Wall clock time and date at job start Wed Apr 1 2020 04:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09004 * 109.47322 * 2 1 4 4 C 1.50703 * 109.47425 * 120.00001 * 2 1 3 5 5 H 1.08001 * 120.00321 * 120.00006 * 4 2 1 6 6 C 1.37878 * 119.99724 * 300.00510 * 4 2 1 7 7 N 1.31515 * 120.00292 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99778 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47093 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46854 * 119.99770 * 8 6 4 11 11 H 1.48494 * 109.47416 * 239.99865 * 8 6 4 12 12 N 1.46902 * 109.47526 * 240.00341 * 2 1 3 13 13 C 1.46894 * 111.00091 * 183.95630 * 12 2 1 14 14 C 1.46900 * 111.00066 * 59.99780 * 12 2 1 15 15 N 1.46497 * 109.47047 * 190.00469 * 14 12 2 16 16 N 1.40167 * 126.35377 * 269.97317 * 15 14 12 17 17 C 1.29415 * 108.13687 * 179.76550 * 16 15 14 18 18 N 1.37321 * 108.83322 * 0.40430 * 17 16 15 19 19 C 1.46495 * 125.83053 * 179.85020 * 18 17 16 20 20 C 1.53002 * 109.47244 * 264.69393 * 19 18 17 21 21 C 1.50702 * 109.47415 * 180.02562 * 20 19 18 22 22 C 1.38225 * 119.61833 * 124.99753 * 21 20 19 23 23 C 1.38635 * 119.15939 * 180.02562 * 22 21 20 24 24 C 1.38675 * 118.41956 * 0.02562 * 23 22 21 25 25 C 1.38186 * 119.16332 * 0.27967 * 24 23 22 26 26 N 1.31860 * 119.61626 * 305.02431 * 21 20 19 27 27 C 1.34821 * 108.34093 * 359.59051 * 18 17 16 28 28 S 1.71200 * 126.30233 * 180.20354 * 27 18 17 29 29 H 1.08996 * 109.47464 * 300.00115 * 1 2 3 30 30 H 1.09000 * 109.47093 * 59.99824 * 1 2 3 31 31 H 1.09004 * 109.47322 * 179.97438 * 1 2 3 32 32 H 0.96999 * 120.00254 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.47331 * 296.04012 * 13 12 2 34 34 H 1.09002 * 109.47627 * 56.04336 * 13 12 2 35 35 H 1.09009 * 109.46893 * 176.04445 * 13 12 2 36 36 H 1.08992 * 109.47130 * 70.00228 * 14 12 2 37 37 H 1.08998 * 109.46919 * 310.00372 * 14 12 2 38 38 H 1.08004 * 125.58635 * 180.27264 * 17 16 15 39 39 H 1.08997 * 109.47562 * 144.69435 * 19 18 17 40 40 H 1.09000 * 109.47258 * 24.69328 * 19 18 17 41 41 H 1.09003 * 109.47301 * 60.00081 * 20 19 18 42 42 H 1.09000 * 109.46940 * 300.00129 * 20 19 18 43 43 H 1.07997 * 120.42090 * 0.02562 * 22 21 20 44 44 H 1.07999 * 120.78848 * 179.97438 * 23 22 21 45 45 H 1.08002 * 120.41399 * 179.97438 * 24 23 22 46 46 H 1.07999 * 119.61418 * 179.70216 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9434 0.8301 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.1465 -2.2869 3.6037 10 1 3.1465 -0.1873 4.8164 11 1 1.1661 -1.5868 4.8161 12 7 2.0197 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1870 14 6 1.5487 -0.0263 -2.4211 15 7 1.8493 -0.8669 -3.5826 16 7 3.0215 -0.8346 -4.3505 17 6 2.9169 -1.7258 -5.2830 18 7 1.6993 -2.3496 -5.1654 19 6 1.1954 -3.4173 -6.0327 20 6 0.3201 -2.8113 -7.1317 21 6 -0.1987 -3.9097 -8.0236 22 6 -1.5595 -4.0357 -8.2311 23 6 -2.0265 -5.0498 -9.0529 24 6 -1.1031 -5.9034 -9.6375 25 6 0.2418 -5.7198 -9.3787 26 7 0.6506 -4.7397 -8.5966 27 6 1.0490 -1.8157 -4.1120 28 16 -0.5062 -2.2591 -3.5500 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.7093 1.1617 3.4844 33 1 3.9192 0.2044 -1.2300 34 1 3.8069 -1.2915 -0.2718 35 1 3.8163 -1.3721 -2.0500 36 1 2.0518 0.9346 -2.5280 37 1 0.4722 0.1325 -2.3564 38 1 3.6640 -1.9421 -6.0324 39 1 0.6041 -4.1169 -5.4419 40 1 2.0351 -3.9439 -6.4861 41 1 0.9113 -2.1118 -7.7227 42 1 -0.5196 -2.2847 -6.6783 43 1 -2.2502 -3.3527 -7.7589 44 1 -3.0843 -5.1726 -9.2329 45 1 -1.4314 -6.7047 -10.2830 46 1 0.9669 -6.3834 -9.8263 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103460308.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:44 Heat of formation + Delta-G solvation = 148.801469 kcal Electronic energy + Delta-G solvation = -27456.993584 eV Core-core repulsion = 23703.811847 eV Total energy + Delta-G solvation = -3753.181737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.60073 -40.57138 -37.48255 -35.93048 -33.62253 -32.87099 -32.56779 -32.03888 -29.66380 -29.09242 -27.36442 -25.36933 -24.67047 -23.89193 -23.74067 -22.68135 -22.31447 -21.74238 -19.72216 -18.11146 -17.29775 -16.78317 -16.49784 -16.43196 -16.10800 -15.96039 -15.67543 -15.15864 -14.86265 -14.64290 -14.14797 -14.02879 -13.91559 -13.71296 -13.28290 -12.88522 -12.78868 -12.51521 -12.17873 -11.98782 -11.97638 -11.52180 -11.35026 -11.04024 -11.00618 -10.87969 -10.80105 -10.71646 -10.42273 -10.24754 -10.11052 -10.00842 -9.94786 -9.82919 -9.35328 -8.92686 -8.43913 -7.50196 -7.34648 -7.18129 -6.02630 -4.07164 0.69057 0.89102 1.29472 1.53495 1.69683 2.56190 2.64697 3.30708 3.38740 3.38864 3.43145 3.84900 4.14236 4.28774 4.39011 4.43123 4.47838 4.61811 4.66596 4.71534 4.81206 4.89689 4.99483 5.10101 5.20081 5.29851 5.37412 5.40919 5.59602 5.65195 5.75783 5.80226 5.83686 6.06577 6.17931 6.27243 6.30489 6.48261 6.68746 6.84954 7.04977 7.10454 7.26947 7.46567 7.56402 7.61884 7.81077 8.11861 8.26125 8.46413 8.96919 9.57337 11.04087 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.021201 B = 0.002214 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.393090 B =12645.932413 C =13078.113563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.221 3.779 3 H 0.003 0.997 4 C -0.502 4.502 5 H 0.064 0.936 6 C 0.060 3.940 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.283 1.283 12 N -0.540 5.540 13 C 0.037 3.963 14 C 0.301 3.699 15 N -0.358 5.358 16 N -0.278 5.278 17 C 0.238 3.762 18 N -0.503 5.503 19 C 0.131 3.869 20 C -0.084 4.084 21 C 0.134 3.866 22 C -0.158 4.158 23 C -0.072 4.072 24 C -0.177 4.177 25 C 0.101 3.899 26 N -0.485 5.485 27 C 0.471 3.529 28 S -0.577 6.577 29 H 0.087 0.913 30 H 0.009 0.991 31 H 0.044 0.956 32 H 0.261 0.739 33 H 0.016 0.984 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.065 0.935 37 H 0.130 0.870 38 H 0.237 0.763 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.139 0.861 44 H 0.136 0.864 45 H 0.134 0.866 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.323 -8.887 -27.065 28.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.117 3.883 3 H 0.021 0.979 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.209 1.209 12 N -0.266 5.266 13 C -0.111 4.111 14 C 0.092 3.908 15 N -0.151 5.151 16 N -0.097 5.097 17 C -0.062 4.062 18 N -0.205 5.205 19 C 0.009 3.991 20 C -0.123 4.123 21 C -0.004 4.004 22 C -0.178 4.178 23 C -0.098 4.098 24 C -0.197 4.197 25 C -0.056 4.056 26 N -0.194 5.194 27 C 0.111 3.889 28 S -0.449 6.449 29 H 0.105 0.895 30 H 0.027 0.973 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.034 0.966 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.147 0.853 38 H 0.253 0.747 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.105 0.895 42 H 0.117 0.883 43 H 0.157 0.843 44 H 0.153 0.847 45 H 0.152 0.848 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.632 -8.560 -25.885 27.271 hybrid contribution 0.196 -0.182 -0.040 0.271 sum 0.829 -8.743 -25.925 27.372 Atomic orbital electron populations 1.21868 0.96758 1.00730 0.99843 1.19281 0.92898 0.91786 0.84379 0.97922 1.21090 1.31247 1.12345 0.89395 0.91771 1.24910 0.95130 0.95083 0.99009 1.69894 1.36696 1.22924 1.23461 0.86425 0.78599 0.79538 0.82757 1.19797 1.21168 1.20912 1.62033 1.10093 1.53011 1.01510 1.22255 0.87910 0.99173 1.01754 1.22531 1.03083 0.86953 0.78273 1.49817 1.09992 1.30314 1.25003 1.77187 1.06719 1.20648 1.05108 1.26455 0.89445 0.91216 0.99105 1.46345 1.14681 1.33537 1.25962 1.21837 1.00061 0.86976 0.90255 1.20862 1.01359 0.95485 0.94613 1.20892 0.90021 0.94609 0.94844 1.22073 0.96450 0.99645 0.99588 1.21643 1.00511 0.93433 0.94259 1.22169 0.94711 1.01001 1.01810 1.22726 0.94469 0.94359 0.94047 1.67428 1.39502 1.04070 1.08415 1.23867 0.94992 0.85499 0.84497 1.93366 1.00045 1.76070 1.75462 0.89462 0.97252 0.93656 0.92926 0.96563 0.89947 0.94070 0.91779 0.85287 0.74709 0.87276 0.87255 0.89469 0.88319 0.84280 0.84657 0.84787 0.82655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 8.76 37.15 0.33 -3.02 16 2 C 0.22 5.57 2.06 -68.87 -0.14 5.43 16 3 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 4 C -0.50 -13.75 7.88 -34.44 -0.27 -14.02 16 5 H 0.06 1.78 6.41 -52.49 -0.34 1.44 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -25.25 11.32 55.43 0.63 -24.62 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 N -0.54 -11.89 4.76 -240.20 -1.14 -13.04 16 13 C 0.04 0.76 9.15 60.06 0.55 1.31 16 14 C 0.30 5.72 5.76 -63.32 -0.36 5.36 16 15 N -0.36 -6.03 3.34 -65.00 -0.22 -6.25 16 16 N -0.28 -3.83 11.58 29.86 0.35 -3.48 16 17 C 0.24 2.31 12.65 -89.14 -1.13 1.18 16 18 N -0.50 -5.85 2.74 -119.22 -0.33 -6.17 16 19 C 0.13 1.19 5.68 -4.04 -0.02 1.16 16 20 C -0.08 -0.69 5.94 -27.88 -0.17 -0.86 16 21 C 0.13 1.14 6.18 -82.58 -0.51 0.63 16 22 C -0.16 -1.22 9.71 -39.44 -0.38 -1.61 16 23 C -0.07 -0.46 10.18 -39.27 -0.40 -0.86 16 24 C -0.18 -1.03 10.11 -39.44 -0.40 -1.43 16 25 C 0.10 0.68 11.18 -17.55 -0.20 0.49 16 26 N -0.48 -4.14 9.88 -9.47 -0.09 -4.23 16 27 C 0.47 7.73 7.86 -86.73 -0.68 7.04 16 28 S -0.58 -11.42 29.71 -107.50 -3.19 -14.62 16 29 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 30 H 0.01 0.20 6.20 -51.93 -0.32 -0.13 16 31 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 1.79 6.10 -51.93 -0.32 1.47 16 35 H 0.04 0.77 6.86 -51.92 -0.36 0.42 16 36 H 0.06 1.15 8.12 -51.93 -0.42 0.73 16 37 H 0.13 2.58 5.38 -51.93 -0.28 2.30 16 38 H 0.24 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.11 1.21 7.81 -51.93 -0.41 0.81 16 40 H 0.11 0.75 7.93 -51.93 -0.41 0.34 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.10 0.95 7.87 -51.93 -0.41 0.54 16 43 H 0.14 0.96 7.95 -52.49 -0.42 0.54 16 44 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 45 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 46 H 0.16 0.65 8.06 -52.49 -0.42 0.22 16 LS Contribution 392.40 15.07 5.91 5.91 Total: -1.00 -34.33 392.40 -13.50 -47.83 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.51 Total: -0.21 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -3.88 Total: 2.37 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.81 Total: -57.79 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -11.42 SS G_CDS: -3.19 Total: -14.62 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.33 -13.50 -47.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103460308.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.635 kcal (2) G-P(sol) polarization free energy of solvation -34.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds