Wall clock time and date at job start Wed Apr 1 2020 04:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35832 * 117.00227 * 2 1 4 4 C 1.38976 * 119.89866 * 0.02562 * 3 2 1 5 5 C 1.37818 * 120.18776 * 179.97438 * 4 3 2 6 6 C 1.39403 * 119.98824 * 0.02562 * 5 4 3 7 7 C 1.48219 * 120.10014 * 179.97438 * 6 5 4 8 8 N 1.30858 * 126.42686 * 180.02562 * 7 6 5 9 9 O 1.21290 * 110.07654 * 179.97438 * 8 7 6 10 10 C 1.33674 * 110.04932 * 359.97438 * 9 8 7 11 11 C 1.50696 * 126.43205 * 179.73324 * 10 9 8 12 12 N 1.46900 * 109.47553 * 270.03193 * 11 10 9 13 13 C 1.46903 * 110.99994 * 66.04023 * 12 11 10 14 14 C 1.46895 * 111.00027 * 189.99825 * 12 11 10 15 15 H 1.09002 * 109.47197 * 299.99189 * 14 12 11 16 16 C 1.53000 * 109.47579 * 59.99592 * 14 12 11 17 17 C 1.50708 * 109.46954 * 179.97438 * 14 12 11 18 18 H 1.07997 * 119.99916 * 359.97438 * 17 14 12 19 19 C 1.37876 * 119.99803 * 179.97438 * 17 14 12 20 20 N 1.31509 * 119.99833 * 179.97438 * 19 17 14 21 21 Si 1.86805 * 120.00081 * 0.02562 * 19 17 14 22 22 H 1.48499 * 109.47064 * 89.99844 * 21 19 17 23 23 H 1.48499 * 109.46722 * 209.99942 * 21 19 17 24 24 H 1.48498 * 109.47124 * 329.99603 * 21 19 17 25 25 N 1.30971 * 107.14246 * 0.02562 * 10 9 8 26 26 C 1.39907 * 119.80521 * 0.25552 * 6 5 4 27 27 O 1.35786 * 120.09415 * 179.72428 * 26 6 5 28 28 C 1.42895 * 117.00028 * 179.97438 * 27 26 6 29 29 C 1.38468 * 119.80648 * 359.46519 * 26 6 5 30 30 H 1.09002 * 109.47226 * 299.99887 * 1 2 3 31 31 H 1.09005 * 109.47297 * 59.99968 * 1 2 3 32 32 H 1.09002 * 109.47271 * 179.97438 * 1 2 3 33 33 H 1.07998 * 119.90479 * 359.97438 * 4 3 2 34 34 H 1.08000 * 120.00143 * 180.02562 * 5 4 3 35 35 H 1.09007 * 109.46781 * 30.02910 * 11 10 9 36 36 H 1.08996 * 109.47345 * 150.02639 * 11 10 9 37 37 H 1.08998 * 109.47060 * 60.00363 * 13 12 11 38 38 H 1.08999 * 109.46748 * 180.02562 * 13 12 11 39 39 H 1.09005 * 109.47209 * 300.00055 * 13 12 11 40 40 H 1.08992 * 109.47125 * 300.00487 * 16 14 12 41 41 H 1.09004 * 109.46449 * 59.99619 * 16 14 12 42 42 H 1.08990 * 109.47315 * 179.97438 * 16 14 12 43 43 H 0.97005 * 120.00516 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.47518 * 179.97438 * 28 27 26 45 45 H 1.09008 * 109.46905 * 299.99799 * 28 27 26 46 46 H 1.08999 * 109.47360 * 59.99319 * 28 27 26 47 47 H 1.08008 * 119.99450 * 180.25903 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2867 2.3745 0.0005 5 6 1.9062 3.6056 0.0011 6 6 3.2980 3.6852 0.0005 7 6 3.9669 5.0079 0.0005 8 7 5.2571 5.2262 -0.0004 9 8 5.4776 6.4189 -0.0006 10 6 4.3261 7.0978 -0.0004 11 6 4.1710 8.5967 0.0051 12 7 4.1185 9.0786 1.3919 13 6 5.4000 8.8573 2.0750 14 6 3.7324 10.4950 1.4427 15 1 4.4618 11.0903 0.8934 16 6 2.3505 10.6701 0.8098 17 6 3.6887 10.9525 2.8780 18 1 3.9238 10.2601 3.6729 19 6 3.3487 12.2549 3.1764 20 7 3.3101 12.6540 4.4288 21 14 2.9414 13.4523 1.8015 22 1 1.4854 13.3998 1.5146 23 1 3.3149 14.8282 2.2168 24 1 3.7004 13.0806 0.5805 25 7 3.3579 6.2158 0.0006 26 6 4.0616 2.5129 -0.0060 27 8 5.4176 2.5837 -0.0122 28 6 6.1318 1.3460 -0.0180 29 6 3.4306 1.2804 -0.0006 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 0.2084 2.3143 0.0005 34 1 1.3135 4.5084 0.0019 35 1 5.0198 9.0517 -0.5056 36 1 3.2492 8.8685 -0.5091 37 1 6.1897 9.3933 1.5485 38 1 5.3333 9.2226 3.0998 39 1 5.6278 7.7913 2.0838 40 1 2.3817 10.3391 -0.2281 41 1 1.6213 10.0747 1.3593 42 1 2.0640 11.7210 0.8480 43 1 3.0704 13.5702 4.6389 44 1 7.2035 1.5449 -0.0231 45 1 5.8725 0.7727 0.8721 46 1 5.8641 0.7762 -0.9078 47 1 4.0172 0.3735 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123718564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:08 Heat of formation + Delta-G solvation = 25.992178 kcal Electronic energy + Delta-G solvation = -30188.125431 eV Core-core repulsion = 25954.572662 eV Total energy + Delta-G solvation = -4233.552769 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -46.47656 -41.61968 -40.05631 -39.15345 -37.93035 -36.53760 -35.04705 -33.76715 -32.04913 -31.81138 -30.96728 -29.34659 -28.33295 -28.17889 -26.71174 -25.81965 -25.30255 -23.72379 -23.20366 -22.15901 -21.33410 -19.79046 -19.10937 -18.97449 -18.52113 -17.86042 -17.37258 -17.21377 -16.98983 -16.93175 -16.48540 -16.11023 -15.85461 -15.82156 -15.63553 -15.08051 -14.74536 -14.49042 -14.24750 -13.98936 -13.90073 -13.80205 -13.52182 -13.34924 -13.23070 -12.99235 -12.76474 -12.63782 -12.54074 -12.52569 -12.42478 -12.32822 -12.09594 -12.00486 -11.90689 -11.75409 -11.39764 -11.16286 -10.95141 -10.69293 -9.74492 -9.17289 -9.08819 -8.23767 -6.28250 -0.31939 0.22364 0.31512 1.37408 1.40914 1.41728 1.51911 1.81763 2.04772 2.30764 2.36778 2.52930 2.61941 2.99011 3.08977 3.20651 3.64897 3.80412 4.00184 4.11175 4.11677 4.22003 4.31424 4.33446 4.37386 4.39074 4.41395 4.42183 4.47964 4.57268 4.61640 4.68056 4.68692 4.77536 4.78495 4.83215 4.88861 4.98988 5.05954 5.14302 5.18568 5.26463 5.38228 5.44142 5.66922 5.93488 6.15648 6.19307 6.30623 6.59665 6.78318 7.18778 7.36029 8.92489 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017024 B = 0.002293 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.306029 B =12208.105949 C =13142.729402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.322 6.322 3 C 0.187 3.813 4 C -0.241 4.241 5 C 0.001 3.999 6 C -0.126 4.126 7 C 0.212 3.788 8 N -0.381 5.381 9 O 0.068 5.932 10 C 0.205 3.795 11 C 0.137 3.863 12 N -0.538 5.538 13 C 0.038 3.962 14 C 0.189 3.811 15 H 0.012 0.988 16 C -0.148 4.148 17 C -0.509 4.509 18 H 0.040 0.960 19 C 0.011 3.989 20 N -0.950 5.950 21 Si 0.949 3.051 22 H -0.266 1.266 23 H -0.303 1.303 24 H -0.239 1.239 25 N -0.482 5.482 26 C 0.191 3.809 27 O -0.315 6.315 28 C 0.015 3.985 29 C -0.252 4.252 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.124 0.876 33 H 0.166 0.834 34 H 0.147 0.853 35 H 0.093 0.907 36 H 0.135 0.865 37 H 0.038 0.962 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.039 0.961 43 H 0.265 0.735 44 H 0.115 0.885 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.474 -25.454 -15.146 29.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.235 6.235 3 C 0.140 3.860 4 C -0.259 4.259 5 C -0.019 4.019 6 C -0.129 4.129 7 C -0.057 4.057 8 N -0.091 5.091 9 O 0.010 5.990 10 C -0.016 4.016 11 C 0.008 3.992 12 N -0.264 5.264 13 C -0.110 4.110 14 C 0.082 3.918 15 H 0.030 0.970 16 C -0.205 4.205 17 C -0.547 4.547 18 H 0.058 0.942 19 C -0.186 4.186 20 N -0.590 5.590 21 Si 0.776 3.224 22 H -0.192 1.192 23 H -0.231 1.231 24 H -0.163 1.163 25 N -0.216 5.216 26 C 0.142 3.858 27 O -0.227 6.227 28 C -0.079 4.079 29 C -0.271 4.271 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.142 0.858 33 H 0.184 0.816 34 H 0.164 0.836 35 H 0.111 0.889 36 H 0.153 0.847 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.133 0.867 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.440 -26.387 -14.794 30.350 hybrid contribution 0.372 1.346 -0.039 1.397 sum -2.068 -25.041 -14.834 29.178 Atomic orbital electron populations 1.23490 0.75638 1.06096 1.02878 1.86049 1.24104 1.25975 1.87354 1.18935 0.91513 0.84973 0.90629 1.21342 1.01911 0.90485 1.12188 1.20940 0.90959 0.99162 0.90831 1.16841 0.93094 0.85018 1.17937 1.23969 0.86459 0.94360 1.00939 1.75034 1.17960 0.94001 1.22058 1.85279 1.35086 1.12707 1.65901 1.28891 0.79479 0.99208 0.94034 1.20837 1.06040 0.79776 0.92591 1.61792 1.31167 1.21027 1.12414 1.22235 0.89183 0.99444 1.00134 1.19573 0.93638 0.83370 0.95215 0.97008 1.22181 0.98236 0.99897 1.00173 1.21181 1.45825 0.95806 0.91890 0.94179 1.25800 0.95000 1.00030 0.97758 1.70039 1.50633 1.18334 1.20025 0.85855 0.79422 0.76833 0.80298 1.19168 1.23129 1.16266 1.71963 1.30619 0.98114 1.20865 1.18691 0.83314 0.92111 0.91667 1.86282 1.14522 1.34889 1.86969 1.23444 0.97488 0.84214 1.02779 1.20402 0.93286 0.97014 1.16408 0.91330 0.91061 0.85822 0.81642 0.83554 0.88895 0.84724 0.94311 0.92247 0.92981 0.90783 0.92789 0.94271 0.92582 0.86714 0.91183 0.90849 0.82111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.21 16 2 O -0.32 -4.98 10.49 -91.66 -0.96 -5.94 16 3 C 0.19 3.51 6.69 22.55 0.15 3.66 16 4 C -0.24 -4.36 9.02 22.35 0.20 -4.16 16 5 C 0.00 0.02 9.69 22.45 0.22 0.24 16 6 C -0.13 -3.67 5.89 -19.94 -0.12 -3.79 16 7 C 0.21 7.25 7.77 137.19 1.07 8.32 16 8 N -0.38 -13.46 10.69 -58.99 -0.63 -14.09 16 9 O 0.07 2.29 10.71 74.56 0.80 3.08 16 10 C 0.21 6.74 7.06 88.35 0.62 7.36 16 11 C 0.14 4.14 5.40 85.56 0.46 4.61 16 12 N -0.54 -21.04 4.61 -906.03 -4.18 -25.23 16 13 C 0.04 1.47 9.09 127.69 1.16 2.63 16 14 C 0.19 8.22 1.65 44.17 0.07 8.29 16 15 H 0.01 0.53 7.20 -2.39 -0.02 0.51 16 16 C -0.15 -5.70 8.47 71.98 0.61 -5.09 16 17 C -0.51 -27.98 8.46 25.60 0.22 -27.77 16 18 H 0.04 2.50 6.65 -2.91 -0.02 2.48 16 19 C 0.01 0.63 5.45 84.66 0.46 1.10 16 20 N -0.95 -58.56 13.96 21.45 0.30 -58.26 16 21 Si 0.95 42.78 24.37 68.60 1.67 44.45 16 22 H -0.27 -11.41 6.87 99.48 0.68 -10.73 16 23 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 24 H -0.24 -9.60 6.53 99.48 0.65 -8.95 16 25 N -0.48 -16.66 11.25 -302.39 -3.40 -20.06 16 26 C 0.19 4.93 6.69 22.73 0.15 5.09 16 27 O -0.31 -8.15 8.83 -91.15 -0.80 -8.96 16 28 C 0.01 0.22 9.81 113.37 1.11 1.33 16 29 C -0.25 -5.10 8.96 22.43 0.20 -4.90 16 30 H 0.07 0.43 7.65 -2.39 -0.02 0.41 16 31 H 0.07 0.39 7.65 -2.38 -0.02 0.37 16 32 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.17 1.93 6.27 -2.91 -0.02 1.91 16 34 H 0.15 3.41 7.87 -2.91 -0.02 3.39 16 35 H 0.09 2.33 8.12 -2.38 -0.02 2.31 16 36 H 0.14 3.65 5.83 -2.39 -0.01 3.64 16 37 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.06 2.66 6.10 -2.39 -0.01 2.64 16 39 H 0.05 1.89 6.82 -2.38 -0.02 1.87 16 40 H 0.07 2.22 6.20 -2.39 -0.01 2.20 16 41 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 42 H 0.04 1.56 3.27 -2.39 -0.01 1.55 16 43 H 0.27 15.36 8.31 -92.70 -0.77 14.58 16 44 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.07 0.86 7.65 -2.38 -0.02 0.84 16 46 H 0.07 0.84 7.67 -2.39 -0.02 0.82 16 47 H 0.16 2.49 6.29 -2.91 -0.02 2.47 16 Total: -1.00 -73.94 377.46 1.43 -72.51 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.94 Total: 14.37 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 7.70 Total: -1.88 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -7.92 Total: -117.64 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -0.97 Total: -11.81 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.67 Total: 44.45 kcal Total: -73.94 1.43 -72.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123718564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.500 kcal (2) G-P(sol) polarization free energy of solvation -73.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds