Wall clock time and date at job start Wed Apr 1 2020 05:37:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09003 * 109.47026 * 2 1
4 4 N 1.46496 * 109.47081 * 240.00047 * 2 1 3
5 5 C 1.34777 * 120.00018 * 84.99174 * 4 2 1
6 6 O 1.21279 * 120.00275 * 0.02562 * 5 4 2
7 7 C 1.50707 * 120.00134 * 179.97438 * 5 4 2
8 8 C 1.52994 * 109.47078 * 180.02562 * 7 5 4
9 9 C 1.50707 * 109.46774 * 180.02562 * 8 7 5
10 10 O 1.21283 * 120.00097 * 354.45796 * 9 8 7
11 11 N 1.34775 * 119.99667 * 174.45902 * 9 8 7
12 12 C 1.46506 * 120.00030 * 184.45100 * 11 9 8
13 13 C 1.50707 * 109.47103 * 270.00389 * 12 11 9
14 14 H 1.07998 * 119.99957 * 0.02562 * 13 12 11
15 15 C 1.37875 * 119.99566 * 179.97438 * 13 12 11
16 16 N 1.31512 * 119.99583 * 180.02562 * 15 13 12
17 17 Si 1.86797 * 120.00402 * 0.02562 * 15 13 12
18 18 H 1.48493 * 109.47238 * 89.99541 * 17 15 13
19 19 H 1.48498 * 109.47115 * 210.00193 * 17 15 13
20 20 H 1.48506 * 109.46916 * 329.99775 * 17 15 13
21 21 C 1.39923 * 120.00153 * 4.45919 * 11 9 8
22 22 C 1.38872 * 120.07336 * 66.79372 * 21 11 9
23 23 C 1.38113 * 119.92646 * 179.97438 * 22 21 11
24 24 C 1.38284 * 120.07236 * 359.97313 * 23 22 21
25 25 C 1.38277 * 120.14310 * 0.04475 * 24 23 22
26 26 C 1.38117 * 120.06854 * 359.96101 * 25 24 23
27 27 C 1.50697 * 109.47452 * 119.99589 * 2 1 3
28 28 N 1.34767 * 120.00348 * 300.00512 * 27 2 1
29 29 O 1.21282 * 119.99707 * 120.00064 * 27 2 1
30 30 H 1.09010 * 109.46946 * 300.00045 * 1 2 3
31 31 H 1.09000 * 109.47653 * 59.99853 * 1 2 3
32 32 H 1.09000 * 109.47278 * 180.02562 * 1 2 3
33 33 H 0.97003 * 120.00423 * 265.00245 * 4 2 1
34 34 H 1.09004 * 109.46647 * 60.00234 * 7 5 4
35 35 H 1.09001 * 109.46925 * 300.01087 * 7 5 4
36 36 H 1.08998 * 109.47255 * 60.00377 * 8 7 5
37 37 H 1.08998 * 109.47196 * 299.99859 * 8 7 5
38 38 H 1.09001 * 109.46670 * 30.00181 * 12 11 9
39 39 H 1.08996 * 109.47328 * 150.00546 * 12 11 9
40 40 H 0.97000 * 120.00347 * 180.02562 * 16 15 13
41 41 H 1.07996 * 120.03472 * 359.70196 * 22 21 11
42 42 H 1.07998 * 119.96255 * 179.97438 * 23 22 21
43 43 H 1.08010 * 119.92736 * 180.02562 * 24 23 22
44 44 H 1.07999 * 119.96673 * 179.97438 * 25 24 23
45 45 H 1.07999 * 120.03237 * 179.97438 * 26 25 24
46 46 H 0.97000 * 119.99875 * 359.97438 * 28 27 2
47 47 H 0.96998 * 120.00128 * 180.02562 * 28 27 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6906 -1.1961
5 6 2.1469 -0.0183 -2.3572
6 8 1.8587 1.1585 -2.4116
7 6 2.6497 -0.7285 -3.5876
8 6 2.7015 0.2547 -4.7586
9 6 3.2038 -0.4558 -5.9891
10 8 3.5869 -1.6040 -5.9125
11 7 3.2273 0.1848 -7.1747
12 6 3.6229 -0.5344 -8.3882
13 6 5.1130 -0.4151 -8.5796
14 1 5.7060 0.1404 -7.8683
15 6 5.7191 -1.0161 -9.6624
16 7 7.0195 -0.9125 -9.8292
17 14 4.6934 -1.9776 -10.8924
18 1 4.2321 -1.0673 -11.9710
19 1 5.5163 -3.0649 -11.4803
20 1 3.5164 -2.5650 -10.2033
21 6 2.8741 1.5368 -7.2465
22 6 3.6728 2.4979 -6.6407
23 6 3.3216 3.8316 -6.7139
24 6 2.1763 4.2104 -7.3900
25 6 1.3787 3.2559 -7.9939
26 6 1.7243 1.9205 -7.9243
27 6 2.0324 -0.7103 1.2305
28 7 1.7068 -0.2499 2.4545
29 8 2.7297 -1.6964 1.1192
30 1 -0.3633 0.5139 0.8901
31 1 -0.3634 0.5138 -0.8899
32 1 -0.3634 -1.0277 0.0005
33 1 2.2490 -1.6318 -1.1527
34 1 1.9775 -1.5509 -3.8325
35 1 3.6491 -1.1203 -3.3979
36 1 3.3739 1.0768 -4.5134
37 1 1.7023 0.6467 -4.9483
38 1 3.3519 -1.5858 -8.2920
39 1 3.1105 -0.1043 -9.2488
40 1 7.4460 -1.3349 -10.5911
41 1 4.5652 2.2022 -6.1092
42 1 3.9421 4.5794 -6.2426
43 1 1.9041 5.2541 -7.4461
44 1 0.4846 3.5549 -8.5209
45 1 1.1007 1.1754 -8.3958
46 1 1.1494 0.5389 2.5435
47 1 2.0305 -0.7069 3.2465
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000108889489.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:37:49
Heat of formation + Delta-G solvation = -82.967525 kcal
Electronic energy + Delta-G solvation = -30099.592272 eV
Core-core repulsion = 25861.314656 eV
Total energy + Delta-G solvation = -4238.277616 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-40.67118 -40.00765 -39.20425 -38.10514 -35.29704 -34.96436 -34.27679 -32.94454
-32.43611 -30.80949 -30.57597 -29.57255 -27.92003 -25.81283 -24.59967 -22.58748
-22.39596 -21.82872 -20.81625 -20.44679 -18.95785 -18.43271 -17.76427 -16.95157
-16.90788 -16.26679 -16.25133 -15.85841 -15.72053 -15.46544 -15.31623 -14.89939
-14.34937 -14.19804 -14.03839 -13.99421 -13.69365 -13.15653 -13.13576 -12.90894
-12.83172 -12.57090 -12.40419 -12.27137 -12.05587 -11.90154 -11.72667 -11.32632
-11.17667 -10.89490 -10.82599 -10.56269 -10.44432 -10.23439 -10.18383 -9.98362
-9.56583 -9.41996 -9.38404 -8.66048 -8.59463 -8.58285 -7.68919 -6.07823
-4.06546 1.58225 1.67940 2.08329 2.48564 2.64791 3.18268 3.22081
3.27635 3.34994 3.37938 3.71708 4.06261 4.25293 4.39763 4.54322
4.64362 4.70859 4.99626 5.06983 5.17324 5.19403 5.20356 5.24626
5.26856 5.35665 5.38698 5.67885 5.69082 5.73396 5.84157 5.96878
6.02217 6.06876 6.14493 6.24257 6.28306 6.57607 6.67464 6.74876
6.75951 6.78259 6.92888 7.10154 7.27545 7.35307 7.58837 7.69210
8.04939 8.19463 8.45416 8.83353 8.95797 9.51287 11.05569
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.011724 B = 0.002661 C = 0.002313
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2387.692700 B =10518.752956 C =12104.005759
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.123 3.877
3 H 0.116 0.884
4 N -0.719 5.719
5 C 0.522 3.478
6 O -0.539 6.539
7 C -0.124 4.124
8 C -0.122 4.122
9 C 0.515 3.485
10 O -0.528 6.528
11 N -0.556 5.556
12 C 0.218 3.782
13 C -0.526 4.526
14 H 0.075 0.925
15 C 0.073 3.927
16 N -0.896 5.896
17 Si 0.873 3.127
18 H -0.275 1.275
19 H -0.283 1.283
20 H -0.264 1.264
21 C 0.161 3.839
22 C -0.116 4.116
23 C -0.107 4.107
24 C -0.132 4.132
25 C -0.111 4.111
26 C -0.128 4.128
27 C 0.515 3.485
28 N -0.850 5.850
29 O -0.535 6.535
30 H 0.070 0.930
31 H 0.078 0.922
32 H 0.064 0.936
33 H 0.412 0.588
34 H 0.102 0.898
35 H 0.107 0.893
36 H 0.099 0.901
37 H 0.094 0.906
38 H 0.044 0.956
39 H 0.028 0.972
40 H 0.265 0.735
41 H 0.124 0.876
42 H 0.122 0.878
43 H 0.118 0.882
44 H 0.121 0.879
45 H 0.122 0.878
46 H 0.404 0.596
47 H 0.405 0.595
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.571 7.559 20.134 27.150
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.014 3.986
3 H 0.134 0.866
4 N -0.374 5.374
5 C 0.309 3.691
6 O -0.416 6.416
7 C -0.164 4.164
8 C -0.163 4.163
9 C 0.303 3.697
10 O -0.404 6.404
11 N -0.284 5.284
12 C 0.099 3.901
13 C -0.564 4.564
14 H 0.094 0.906
15 C -0.129 4.129
16 N -0.534 5.534
17 Si 0.700 3.300
18 H -0.201 1.201
19 H -0.209 1.209
20 H -0.188 1.188
21 C 0.069 3.931
22 C -0.136 4.136
23 C -0.126 4.126
24 C -0.150 4.150
25 C -0.129 4.129
26 C -0.148 4.148
27 C 0.299 3.701
28 N -0.414 5.414
29 O -0.410 6.410
30 H 0.088 0.912
31 H 0.097 0.903
32 H 0.083 0.917
33 H 0.249 0.751
34 H 0.120 0.880
35 H 0.125 0.875
36 H 0.117 0.883
37 H 0.113 0.887
38 H 0.062 0.938
39 H 0.046 0.954
40 H 0.075 0.925
41 H 0.142 0.858
42 H 0.140 0.860
43 H 0.136 0.864
44 H 0.139 0.861
45 H 0.140 0.860
46 H 0.233 0.767
47 H 0.236 0.764
Dipole moment (debyes) X Y Z Total
from point charges -15.954 7.039 19.720 26.324
hybrid contribution -0.257 -0.643 -0.356 0.778
sum -16.211 6.396 19.364 26.051
Atomic orbital electron populations
1.22155 0.92732 1.03243 1.03744 1.20716 0.95745 0.98312 0.83790
0.86616 1.45811 1.68243 1.15032 1.08313 1.20870 0.76574 0.87217
0.84401 1.90698 1.49826 1.15932 1.85103 1.21385 1.04665 0.99232
0.91131 1.21411 1.04095 0.98850 0.91937 1.20411 0.78365 0.86913
0.84036 1.90688 1.46880 1.17962 1.84856 1.45601 1.65244 1.07924
1.09585 1.19797 0.96888 0.92719 0.80714 1.21248 0.90411 1.34239
1.10532 0.90646 1.24826 0.94854 0.95704 0.97527 1.69887 1.09061
1.44496 1.29972 0.86889 0.80904 0.80415 0.81811 1.20061 1.20868
1.18843 1.17679 0.93060 0.84300 0.98012 1.21363 0.98719 0.92618
1.00877 1.20983 0.96944 0.95415 0.99207 1.21062 0.95717 0.99152
0.99111 1.20933 0.99756 0.92487 0.99759 1.21249 0.96144 0.96537
1.00832 1.20681 0.79566 0.84367 0.85488 1.43764 1.55895 1.33922
1.07843 1.90783 1.37413 1.26197 1.86652 0.91161 0.90340 0.91668
0.75085 0.87993 0.87519 0.88264 0.88717 0.93795 0.95440 0.92543
0.85800 0.86039 0.86368 0.86147 0.85978 0.76740 0.76364
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -0.96 9.38 37.16 0.35 -0.61 16
2 C 0.12 0.98 2.98 -69.09 -0.21 0.78 16
3 H 0.12 0.94 7.58 -51.93 -0.39 0.55 16
4 N -0.72 -7.25 4.95 -54.93 -0.27 -7.52 16
5 C 0.52 6.46 7.79 -10.98 -0.09 6.38 16
6 O -0.54 -7.95 15.64 5.56 0.09 -7.86 16
7 C -0.12 -1.64 5.01 -27.88 -0.14 -1.78 16
8 C -0.12 -1.90 3.65 -27.88 -0.10 -2.00 16
9 C 0.51 10.40 7.53 -10.98 -0.08 10.32 16
10 O -0.53 -12.43 15.61 5.55 0.09 -12.34 16
11 N -0.56 -11.77 2.51 -114.73 -0.29 -12.06 16
12 C 0.22 5.39 4.14 -5.19 -0.02 5.37 16
13 C -0.53 -15.27 9.94 -34.44 -0.34 -15.61 16
14 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16
15 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16
16 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16
17 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16
18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16
19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16
20 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16
21 C 0.16 2.94 4.42 -83.69 -0.37 2.57 16
22 C -0.12 -1.96 8.46 -39.39 -0.33 -2.30 16
23 C -0.11 -1.50 10.04 -39.61 -0.40 -1.90 16
24 C -0.13 -1.69 10.04 -39.55 -0.40 -2.09 16
25 C -0.11 -1.47 10.04 -39.61 -0.40 -1.87 16
26 C -0.13 -2.02 9.64 -39.39 -0.38 -2.40 16
27 C 0.52 4.18 7.49 -10.99 -0.08 4.10 16
28 N -0.85 -3.31 8.77 31.22 0.27 -3.03 16
29 O -0.53 -6.59 16.67 5.56 0.09 -6.49 16
30 H 0.07 0.23 7.57 -51.92 -0.39 -0.17 16
31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16
32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16
33 H 0.41 4.00 7.79 -40.82 -0.32 3.68 16
34 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16
35 H 0.11 1.44 8.04 -51.93 -0.42 1.03 16
36 H 0.10 1.54 6.95 -51.93 -0.36 1.18 16
37 H 0.09 1.39 7.97 -51.93 -0.41 0.98 16
38 H 0.04 1.14 6.54 -51.93 -0.34 0.80 16
39 H 0.03 0.65 7.25 -51.93 -0.38 0.27 16
40 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16
41 H 0.12 2.15 7.90 -52.49 -0.41 1.73 16
42 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16
43 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16
44 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16
45 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16
46 H 0.40 0.40 8.25 -40.82 -0.34 0.06 16
47 H 0.41 1.26 8.93 -40.82 -0.36 0.89 16
LS Contribution 400.17 15.07 6.03 6.03
Total: -1.00 -38.15 400.17 -7.65 -45.80
By element:
Atomic # 1 Polarization: 13.24 SS G_CDS: -6.68 Total: 6.56 kcal
Atomic # 6 Polarization: 4.11 SS G_CDS: -3.09 Total: 1.02 kcal
Atomic # 7 Polarization: -50.19 SS G_CDS: 0.49 Total: -49.71 kcal
Atomic # 8 Polarization: -26.96 SS G_CDS: 0.27 Total: -26.70 kcal
Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal
Total LS contribution 6.03 Total: 6.03 kcal
Total: -38.15 -7.65 -45.80 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000108889489.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.163 kcal
(2) G-P(sol) polarization free energy of solvation -38.154 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.317 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.804 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.968 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds