Wall clock time and date at job start Wed Apr 1 2020 04:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35832 * 117.00227 * 2 1 4 4 C 1.38976 * 119.89866 * 0.02562 * 3 2 1 5 5 C 1.37818 * 120.18776 * 179.97438 * 4 3 2 6 6 C 1.39403 * 119.98824 * 0.02562 * 5 4 3 7 7 C 1.48219 * 120.10014 * 179.97438 * 6 5 4 8 8 N 1.30858 * 126.42686 * 180.02562 * 7 6 5 9 9 O 1.21290 * 110.07654 * 179.97438 * 8 7 6 10 10 C 1.33674 * 110.04932 * 359.97438 * 9 8 7 11 11 C 1.50696 * 126.43205 * 179.73324 * 10 9 8 12 12 N 1.46900 * 109.47553 * 270.03193 * 11 10 9 13 13 C 1.46903 * 110.99994 * 66.04023 * 12 11 10 14 14 C 1.46895 * 111.00027 * 189.99825 * 12 11 10 15 15 H 1.09002 * 109.47197 * 299.99189 * 14 12 11 16 16 C 1.53000 * 109.47579 * 59.99592 * 14 12 11 17 17 C 1.50708 * 109.46954 * 179.97438 * 14 12 11 18 18 H 1.07997 * 119.99916 * 359.97438 * 17 14 12 19 19 C 1.37876 * 119.99803 * 179.97438 * 17 14 12 20 20 N 1.31509 * 119.99833 * 179.97438 * 19 17 14 21 21 Si 1.86805 * 120.00081 * 0.02562 * 19 17 14 22 22 H 1.48499 * 109.47064 * 89.99844 * 21 19 17 23 23 H 1.48499 * 109.46722 * 209.99942 * 21 19 17 24 24 H 1.48498 * 109.47124 * 329.99603 * 21 19 17 25 25 N 1.30971 * 107.14246 * 0.02562 * 10 9 8 26 26 C 1.39907 * 119.80521 * 0.25552 * 6 5 4 27 27 O 1.35786 * 120.09415 * 179.72428 * 26 6 5 28 28 C 1.42895 * 117.00028 * 179.97438 * 27 26 6 29 29 C 1.38468 * 119.80648 * 359.46519 * 26 6 5 30 30 H 1.09002 * 109.47226 * 299.99887 * 1 2 3 31 31 H 1.09005 * 109.47297 * 59.99968 * 1 2 3 32 32 H 1.09002 * 109.47271 * 179.97438 * 1 2 3 33 33 H 1.07998 * 119.90479 * 359.97438 * 4 3 2 34 34 H 1.08000 * 120.00143 * 180.02562 * 5 4 3 35 35 H 1.09007 * 109.46781 * 30.02910 * 11 10 9 36 36 H 1.08996 * 109.47345 * 150.02639 * 11 10 9 37 37 H 1.08998 * 109.47060 * 60.00363 * 13 12 11 38 38 H 1.08999 * 109.46748 * 180.02562 * 13 12 11 39 39 H 1.09005 * 109.47209 * 300.00055 * 13 12 11 40 40 H 1.08992 * 109.47125 * 300.00487 * 16 14 12 41 41 H 1.09004 * 109.46449 * 59.99619 * 16 14 12 42 42 H 1.08990 * 109.47315 * 179.97438 * 16 14 12 43 43 H 0.97005 * 120.00516 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.47518 * 179.97438 * 28 27 26 45 45 H 1.09008 * 109.46905 * 299.99799 * 28 27 26 46 46 H 1.08999 * 109.47360 * 59.99319 * 28 27 26 47 47 H 1.08008 * 119.99450 * 180.25903 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2867 2.3745 0.0005 5 6 1.9062 3.6056 0.0011 6 6 3.2980 3.6852 0.0005 7 6 3.9669 5.0079 0.0005 8 7 5.2571 5.2262 -0.0004 9 8 5.4776 6.4189 -0.0006 10 6 4.3261 7.0978 -0.0004 11 6 4.1710 8.5967 0.0051 12 7 4.1185 9.0786 1.3919 13 6 5.4000 8.8573 2.0750 14 6 3.7324 10.4950 1.4427 15 1 4.4618 11.0903 0.8934 16 6 2.3505 10.6701 0.8098 17 6 3.6887 10.9525 2.8780 18 1 3.9238 10.2601 3.6729 19 6 3.3487 12.2549 3.1764 20 7 3.3101 12.6540 4.4288 21 14 2.9414 13.4523 1.8015 22 1 1.4854 13.3998 1.5146 23 1 3.3149 14.8282 2.2168 24 1 3.7004 13.0806 0.5805 25 7 3.3579 6.2158 0.0006 26 6 4.0616 2.5129 -0.0060 27 8 5.4176 2.5837 -0.0122 28 6 6.1318 1.3460 -0.0180 29 6 3.4306 1.2804 -0.0006 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 0.2084 2.3143 0.0005 34 1 1.3135 4.5084 0.0019 35 1 5.0198 9.0517 -0.5056 36 1 3.2492 8.8685 -0.5091 37 1 6.1897 9.3933 1.5485 38 1 5.3333 9.2226 3.0998 39 1 5.6278 7.7913 2.0838 40 1 2.3817 10.3391 -0.2281 41 1 1.6213 10.0747 1.3593 42 1 2.0640 11.7210 0.8480 43 1 3.0704 13.5702 4.6389 44 1 7.2035 1.5449 -0.0231 45 1 5.8725 0.7727 0.8721 46 1 5.8641 0.7762 -0.9078 47 1 4.0172 0.3735 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123718564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:09 Heat of formation + Delta-G solvation = 50.838232 kcal Electronic energy + Delta-G solvation = -30187.048025 eV Core-core repulsion = 25954.572662 eV Total energy + Delta-G solvation = -4232.475363 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.19410 -40.81230 -39.30642 -37.56166 -37.04249 -35.34117 -33.33396 -32.20277 -31.04435 -30.39795 -29.89192 -27.90138 -27.73793 -27.52481 -24.84488 -24.49414 -23.97618 -22.59235 -22.27116 -21.00008 -19.68172 -19.00919 -17.79162 -17.56449 -17.08970 -16.75414 -16.51698 -16.28774 -15.91230 -15.82052 -15.60258 -15.11535 -14.43801 -14.35968 -14.19032 -14.00868 -13.47315 -13.18435 -13.09255 -12.81094 -12.74180 -12.67992 -12.27322 -12.20061 -12.07468 -11.83885 -11.81375 -11.63091 -11.34414 -11.20565 -11.01713 -10.87696 -10.75796 -10.67841 -10.56786 -10.18443 -9.93371 -9.52991 -9.11511 -8.91271 -8.61307 -8.17903 -7.60208 -6.11150 -4.11109 0.68176 1.06904 1.55304 2.57073 2.72644 3.00849 3.12500 3.24034 3.32384 3.36010 3.53709 3.66456 4.14425 4.35084 4.46547 4.66151 4.69629 4.71752 4.73172 4.76659 4.88902 4.91917 5.04542 5.14172 5.20147 5.25323 5.29388 5.32272 5.47790 5.53981 5.71275 5.91133 5.93533 6.01975 6.05841 6.16464 6.19603 6.29932 6.33812 6.37794 6.48298 6.69786 6.83676 6.87008 7.07867 7.16433 7.44881 7.73818 7.87301 8.45486 8.55191 8.94741 9.48968 11.01293 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017024 B = 0.002293 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.306029 B =12208.105949 C =13142.729402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.182 3.818 4 C -0.248 4.248 5 C 0.005 3.995 6 C -0.086 4.086 7 C 0.213 3.787 8 N -0.364 5.364 9 O 0.072 5.928 10 C 0.207 3.793 11 C 0.133 3.867 12 N -0.519 5.519 13 C 0.030 3.970 14 C 0.185 3.815 15 H 0.005 0.995 16 C -0.150 4.150 17 C -0.508 4.508 18 H 0.085 0.915 19 C 0.072 3.928 20 N -0.896 5.896 21 Si 0.886 3.114 22 H -0.277 1.277 23 H -0.297 1.297 24 H -0.268 1.268 25 N -0.468 5.468 26 C 0.198 3.802 27 O -0.287 6.287 28 C 0.023 3.977 29 C -0.250 4.250 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.138 0.862 34 H 0.148 0.852 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.022 0.978 38 H 0.092 0.908 39 H 0.043 0.957 40 H 0.031 0.969 41 H 0.065 0.935 42 H 0.045 0.955 43 H 0.265 0.735 44 H 0.103 0.897 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.407 -23.947 -12.381 26.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.227 6.227 3 C 0.135 3.865 4 C -0.267 4.267 5 C -0.015 4.015 6 C -0.089 4.089 7 C -0.056 4.056 8 N -0.071 5.071 9 O 0.012 5.988 10 C -0.014 4.014 11 C 0.003 3.997 12 N -0.246 5.246 13 C -0.118 4.118 14 C 0.079 3.921 15 H 0.023 0.977 16 C -0.208 4.208 17 C -0.546 4.546 18 H 0.103 0.897 19 C -0.130 4.130 20 N -0.534 5.534 21 Si 0.716 3.284 22 H -0.204 1.204 23 H -0.224 1.224 24 H -0.193 1.193 25 N -0.202 5.202 26 C 0.149 3.851 27 O -0.198 6.198 28 C -0.072 4.072 29 C -0.270 4.270 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.155 0.845 34 H 0.166 0.834 35 H 0.082 0.918 36 H 0.137 0.863 37 H 0.041 0.959 38 H 0.110 0.890 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.121 0.879 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.380 -24.848 -12.005 27.630 hybrid contribution 0.062 1.146 -0.968 1.501 sum -1.318 -23.702 -12.973 27.052 Atomic orbital electron populations 1.23141 0.77745 1.04172 1.01935 1.86040 1.21948 1.26838 1.87919 1.18804 0.91456 0.84289 0.91977 1.21089 1.00508 0.91507 1.13551 1.20871 0.91721 0.98217 0.90680 1.16539 0.91962 0.85483 1.14919 1.23487 0.86563 0.93529 1.02066 1.75049 1.17439 0.93910 1.20737 1.85308 1.35063 1.12702 1.65680 1.28789 0.79464 0.99012 0.94162 1.20740 1.03977 0.80266 0.94716 1.61972 1.30639 1.22322 1.09626 1.22385 0.88731 0.98947 1.01754 1.19747 0.92143 0.82028 0.98213 0.97710 1.22266 1.00230 1.00348 0.97911 1.20916 1.47167 0.96453 0.90112 0.89736 1.24910 0.94919 0.97899 0.95318 1.69868 1.48421 1.17787 1.17339 0.86888 0.78773 0.80044 0.82675 1.20419 1.22443 1.19296 1.71968 1.30177 0.97662 1.20378 1.18582 0.83098 0.91843 0.91581 1.86327 1.14281 1.32246 1.86936 1.23164 0.97255 0.85336 1.01447 1.20213 0.92668 0.97145 1.16929 0.92122 0.92219 0.88054 0.84474 0.83400 0.91774 0.86254 0.95900 0.88963 0.93773 0.95033 0.91609 0.93696 0.92498 0.87865 0.92354 0.92443 0.84011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.86 10.49 -19.21 -0.20 -3.07 16 3 C 0.18 1.89 6.69 -39.15 -0.26 1.63 16 4 C -0.25 -2.49 9.02 -39.46 -0.36 -2.84 16 5 C 0.01 0.06 9.69 -39.30 -0.38 -0.32 16 6 C -0.09 -1.26 5.89 -104.74 -0.62 -1.87 16 7 C 0.21 3.62 7.77 -156.08 -1.21 2.41 16 8 N -0.36 -6.38 10.69 30.98 0.33 -6.05 16 9 O 0.07 1.23 10.71 18.02 0.19 1.42 16 10 C 0.21 3.50 7.06 -12.98 -0.09 3.41 16 11 C 0.13 2.17 5.40 -4.98 -0.03 2.15 16 12 N -0.52 -10.40 4.61 -237.73 -1.10 -11.49 16 13 C 0.03 0.57 9.09 60.07 0.55 1.12 16 14 C 0.19 4.15 1.65 -68.86 -0.11 4.04 16 15 H 0.01 0.12 7.20 -51.93 -0.37 -0.25 16 16 C -0.15 -3.11 8.47 37.16 0.31 -2.79 16 17 C -0.51 -13.67 8.46 -34.44 -0.29 -13.96 16 18 H 0.08 2.49 6.65 -52.49 -0.35 2.14 16 19 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 20 N -0.90 -26.67 13.96 55.43 0.77 -25.90 16 21 Si 0.89 21.08 24.37 -169.99 -4.14 16.94 16 22 H -0.28 -6.44 6.87 56.52 0.39 -6.06 16 23 H -0.30 -7.14 7.11 56.52 0.40 -6.73 16 24 H -0.27 -6.03 6.53 56.52 0.37 -5.66 16 25 N -0.47 -8.19 11.25 -9.87 -0.11 -8.30 16 26 C 0.20 2.59 6.69 -38.87 -0.26 2.33 16 27 O -0.29 -3.74 8.83 -19.07 -0.17 -3.91 16 28 C 0.02 0.18 9.81 101.05 0.99 1.18 16 29 C -0.25 -2.72 8.96 -39.34 -0.35 -3.07 16 30 H 0.06 0.28 7.65 -51.93 -0.40 -0.11 16 31 H 0.06 0.26 7.65 -51.93 -0.40 -0.13 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.14 1.01 6.27 -52.49 -0.33 0.68 16 34 H 0.15 1.75 7.87 -52.49 -0.41 1.34 16 35 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 36 H 0.12 1.83 5.83 -51.93 -0.30 1.53 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 1.96 6.10 -51.93 -0.32 1.65 16 39 H 0.04 0.79 6.82 -51.93 -0.35 0.44 16 40 H 0.03 0.54 6.20 -51.93 -0.32 0.22 16 41 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.04 0.97 3.27 -51.93 -0.17 0.80 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.40 7.65 -51.92 -0.40 0.00 16 46 H 0.06 0.37 7.67 -51.93 -0.40 -0.02 16 47 H 0.14 1.24 6.29 -52.48 -0.33 0.91 16 LS Contribution 377.46 15.07 5.69 5.69 Total: -1.00 -32.75 377.46 -6.10 -38.85 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -6.15 Total: -0.60 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -1.22 Total: -3.58 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.10 Total: -51.74 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.18 Total: -5.56 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.14 Total: 16.94 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.75 -6.10 -38.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123718564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.690 kcal (2) G-P(sol) polarization free energy of solvation -32.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds