Wall clock time and date at job start Wed Apr 1 2020 05:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 N 1.46497 * 109.47010 * 119.99087 * 2 1 3 5 5 C 1.34775 * 120.00355 * 275.00566 * 4 2 1 6 6 O 1.21279 * 120.00029 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00233 * 179.97438 * 5 4 2 8 8 C 1.53003 * 109.47476 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.46997 * 179.97438 * 8 7 5 10 10 O 1.21278 * 120.00149 * 5.32767 * 9 8 7 11 11 N 1.34774 * 119.99309 * 185.32561 * 9 8 7 12 12 C 1.46499 * 119.99721 * 185.21997 * 11 9 8 13 13 C 1.50705 * 109.47451 * 89.99963 * 12 11 9 14 14 H 1.08001 * 119.99432 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00281 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99821 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99814 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47137 * 60.00388 * 17 15 13 19 19 H 1.48500 * 109.46998 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47121 * 299.99937 * 17 15 13 21 21 C 1.39924 * 120.00496 * 5.21929 * 11 9 8 22 22 C 1.38880 * 120.07124 * 292.45977 * 21 11 9 23 23 C 1.38112 * 119.92745 * 179.74579 * 22 21 11 24 24 C 1.38285 * 120.07074 * 0.52961 * 23 22 21 25 25 C 1.38281 * 120.14234 * 359.74979 * 24 23 22 26 26 C 1.38121 * 120.07031 * 359.96993 * 25 24 23 27 27 C 1.50697 * 109.47293 * 239.99417 * 2 1 3 28 28 N 1.34772 * 119.99934 * 60.00428 * 27 2 1 29 29 O 1.21280 * 119.99932 * 239.99472 * 27 2 1 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47521 * 300.00314 * 1 2 3 32 32 H 1.09000 * 109.46666 * 60.00759 * 1 2 3 33 33 H 0.97007 * 119.99736 * 95.00126 * 4 2 1 34 34 H 1.09002 * 109.47199 * 299.99836 * 7 5 4 35 35 H 1.08997 * 109.47227 * 59.99489 * 7 5 4 36 36 H 1.09002 * 109.46856 * 300.00148 * 8 7 5 37 37 H 1.09000 * 109.46787 * 59.99832 * 8 7 5 38 38 H 1.09004 * 109.47307 * 209.99843 * 12 11 9 39 39 H 1.08996 * 109.47332 * 329.99759 * 12 11 9 40 40 H 0.97005 * 120.00010 * 179.97438 * 16 15 13 41 41 H 1.07998 * 120.03080 * 0.02562 * 22 21 11 42 42 H 1.07994 * 119.95955 * 180.27880 * 23 22 21 43 43 H 1.07995 * 119.92769 * 179.72525 * 24 23 22 44 44 H 1.08001 * 119.96603 * 180.02562 * 25 24 23 45 45 H 1.07995 * 120.03410 * 180.02562 * 26 25 24 46 46 H 0.97004 * 120.00433 * 359.97438 * 28 27 2 47 47 H 0.97005 * 119.99875 * 179.72450 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6904 1.1963 5 6 2.1470 -0.0180 2.3572 6 8 1.8580 1.1586 2.4117 7 6 2.6487 -0.7283 3.5879 8 6 2.7008 0.2550 4.7589 9 6 3.2020 -0.4556 5.9897 10 8 3.5805 -1.6054 5.9142 11 7 3.2296 0.1867 7.1742 12 6 3.8219 -0.4630 8.3460 13 6 5.2899 -0.1297 8.4169 14 1 5.7368 0.5032 7.6645 15 6 6.0622 -0.6319 9.4428 16 7 5.5178 -1.4021 10.3593 17 14 7.8816 -0.2181 9.5309 18 1 8.0498 1.2531 9.6423 19 1 8.4821 -0.8767 10.7187 20 1 8.5595 -0.7022 8.3016 21 6 2.6925 1.4740 7.2848 22 6 3.3016 2.5402 6.6360 23 6 2.7660 3.8088 6.7430 24 6 1.6308 4.0197 7.5039 25 6 1.0253 2.9612 8.1559 26 6 1.5526 1.6891 8.0483 27 6 2.0324 -0.7105 -1.2304 28 7 1.7069 -0.2501 -2.4545 29 8 2.7298 -1.6965 -1.1189 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 2.2491 -1.6316 1.1528 34 1 1.9758 -1.5501 3.8328 35 1 3.6478 -1.1209 3.3988 36 1 3.3740 1.0766 4.5137 37 1 1.7018 0.6479 4.9480 38 1 3.3247 -0.1077 9.2487 39 1 3.6981 -1.5429 8.2642 40 1 6.0612 -1.7557 11.0809 41 1 4.1905 2.3767 6.0449 42 1 3.2366 4.6375 6.2350 43 1 1.2165 5.0133 7.5896 44 1 0.1385 3.1291 8.7491 45 1 1.0790 0.8628 8.5573 46 1 1.1490 0.5384 -2.5436 47 1 2.0336 -0.7052 -3.2464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108889492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:53 Heat of formation + Delta-G solvation = -88.087005 kcal Electronic energy + Delta-G solvation = -30084.279619 eV Core-core repulsion = 25845.780005 eV Total energy + Delta-G solvation = -4238.499614 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.65342 -39.93192 -39.17619 -38.03437 -35.27666 -34.86120 -34.26808 -32.94203 -32.47090 -30.77730 -30.51688 -29.31837 -27.48124 -25.72577 -24.59297 -22.76319 -22.31621 -21.94562 -20.82173 -20.43372 -18.91459 -18.41838 -17.72845 -16.89342 -16.53186 -16.24022 -16.17260 -15.85981 -15.68117 -15.35040 -15.28600 -14.81749 -14.32670 -14.23073 -14.07025 -13.98516 -13.67654 -13.12262 -13.07373 -12.84603 -12.83444 -12.52116 -12.28275 -12.14485 -12.00690 -11.80845 -11.42384 -11.18245 -11.08513 -10.86948 -10.78174 -10.59875 -10.43620 -10.22905 -10.17611 -9.95283 -9.73715 -9.40152 -9.30791 -8.61245 -8.51127 -8.41991 -7.63900 -6.05317 -4.09979 1.64227 1.72570 2.09021 2.50803 2.66487 3.20135 3.29215 3.33132 3.36683 3.40862 3.83544 4.11159 4.26272 4.44690 4.56307 4.66981 4.73031 5.03110 5.11347 5.20965 5.23670 5.24288 5.29855 5.30455 5.38262 5.43215 5.69703 5.73130 5.78179 5.89114 6.01377 6.04810 6.13522 6.17495 6.25032 6.33433 6.67178 6.75534 6.80100 6.86747 7.01356 7.24859 7.29534 7.38316 7.50160 7.69825 7.90177 8.07191 8.19310 8.35966 8.84196 8.99272 9.54499 11.02963 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010836 B = 0.002687 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.405946 B =10416.349441 C =12050.621452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.123 3.877 3 H 0.116 0.884 4 N -0.719 5.719 5 C 0.522 3.478 6 O -0.539 6.539 7 C -0.124 4.124 8 C -0.124 4.124 9 C 0.515 3.485 10 O -0.532 6.532 11 N -0.561 5.561 12 C 0.247 3.753 13 C -0.527 4.527 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.894 5.894 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.164 3.836 22 C -0.120 4.120 23 C -0.108 4.108 24 C -0.135 4.135 25 C -0.110 4.110 26 C -0.125 4.125 27 C 0.515 3.485 28 N -0.850 5.850 29 O -0.535 6.535 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.412 0.588 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.035 0.965 39 H 0.049 0.951 40 H 0.264 0.736 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.404 0.596 47 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.488 8.086 -20.769 26.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.014 3.986 3 H 0.134 0.866 4 N -0.374 5.374 5 C 0.309 3.691 6 O -0.416 6.416 7 C -0.164 4.164 8 C -0.164 4.164 9 C 0.303 3.697 10 O -0.409 6.409 11 N -0.289 5.289 12 C 0.129 3.871 13 C -0.566 4.566 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.726 3.274 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.201 1.201 21 C 0.072 3.928 22 C -0.140 4.140 23 C -0.127 4.127 24 C -0.153 4.153 25 C -0.129 4.129 26 C -0.145 4.145 27 C 0.299 3.701 28 N -0.414 5.414 29 O -0.411 6.411 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.249 0.751 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.233 0.767 47 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -12.979 7.520 -20.296 25.237 hybrid contribution 1.098 0.069 -0.250 1.129 sum -11.881 7.589 -20.546 24.918 Atomic orbital electron populations 1.22155 0.92728 1.03253 1.03742 1.20716 0.95760 0.98294 0.83793 0.86638 1.45817 1.68266 1.15025 1.08320 1.20890 0.76557 0.87223 0.84401 1.90696 1.49801 1.15970 1.85102 1.21384 1.04592 0.99280 0.91130 1.21449 1.04082 0.98782 0.92113 1.20361 0.78464 0.86766 0.84129 1.90673 1.47892 1.17273 1.85075 1.45940 1.57241 1.13699 1.12016 1.19431 0.92859 0.94298 0.80489 1.21336 0.93664 1.31094 1.10475 0.92448 1.24908 0.98824 0.94858 0.95364 1.69919 1.36364 1.33265 1.13736 0.86545 0.84757 0.78527 0.77555 1.20193 1.21132 1.20122 1.17719 0.92312 0.85502 0.97309 1.21351 0.99368 0.92120 1.01178 1.20958 0.96299 0.96396 0.99052 1.21042 0.96861 0.98671 0.98708 1.20944 0.99953 0.92376 0.99636 1.21277 0.95392 0.97662 1.00172 1.20687 0.79553 0.84364 0.85488 1.43769 1.55786 1.34040 1.07842 1.90780 1.37432 1.26194 1.86653 0.91660 0.90322 0.91177 0.75095 0.87992 0.87608 0.88377 0.88844 0.94746 0.93285 0.92608 0.85966 0.86194 0.86467 0.86177 0.85866 0.76739 0.76377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 9.38 37.16 0.35 -0.64 16 2 C 0.12 1.00 2.98 -69.08 -0.21 0.80 16 3 H 0.12 0.95 7.58 -51.93 -0.39 0.56 16 4 N -0.72 -7.39 4.95 -54.93 -0.27 -7.66 16 5 C 0.52 6.59 7.79 -10.99 -0.09 6.51 16 6 O -0.54 -8.08 15.64 5.56 0.09 -7.99 16 7 C -0.12 -1.68 5.00 -27.88 -0.14 -1.81 16 8 C -0.12 -1.97 3.50 -27.88 -0.10 -2.07 16 9 C 0.51 10.68 7.57 -10.99 -0.08 10.59 16 10 O -0.53 -12.81 15.54 5.56 0.09 -12.72 16 11 N -0.56 -12.25 2.51 -114.73 -0.29 -12.54 16 12 C 0.25 6.52 5.15 -5.19 -0.03 6.49 16 13 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 16 14 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 15 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 16 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 17 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.16 3.06 4.43 -83.69 -0.37 2.69 16 22 C -0.12 -2.03 8.45 -39.39 -0.33 -2.37 16 23 C -0.11 -1.53 10.04 -39.61 -0.40 -1.93 16 24 C -0.13 -1.76 10.04 -39.55 -0.40 -2.16 16 25 C -0.11 -1.53 10.04 -39.61 -0.40 -1.93 16 26 C -0.13 -2.09 9.66 -39.39 -0.38 -2.47 16 27 C 0.52 4.24 7.49 -10.99 -0.08 4.15 16 28 N -0.85 -3.38 8.77 31.22 0.27 -3.11 16 29 O -0.53 -6.64 16.67 5.56 0.09 -6.54 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.24 7.56 -51.93 -0.39 -0.16 16 33 H 0.41 4.08 7.79 -40.82 -0.32 3.76 16 34 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.11 1.46 8.04 -51.93 -0.42 1.04 16 36 H 0.10 1.55 6.86 -51.93 -0.36 1.19 16 37 H 0.09 1.43 7.82 -51.93 -0.41 1.03 16 38 H 0.03 0.93 7.84 -51.93 -0.41 0.52 16 39 H 0.05 1.43 7.36 -51.93 -0.38 1.05 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.12 2.06 7.55 -52.49 -0.40 1.66 16 42 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 43 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 44 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 45 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 46 H 0.40 0.44 8.25 -40.82 -0.34 0.10 16 47 H 0.40 1.28 8.93 -40.82 -0.36 0.92 16 LS Contribution 402.98 15.07 6.07 6.07 Total: -1.00 -36.98 402.98 -7.98 -44.96 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.68 Total: 6.20 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -3.07 Total: 2.19 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 0.45 Total: -49.24 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: 0.27 Total: -27.25 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.98 -7.98 -44.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108889492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.125 kcal (2) G-P(sol) polarization free energy of solvation -36.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds