Wall clock time and date at job start Wed Apr 1 2020 05:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 N 1.46497 * 109.47010 * 119.99087 * 2 1 3 5 5 C 1.34775 * 120.00355 * 275.00566 * 4 2 1 6 6 O 1.21279 * 120.00029 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00233 * 179.97438 * 5 4 2 8 8 C 1.53003 * 109.47476 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.46997 * 179.97438 * 8 7 5 10 10 O 1.21278 * 120.00149 * 5.32767 * 9 8 7 11 11 N 1.34774 * 119.99309 * 185.32561 * 9 8 7 12 12 C 1.46499 * 119.99721 * 185.21997 * 11 9 8 13 13 C 1.50705 * 109.47451 * 89.99963 * 12 11 9 14 14 H 1.08001 * 119.99432 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00281 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99821 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99814 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47137 * 60.00388 * 17 15 13 19 19 H 1.48500 * 109.46998 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47121 * 299.99937 * 17 15 13 21 21 C 1.39924 * 120.00496 * 5.21929 * 11 9 8 22 22 C 1.38880 * 120.07124 * 292.45977 * 21 11 9 23 23 C 1.38112 * 119.92745 * 179.74579 * 22 21 11 24 24 C 1.38285 * 120.07074 * 0.52961 * 23 22 21 25 25 C 1.38281 * 120.14234 * 359.74979 * 24 23 22 26 26 C 1.38121 * 120.07031 * 359.96993 * 25 24 23 27 27 C 1.50697 * 109.47293 * 239.99417 * 2 1 3 28 28 N 1.34772 * 119.99934 * 60.00428 * 27 2 1 29 29 O 1.21280 * 119.99932 * 239.99472 * 27 2 1 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47521 * 300.00314 * 1 2 3 32 32 H 1.09000 * 109.46666 * 60.00759 * 1 2 3 33 33 H 0.97007 * 119.99736 * 95.00126 * 4 2 1 34 34 H 1.09002 * 109.47199 * 299.99836 * 7 5 4 35 35 H 1.08997 * 109.47227 * 59.99489 * 7 5 4 36 36 H 1.09002 * 109.46856 * 300.00148 * 8 7 5 37 37 H 1.09000 * 109.46787 * 59.99832 * 8 7 5 38 38 H 1.09004 * 109.47307 * 209.99843 * 12 11 9 39 39 H 1.08996 * 109.47332 * 329.99759 * 12 11 9 40 40 H 0.97005 * 120.00010 * 179.97438 * 16 15 13 41 41 H 1.07998 * 120.03080 * 0.02562 * 22 21 11 42 42 H 1.07994 * 119.95955 * 180.27880 * 23 22 21 43 43 H 1.07995 * 119.92769 * 179.72525 * 24 23 22 44 44 H 1.08001 * 119.96603 * 180.02562 * 25 24 23 45 45 H 1.07995 * 120.03410 * 180.02562 * 26 25 24 46 46 H 0.97004 * 120.00433 * 359.97438 * 28 27 2 47 47 H 0.97005 * 119.99875 * 179.72450 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6904 1.1963 5 6 2.1470 -0.0180 2.3572 6 8 1.8580 1.1586 2.4117 7 6 2.6487 -0.7283 3.5879 8 6 2.7008 0.2550 4.7589 9 6 3.2020 -0.4556 5.9897 10 8 3.5805 -1.6054 5.9142 11 7 3.2296 0.1867 7.1742 12 6 3.8219 -0.4630 8.3460 13 6 5.2899 -0.1297 8.4169 14 1 5.7368 0.5032 7.6645 15 6 6.0622 -0.6319 9.4428 16 7 5.5178 -1.4021 10.3593 17 14 7.8816 -0.2181 9.5309 18 1 8.0498 1.2531 9.6423 19 1 8.4821 -0.8767 10.7187 20 1 8.5595 -0.7022 8.3016 21 6 2.6925 1.4740 7.2848 22 6 3.3016 2.5402 6.6360 23 6 2.7660 3.8088 6.7430 24 6 1.6308 4.0197 7.5039 25 6 1.0253 2.9612 8.1559 26 6 1.5526 1.6891 8.0483 27 6 2.0324 -0.7105 -1.2304 28 7 1.7069 -0.2501 -2.4545 29 8 2.7298 -1.6965 -1.1189 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 2.2491 -1.6316 1.1528 34 1 1.9758 -1.5501 3.8328 35 1 3.6478 -1.1209 3.3988 36 1 3.3740 1.0766 4.5137 37 1 1.7018 0.6479 4.9480 38 1 3.3247 -0.1077 9.2487 39 1 3.6981 -1.5429 8.2642 40 1 6.0612 -1.7557 11.0809 41 1 4.1905 2.3767 6.0449 42 1 3.2366 4.6375 6.2350 43 1 1.2165 5.0133 7.5896 44 1 0.1385 3.1291 8.7491 45 1 1.0790 0.8628 8.5573 46 1 1.1490 0.5384 -2.5436 47 1 2.0336 -0.7052 -3.2464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108889492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:52 Heat of formation + Delta-G solvation = -115.973105 kcal Electronic energy + Delta-G solvation = -30085.488851 eV Core-core repulsion = 25845.780005 eV Total energy + Delta-G solvation = -4239.708846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.64326 -41.23532 -40.11474 -39.43406 -36.56567 -36.09390 -34.86512 -34.83377 -33.94823 -31.84806 -31.44957 -30.80471 -29.24442 -26.98131 -25.57478 -24.50715 -23.56991 -23.28621 -21.62625 -21.29898 -20.38465 -19.17203 -18.78358 -18.64372 -17.91935 -17.46867 -17.22980 -17.13088 -16.82938 -16.61326 -16.26428 -16.11795 -15.96203 -15.44301 -15.30261 -14.92333 -14.61152 -14.51037 -14.27002 -14.23533 -14.00313 -13.57587 -13.53949 -13.43680 -13.32160 -13.07823 -12.97978 -12.67180 -12.64726 -12.40746 -12.27502 -12.11084 -12.07530 -11.74234 -11.16403 -11.00806 -10.97104 -10.74499 -10.67386 -10.25560 -10.07070 -9.79638 -9.22013 -8.25403 -6.40457 0.39812 0.53601 1.34523 1.38825 1.43876 1.45942 1.53509 1.66165 1.81000 2.23430 2.39285 2.58865 2.90494 3.04334 3.45389 3.78201 3.84023 3.95543 4.00811 4.07744 4.10947 4.14640 4.15116 4.33743 4.53858 4.62577 4.64249 4.69116 4.76462 4.79318 4.81288 4.91691 5.01004 5.12099 5.18067 5.19844 5.30797 5.42624 5.55907 5.64921 5.67664 5.77751 5.81344 5.99977 6.09956 6.32860 6.37793 6.63753 6.71293 7.09454 7.20614 7.21773 7.35018 8.81759 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010836 B = 0.002687 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.405946 B =10416.349441 C =12050.621452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.120 3.880 3 H 0.118 0.882 4 N -0.713 5.713 5 C 0.530 3.470 6 O -0.562 6.562 7 C -0.121 4.121 8 C -0.103 4.103 9 C 0.507 3.493 10 O -0.577 6.577 11 N -0.564 5.564 12 C 0.265 3.735 13 C -0.544 4.544 14 H 0.052 0.948 15 C 0.010 3.990 16 N -0.926 5.926 17 Si 0.968 3.032 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.274 1.274 21 C 0.125 3.875 22 C -0.134 4.134 23 C -0.105 4.105 24 C -0.121 4.121 25 C -0.104 4.104 26 C -0.142 4.142 27 C 0.517 3.483 28 N -0.825 5.825 29 O -0.583 6.583 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.414 0.586 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.019 0.981 39 H 0.008 0.992 40 H 0.268 0.732 41 H 0.113 0.887 42 H 0.151 0.849 43 H 0.159 0.841 44 H 0.153 0.847 45 H 0.114 0.886 46 H 0.421 0.579 47 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.311 11.248 -22.420 28.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.012 3.988 3 H 0.136 0.864 4 N -0.366 5.366 5 C 0.318 3.682 6 O -0.441 6.441 7 C -0.162 4.162 8 C -0.143 4.143 9 C 0.298 3.702 10 O -0.457 6.457 11 N -0.291 5.291 12 C 0.145 3.855 13 C -0.582 4.582 14 H 0.070 0.930 15 C -0.189 4.189 16 N -0.566 5.566 17 Si 0.792 3.208 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.200 1.200 21 C 0.035 3.965 22 C -0.153 4.153 23 C -0.123 4.123 24 C -0.138 4.138 25 C -0.123 4.123 26 C -0.161 4.161 27 C 0.301 3.699 28 N -0.390 5.390 29 O -0.463 6.463 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.251 0.749 34 H 0.127 0.873 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.037 0.963 39 H 0.026 0.974 40 H 0.077 0.923 41 H 0.132 0.868 42 H 0.169 0.831 43 H 0.177 0.823 44 H 0.171 0.829 45 H 0.132 0.868 46 H 0.253 0.747 47 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -13.858 10.744 -22.013 28.143 hybrid contribution 1.243 -0.837 0.228 1.515 sum -12.615 9.907 -21.785 27.054 Atomic orbital electron populations 1.22133 0.90893 1.03533 1.04705 1.20929 0.97110 0.97964 0.82825 0.86404 1.45770 1.67306 1.15117 1.08437 1.20498 0.76416 0.86710 0.84607 1.90680 1.51207 1.16713 1.85492 1.21326 1.04739 0.99021 0.91075 1.21288 1.04131 0.98656 0.90252 1.21228 0.77547 0.86392 0.85079 1.90634 1.49956 1.19253 1.85841 1.45786 1.57190 1.15144 1.10977 1.18845 0.92513 0.92204 0.81972 1.21587 0.94782 1.31257 1.10599 0.92954 1.25841 1.03744 0.94505 0.94836 1.70041 1.38230 1.34010 1.14287 0.85466 0.78682 0.78974 0.77727 1.18763 1.20063 1.19970 1.17988 0.93999 0.84369 1.00179 1.21389 0.99486 0.92972 1.01472 1.21339 0.96456 0.95774 0.98719 1.21545 0.95636 1.00184 0.96471 1.21329 1.00585 0.91079 0.99276 1.21381 0.95346 0.99127 1.00291 1.20674 0.79050 0.83729 0.86469 1.43579 1.54672 1.34041 1.06723 1.90769 1.39814 1.28349 1.87334 0.91710 0.91785 0.87778 0.74876 0.87349 0.88085 0.87960 0.87919 0.96271 0.97374 0.92268 0.86847 0.83115 0.82314 0.82938 0.86804 0.74712 0.75479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.38 71.98 0.68 -0.92 16 2 C 0.12 1.79 2.98 44.25 0.13 1.92 16 3 H 0.12 1.75 7.58 -2.39 -0.02 1.73 16 4 N -0.71 -14.41 4.95 -446.10 -2.21 -16.61 16 5 C 0.53 13.32 7.79 87.66 0.68 14.00 16 6 O -0.56 -16.44 15.64 -3.03 -0.05 -16.49 16 7 C -0.12 -3.39 5.00 29.85 0.15 -3.24 16 8 C -0.10 -3.39 3.50 29.85 0.10 -3.29 16 9 C 0.51 22.33 7.57 87.66 0.66 23.00 16 10 O -0.58 -29.71 15.54 -3.02 -0.05 -29.76 16 11 N -0.56 -26.13 2.51 -635.30 -1.59 -27.72 16 12 C 0.26 14.95 5.15 85.63 0.44 15.39 16 13 C -0.54 -32.40 9.39 25.60 0.24 -32.16 16 14 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 15 C 0.01 0.59 5.46 84.66 0.46 1.05 16 16 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 17 Si 0.97 45.90 29.54 68.60 2.03 47.92 16 18 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 21 C 0.13 4.82 4.43 38.15 0.17 4.98 16 22 C -0.13 -4.46 8.45 22.39 0.19 -4.27 16 23 C -0.10 -2.65 10.04 22.25 0.22 -2.43 16 24 C -0.12 -2.66 10.04 22.29 0.22 -2.44 16 25 C -0.10 -2.61 10.04 22.25 0.22 -2.39 16 26 C -0.14 -4.75 9.66 22.39 0.22 -4.53 16 27 C 0.52 7.81 7.49 87.66 0.66 8.46 16 28 N -0.83 -4.63 8.77 -173.54 -1.52 -6.15 16 29 O -0.58 -14.29 16.67 -3.03 -0.05 -14.34 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 0.35 7.56 -2.39 -0.02 0.33 16 33 H 0.41 8.26 7.79 -92.70 -0.72 7.53 16 34 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.10 2.92 8.04 -2.39 -0.02 2.90 16 36 H 0.10 3.29 6.86 -2.39 -0.02 3.28 16 37 H 0.10 3.19 7.82 -2.39 -0.02 3.17 16 38 H 0.02 1.12 7.84 -2.38 -0.02 1.10 16 39 H 0.01 0.52 7.36 -2.39 -0.02 0.50 16 40 H 0.27 15.47 8.31 -92.70 -0.77 14.69 16 41 H 0.11 3.88 7.55 -2.91 -0.02 3.86 16 42 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 43 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 44 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 45 H 0.11 3.89 8.06 -2.91 -0.02 3.87 16 46 H 0.42 -0.43 8.25 -92.71 -0.76 -1.19 16 47 H 0.41 1.70 8.93 -92.70 -0.83 0.87 16 Total: -1.00 -84.90 402.98 1.01 -83.89 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -1.29 Total: 22.86 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 5.45 Total: 13.14 kcal Atomic # 7 Polarization: -102.18 SS G_CDS: -5.04 Total: -107.22 kcal Atomic # 8 Polarization: -60.45 SS G_CDS: -0.14 Total: -60.59 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -84.90 1.01 -83.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108889492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.079 kcal (2) G-P(sol) polarization free energy of solvation -84.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds