Wall clock time and date at job start Wed Apr 1 2020 04:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35781 * 117.00071 * 2 1 4 4 C 1.38810 * 119.94059 * 0.02800 * 3 2 1 5 5 C 1.37800 * 120.16906 * 179.72083 * 4 3 2 6 6 C 1.39719 * 120.02957 * 0.50539 * 5 4 3 7 7 C 1.47612 * 120.06435 * 179.77014 * 6 5 4 8 8 O 1.21584 * 119.99915 * 200.43377 * 7 6 5 9 9 N 1.34780 * 119.99829 * 20.43150 * 7 6 5 10 10 C 1.46500 * 120.00047 * 6.94967 * 9 7 6 11 11 C 1.46503 * 120.00008 * 186.94915 * 9 7 6 12 12 H 1.09001 * 109.46827 * 0.02562 * 11 9 7 13 13 C 1.53001 * 109.46869 * 119.99796 * 11 9 7 14 14 C 1.50693 * 109.47067 * 240.00136 * 11 9 7 15 15 H 1.08003 * 120.00254 * 0.02562 * 14 11 9 16 16 C 1.37881 * 119.99846 * 179.97438 * 14 11 9 17 17 N 1.31518 * 120.00002 * 179.97438 * 16 14 11 18 18 Si 1.86803 * 119.99996 * 359.97438 * 16 14 11 19 19 H 1.48508 * 109.46992 * 90.00003 * 18 16 14 20 20 H 1.48499 * 109.47203 * 210.00037 * 18 16 14 21 21 H 1.48499 * 109.47033 * 330.00256 * 18 16 14 22 22 C 1.39699 * 119.87409 * 359.49227 * 6 5 4 23 23 C 1.38290 * 119.83216 * 0.25464 * 22 6 5 24 24 N 1.40201 * 120.01365 * 179.97438 * 23 22 6 25 25 C 1.47053 * 125.40866 * 269.71635 * 24 23 22 26 26 C 1.54097 * 103.86055 * 179.87008 * 25 24 23 27 27 N 1.47052 * 103.86594 * 0.37652 * 26 25 24 28 28 C 1.33948 * 125.40891 * 90.02241 * 24 23 22 29 29 O 1.21593 * 123.04379 * 0.02562 * 28 24 23 30 30 H 1.09004 * 109.47124 * 300.00136 * 1 2 3 31 31 H 1.09004 * 109.47302 * 59.99414 * 1 2 3 32 32 H 1.08995 * 109.47623 * 179.97438 * 1 2 3 33 33 H 1.08003 * 119.91440 * 359.97438 * 4 3 2 34 34 H 1.08002 * 119.98711 * 180.25519 * 5 4 3 35 35 H 1.09003 * 109.47312 * 266.56401 * 10 9 7 36 36 H 1.09000 * 109.47010 * 26.56041 * 10 9 7 37 37 H 1.09005 * 109.47279 * 146.56162 * 10 9 7 38 38 H 1.08997 * 109.47246 * 300.00062 * 13 11 9 39 39 H 1.09000 * 109.46857 * 179.97438 * 13 11 9 40 40 H 1.09001 * 109.47065 * 60.00551 * 13 11 9 41 41 H 0.97004 * 119.99827 * 179.97438 * 17 16 14 42 42 H 1.07999 * 120.08668 * 180.23110 * 22 6 5 43 43 H 1.09001 * 110.54774 * 298.59839 * 25 24 23 44 44 H 1.09003 * 110.54820 * 61.40784 * 25 24 23 45 45 H 1.08997 * 110.75890 * 241.67865 * 26 25 24 46 46 H 1.09004 * 110.33920 * 118.86967 * 26 25 24 47 47 H 0.96999 * 125.41600 * 179.75512 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.2883 2.3732 0.0006 5 6 1.9090 3.6035 0.0064 6 6 3.3039 3.6829 0.0010 7 6 3.9696 5.0004 0.0021 8 8 5.1229 5.0991 -0.3698 9 7 3.2988 6.0940 0.4154 10 6 1.9651 5.9557 1.0055 11 6 3.9035 7.4209 0.2746 12 1 4.8888 7.3246 -0.1817 13 6 3.0145 8.2949 -0.6124 14 6 4.0388 8.0581 1.6334 15 1 3.7079 7.5275 2.5140 16 6 4.5860 9.3180 1.7527 17 7 4.7036 9.8743 2.9386 18 14 5.1604 10.2348 0.2298 19 1 4.0396 11.0438 -0.3130 20 1 6.2895 11.1305 0.5877 21 1 5.6086 9.2589 -0.7958 22 6 4.0675 2.5131 0.0005 23 6 3.4389 1.2813 0.0000 24 7 4.2015 0.1048 -0.0011 25 6 4.6595 -0.6126 -1.2002 26 6 5.4445 -1.8123 -0.6354 27 7 5.3377 -1.6486 0.8221 28 6 4.6237 -0.5474 1.0901 29 8 4.3805 -0.1739 2.2214 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 0.2099 2.3140 0.0006 34 1 1.3169 4.5068 0.0110 35 1 1.2098 6.0757 0.2287 36 1 1.8681 4.9683 1.4570 37 1 1.8248 6.7201 1.7698 38 1 2.9167 7.8340 -1.5953 39 1 3.4642 9.2823 -0.7168 40 1 2.0291 8.3912 -0.1566 41 1 5.0890 10.7606 3.0225 42 1 5.1459 2.5705 0.0002 43 1 3.8088 -0.9532 -1.7905 44 1 5.3128 0.0217 -1.7994 45 1 6.4876 -1.7737 -0.9492 46 1 4.9837 -2.7487 -0.9500 47 1 5.7230 -2.2435 1.4843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173527517.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:52 Heat of formation + Delta-G solvation = -9.507048 kcal Electronic energy + Delta-G solvation = -31161.336381 eV Core-core repulsion = 26926.244250 eV Total energy + Delta-G solvation = -4235.092131 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.47417 -40.26805 -39.27240 -37.16052 -36.41202 -35.62804 -34.45699 -32.77747 -30.95668 -30.52430 -29.64194 -28.77873 -27.50906 -26.60435 -25.14462 -23.65863 -23.42873 -23.06749 -21.33443 -20.57065 -18.87782 -18.19519 -17.94407 -17.20436 -16.95742 -16.56189 -16.25443 -15.99451 -15.66251 -15.60703 -14.94289 -14.68479 -14.41215 -14.28970 -14.17861 -13.99744 -13.76182 -13.46172 -13.04055 -12.78818 -12.73726 -12.67345 -12.51086 -12.34908 -12.22945 -12.08101 -11.85181 -11.63036 -11.30853 -11.05526 -10.72984 -10.70842 -10.32124 -10.14727 -9.64923 -9.51170 -9.36710 -9.16183 -9.04092 -8.89707 -8.62277 -8.30023 -7.74982 -6.13021 -4.13812 0.94512 1.13135 2.33054 2.94119 3.06925 3.09006 3.23766 3.37896 3.40088 3.64196 3.75361 3.98287 4.11202 4.36166 4.56278 4.60932 4.72966 4.86325 4.89277 4.94121 4.96528 5.10927 5.16086 5.20020 5.20867 5.35269 5.40851 5.52212 5.62695 5.66733 5.78776 6.00932 6.04947 6.22953 6.25747 6.28779 6.33708 6.42584 6.48278 6.71250 6.81026 6.88718 7.12483 7.20247 7.30571 7.33785 7.62923 8.15603 8.46383 8.49702 8.83438 8.90382 9.47397 10.99699 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016221 B = 0.002821 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.793498 B = 9924.517710 C =10690.172965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.154 3.846 4 C -0.215 4.215 5 C -0.059 4.059 6 C -0.151 4.151 7 C 0.553 3.447 8 O -0.547 6.547 9 N -0.580 5.580 10 C 0.068 3.932 11 C 0.230 3.770 12 H 0.063 0.937 13 C -0.161 4.161 14 C -0.528 4.528 15 H 0.080 0.920 16 C 0.076 3.924 17 N -0.894 5.894 18 Si 0.883 3.117 19 H -0.277 1.277 20 H -0.294 1.294 21 H -0.263 1.263 22 C -0.012 4.012 23 C 0.119 3.881 24 N -0.578 5.578 25 C 0.094 3.906 26 C 0.095 3.905 27 N -0.742 5.742 28 C 0.704 3.296 29 O -0.574 6.574 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.138 0.862 34 H 0.161 0.839 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.033 0.967 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.266 0.734 42 H 0.143 0.857 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.440 -24.158 -11.499 28.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.106 3.894 4 C -0.234 4.234 5 C -0.077 4.077 6 C -0.155 4.155 7 C 0.340 3.660 8 O -0.427 6.427 9 N -0.310 5.310 10 C -0.075 4.075 11 C 0.128 3.872 12 H 0.081 0.919 13 C -0.219 4.219 14 C -0.566 4.566 15 H 0.098 0.902 16 C -0.127 4.127 17 N -0.532 5.532 18 Si 0.713 3.287 19 H -0.204 1.204 20 H -0.221 1.221 21 H -0.188 1.188 22 C -0.032 4.032 23 C 0.028 3.972 24 N -0.312 5.312 25 C -0.028 4.028 26 C -0.030 4.030 27 N -0.405 5.405 28 C 0.405 3.595 29 O -0.450 6.450 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.156 0.844 34 H 0.178 0.822 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.161 0.839 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -7.896 -23.800 -11.007 27.385 hybrid contribution 0.134 0.413 -0.462 0.634 sum -7.763 -23.387 -11.469 27.180 Atomic orbital electron populations 1.23118 0.78235 1.03990 1.01686 1.86084 1.21444 1.26570 1.87852 1.19493 0.91228 0.84786 0.93849 1.21103 1.00199 0.91455 1.10665 1.22292 0.94142 0.98831 0.92411 1.19898 0.93558 0.93898 1.08192 1.18039 0.85885 0.83561 0.78469 1.90731 1.16547 1.85833 1.49573 1.47719 1.17383 1.07378 1.58499 1.22257 0.83856 1.03062 0.98319 1.19313 0.93445 0.77678 0.96745 0.91877 1.22460 1.01364 0.99780 0.98284 1.21160 1.42209 1.01431 0.91836 0.90203 1.24869 0.94821 0.97112 0.95922 1.69880 1.44650 1.16068 1.22575 0.86915 0.78037 0.80030 0.83693 1.20400 1.22130 1.18793 1.21234 1.00994 0.89124 0.91872 1.16026 0.85539 0.84293 1.11391 1.43901 1.55909 1.25029 1.06402 1.22483 0.98966 0.92682 0.88705 1.22338 1.01211 0.98530 0.80914 1.45001 1.58888 1.28486 1.08085 1.15845 0.78738 0.80477 0.84409 1.90996 1.62811 1.70377 1.20785 0.92262 0.92373 0.88294 0.84418 0.82171 0.93057 0.91002 0.89508 0.94786 0.93070 0.92503 0.92427 0.83925 0.89778 0.89628 0.89775 0.89979 0.72835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.55 10.22 -19.05 -0.19 -3.75 16 3 C 0.15 2.01 6.71 -38.89 -0.26 1.74 16 4 C -0.22 -2.44 9.01 -39.53 -0.36 -2.80 16 5 C -0.06 -0.77 7.60 -39.19 -0.30 -1.07 16 6 C -0.15 -2.53 5.57 -104.97 -0.58 -3.11 16 7 C 0.55 11.56 7.51 -12.43 -0.09 11.47 16 8 O -0.55 -13.38 15.88 5.29 0.08 -13.30 16 9 N -0.58 -12.08 2.75 -176.46 -0.49 -12.57 16 10 C 0.07 1.10 7.67 59.85 0.46 1.56 16 11 C 0.23 5.57 2.22 -69.08 -0.15 5.41 16 12 H 0.06 1.70 5.98 -51.93 -0.31 1.39 16 13 C -0.16 -3.41 8.68 37.16 0.32 -3.08 16 14 C -0.53 -14.73 8.60 -34.44 -0.30 -15.03 16 15 H 0.08 2.40 7.52 -52.48 -0.39 2.01 16 16 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 17 N -0.89 -27.15 13.96 55.43 0.77 -26.38 16 18 Si 0.88 21.88 24.38 -169.99 -4.14 17.74 16 19 H -0.28 -6.52 6.87 56.52 0.39 -6.13 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 22 C -0.01 -0.19 9.50 -39.02 -0.37 -0.56 16 23 C 0.12 1.73 5.45 -83.53 -0.46 1.27 16 24 N -0.58 -7.52 2.71 -118.14 -0.32 -7.84 16 25 C 0.09 0.75 7.62 -3.17 -0.02 0.73 16 26 C 0.10 0.55 8.06 -3.17 -0.03 0.53 16 27 N -0.74 -7.06 6.37 -64.70 -0.41 -7.47 16 28 C 0.70 10.32 8.57 -88.39 -0.76 9.56 16 29 O -0.57 -11.24 17.66 5.28 0.09 -11.15 16 30 H 0.06 0.39 7.65 -51.93 -0.40 0.00 16 31 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.14 1.11 6.27 -52.48 -0.33 0.79 16 34 H 0.16 1.83 4.02 -52.49 -0.21 1.62 16 35 H 0.05 0.66 6.98 -51.93 -0.36 0.30 16 36 H 0.07 1.03 5.27 -51.93 -0.27 0.76 16 37 H 0.09 1.55 6.98 -51.93 -0.36 1.19 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 1.14 3.28 -51.93 -0.17 0.96 16 40 H 0.06 1.10 7.67 -51.93 -0.40 0.71 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.14 2.42 7.79 -52.49 -0.41 2.01 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.43 3.24 8.96 -40.82 -0.37 2.87 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -39.12 375.62 -7.04 -46.17 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.10 Total: 3.03 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: -2.00 Total: 9.85 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.44 Total: -54.25 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.02 Total: -28.20 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.14 Total: 17.74 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -39.12 -7.04 -46.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173527517.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.660 kcal (2) G-P(sol) polarization free energy of solvation -39.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds