2.45 -85.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077362357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.587 kcal (2) G-P(sol) polarization free energy of solvation -87.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds