Wall clock time and date at job start Wed Apr 1 2020 04:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47378 * 2 1 4 4 C 1.50700 * 109.47305 * 239.99873 * 2 1 3 5 5 H 1.07994 * 119.99728 * 240.00414 * 4 2 1 6 6 C 1.37870 * 119.99798 * 59.99800 * 4 2 1 7 7 N 1.31518 * 120.00488 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99937 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47425 * 180.02562 * 8 6 4 10 10 H 1.48504 * 109.47138 * 300.00509 * 8 6 4 11 11 H 1.48502 * 109.46906 * 60.00137 * 8 6 4 12 12 N 1.46497 * 109.47009 * 119.99722 * 2 1 3 13 13 C 1.34784 * 120.00367 * 275.00193 * 12 2 1 14 14 O 1.21361 * 119.99346 * 359.97438 * 13 12 2 15 15 C 1.49330 * 119.99954 * 179.97438 * 13 12 2 16 16 O 1.21385 * 120.00488 * 0.02562 * 15 13 12 17 17 N 1.34780 * 119.99570 * 180.02562 * 15 13 12 18 18 C 1.39909 * 119.99906 * 175.33048 * 17 15 13 19 19 C 1.39443 * 120.43217 * 34.95939 * 18 17 15 20 20 C 1.38288 * 118.41977 * 180.02562 * 19 18 17 21 21 C 1.38936 * 119.19518 * 0.02562 * 20 19 18 22 22 O 1.35731 * 119.60300 * 180.02562 * 21 20 19 23 23 C 1.42902 * 116.99957 * 180.02562 * 22 21 20 24 24 C 1.54271 * 110.02734 * 267.16670 * 23 22 21 25 25 C 1.54895 * 104.19391 * 217.10141 * 24 23 22 26 26 C 1.54898 * 102.74565 * 37.94364 * 25 24 23 27 27 C 1.53869 * 110.03372 * 150.00002 * 23 22 21 28 28 N 1.32225 * 120.79257 * 0.02562 * 21 20 19 29 29 C 1.31932 * 121.72363 * 359.69801 * 28 21 20 30 30 H 1.08999 * 109.47148 * 60.00403 * 1 2 3 31 31 H 1.08997 * 109.47378 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47390 * 300.00464 * 1 2 3 33 33 H 0.96998 * 119.99967 * 179.97438 * 7 6 4 34 34 H 0.97004 * 120.00386 * 95.00064 * 12 2 1 35 35 H 0.96998 * 120.00352 * 355.32403 * 17 15 13 36 36 H 1.08002 * 120.78922 * 0.03310 * 19 18 17 37 37 H 1.08007 * 120.40529 * 180.02562 * 20 19 18 38 38 H 1.09001 * 110.01659 * 28.60549 * 23 22 21 39 39 H 1.08990 * 110.48666 * 335.77892 * 24 23 22 40 40 H 1.09001 * 110.48266 * 98.43095 * 24 23 22 41 41 H 1.08993 * 110.75766 * 279.63260 * 25 24 23 42 42 H 1.08998 * 110.75665 * 156.25636 * 25 24 23 43 43 H 1.09001 * 110.48547 * 203.37637 * 26 25 24 44 44 H 1.08998 * 110.59868 * 80.78897 * 26 25 24 45 45 H 1.09009 * 110.03104 * 238.56612 * 27 23 22 46 46 H 1.09003 * 110.03439 * 359.97438 * 27 23 22 47 47 H 1.07996 * 119.63623 * 180.31179 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4826 7 7 0.9435 0.8301 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8280 -0.4194 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8281 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8587 1.1595 2.4115 15 6 2.6442 -0.7223 3.5766 16 8 2.9329 -1.9001 3.5222 17 7 2.7723 -0.0500 4.7377 18 6 3.1442 -0.7301 5.9025 19 6 4.0384 -1.7984 5.8417 20 6 4.3767 -2.4413 7.0183 21 6 3.8184 -2.0053 8.2136 22 8 4.1452 -2.6300 9.3734 23 6 3.5383 -2.1364 10.5694 24 6 4.4540 -1.0866 11.2322 25 6 4.2850 -1.3399 12.7509 26 6 4.1919 -2.8840 12.8316 27 6 3.3717 -3.2791 11.5862 28 7 2.9726 -0.9892 8.2347 29 6 2.6305 -0.3483 7.1334 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 0.7095 1.1617 -3.4844 34 1 2.2490 -1.6317 1.1527 35 1 2.6069 0.9053 4.7659 36 1 4.4568 -2.1160 4.8980 37 1 5.0667 -3.2722 7.0084 38 1 2.5680 -1.6955 10.3408 39 1 5.4905 -1.2412 10.9327 40 1 4.1276 -0.0790 10.9749 41 1 3.3693 -0.8780 13.1200 42 1 5.1520 -0.9758 13.3021 43 1 3.6744 -3.1879 13.7415 44 1 5.1854 -3.3306 12.7915 45 1 2.3206 -3.3922 11.8519 46 1 3.7533 -4.2103 11.1674 47 1 1.9405 0.4805 7.1902 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190098629.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:23 Heat of formation + Delta-G solvation = -77.104316 kcal Electronic energy + Delta-G solvation = -29169.265004 eV Core-core repulsion = 24931.241636 eV Total energy + Delta-G solvation = -4238.023369 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.26465 -40.31775 -39.05314 -38.07912 -36.63534 -35.39722 -34.62757 -32.48710 -32.45968 -29.91744 -29.19533 -29.09834 -28.10894 -25.40210 -24.98093 -24.18551 -22.80537 -21.20517 -21.05489 -20.55814 -19.70152 -18.92008 -18.74037 -17.48120 -16.99313 -16.39790 -15.92514 -15.81668 -15.73533 -15.62735 -15.16236 -15.06348 -14.62034 -14.34118 -13.82419 -13.77330 -13.66689 -13.51084 -13.31742 -13.03490 -12.77574 -12.52519 -12.26068 -11.85050 -11.57574 -11.49757 -11.39259 -11.32264 -11.17413 -11.05997 -11.04413 -11.03073 -10.85019 -10.54072 -10.41453 -10.30824 -9.98694 -9.74988 -9.20264 -9.11911 -8.66213 -8.20942 -8.14234 -6.20662 -4.30659 0.80588 1.02447 1.77772 2.51508 2.84475 3.23172 3.28205 3.30177 3.46578 3.66084 3.94590 4.06062 4.15993 4.19205 4.29990 4.50859 4.63219 4.77023 4.88283 4.98211 5.04095 5.05469 5.08698 5.12500 5.21834 5.25873 5.38522 5.41469 5.47565 5.52302 5.63750 5.78651 5.79213 5.85247 5.90188 5.99880 6.39305 6.67460 6.79546 6.92917 6.98109 7.08621 7.15528 7.33817 7.57277 7.58531 7.71771 7.82383 8.00980 8.37119 8.55083 8.79797 9.36546 10.85277 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.035594 B = 0.001648 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.452435 B =16987.325415 C =17409.130108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.261 3.739 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.275 1.275 12 N -0.666 5.666 13 C 0.495 3.505 14 O -0.534 6.534 15 C 0.509 3.491 16 O -0.508 6.508 17 N -0.644 5.644 18 C 0.060 3.940 19 C -0.041 4.041 20 C -0.171 4.171 21 C 0.305 3.695 22 O -0.300 6.300 23 C 0.085 3.915 24 C -0.140 4.140 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.126 4.126 28 N -0.522 5.522 29 C 0.122 3.878 30 H 0.095 0.905 31 H 0.030 0.970 32 H 0.016 0.984 33 H 0.266 0.734 34 H 0.403 0.597 35 H 0.425 0.575 36 H 0.158 0.842 37 H 0.145 0.855 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.676 -4.677 27.337 28.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.073 0.927 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.135 4.135 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.200 1.200 12 N -0.315 5.315 13 C 0.274 3.726 14 O -0.413 6.413 15 C 0.292 3.708 16 O -0.381 6.381 17 N -0.292 5.292 18 C -0.037 4.037 19 C -0.069 4.069 20 C -0.192 4.192 21 C 0.126 3.874 22 O -0.207 6.207 23 C 0.028 3.972 24 C -0.178 4.178 25 C -0.161 4.161 26 C -0.161 4.161 27 C -0.163 4.163 28 N -0.245 5.245 29 C -0.037 4.037 30 H 0.113 0.887 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.237 0.763 35 H 0.263 0.737 36 H 0.176 0.824 37 H 0.163 0.837 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.367 -4.523 27.931 28.800 hybrid contribution 0.482 -0.539 -1.590 1.747 sum 5.848 -5.062 26.341 27.453 Atomic orbital electron populations 1.22101 0.97773 0.99600 1.01250 1.18997 0.91492 0.94162 0.79283 0.92713 1.21143 1.32952 1.13543 0.90010 0.91777 1.24871 0.94650 0.94918 0.99088 1.69879 1.35593 1.22294 1.24230 0.86446 0.79223 0.79613 0.81487 1.21066 1.20083 1.20043 1.46519 1.61173 1.14554 1.09272 1.19602 0.81319 0.87284 0.84436 1.90738 1.50795 1.15161 1.84592 1.21023 0.77874 0.87021 0.84871 1.90718 1.47099 1.15727 1.84605 1.43060 1.67021 1.13049 1.06084 1.18642 0.99393 0.98270 0.87351 1.21642 0.92723 0.93322 0.99180 1.21016 1.04752 1.03972 0.89468 1.19793 0.91476 0.89503 0.86605 1.86336 1.65897 1.55239 1.13256 1.23076 0.97630 0.94503 0.81983 1.22811 1.00490 0.99144 0.95349 1.22447 1.02058 0.95980 0.95626 1.22345 1.00392 0.95945 0.97375 1.22281 1.00993 0.98526 0.94518 1.67215 1.16201 1.09608 1.31448 1.22232 0.96995 0.98799 0.85628 0.88687 0.95076 0.96443 0.92357 0.76299 0.73669 0.82410 0.83736 0.88896 0.90723 0.90816 0.91160 0.91165 0.91279 0.91280 0.90548 0.90265 0.81882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.26 37.16 0.34 -3.21 16 2 C 0.26 6.41 2.56 -69.09 -0.18 6.24 16 3 H 0.06 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.54 -13.92 8.73 -34.44 -0.30 -14.22 16 5 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.04 11.32 55.43 0.63 -23.42 16 8 Si 0.91 20.25 29.54 -169.99 -5.02 15.23 16 9 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 N -0.67 -13.78 5.06 -55.41 -0.28 -14.06 16 13 C 0.50 9.46 7.85 -11.64 -0.09 9.37 16 14 O -0.53 -11.27 16.14 5.49 0.09 -11.18 16 15 C 0.51 8.11 7.74 -11.64 -0.09 8.02 16 16 O -0.51 -8.65 13.95 5.47 0.08 -8.57 16 17 N -0.64 -8.19 5.34 -10.18 -0.05 -8.24 16 18 C 0.06 0.72 6.32 -83.54 -0.53 0.20 16 19 C -0.04 -0.51 8.80 -39.11 -0.34 -0.85 16 20 C -0.17 -1.91 10.03 -39.30 -0.39 -2.30 16 21 C 0.31 3.56 7.48 -17.12 -0.13 3.44 16 22 O -0.30 -3.27 9.67 -18.90 -0.18 -3.45 16 23 C 0.08 0.75 3.17 -25.61 -0.08 0.67 16 24 C -0.14 -1.09 6.56 -25.07 -0.16 -1.25 16 25 C -0.12 -0.73 6.91 -24.73 -0.17 -0.90 16 26 C -0.12 -0.70 6.83 -25.07 -0.17 -0.87 16 27 C -0.13 -0.88 6.61 -25.62 -0.17 -1.05 16 28 N -0.52 -6.00 8.62 -13.15 -0.11 -6.11 16 29 C 0.12 1.30 11.12 -17.33 -0.19 1.11 16 30 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.40 7.74 8.01 -40.82 -0.33 7.41 16 35 H 0.42 4.68 8.30 -40.82 -0.34 4.34 16 36 H 0.16 2.03 6.32 -52.49 -0.33 1.70 16 37 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 38 H 0.09 0.90 6.97 -51.93 -0.36 0.53 16 39 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.47 8.14 -51.92 -0.42 0.04 16 46 H 0.08 0.58 7.96 -51.93 -0.41 0.17 16 47 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 392.82 15.07 5.92 5.92 Total: -1.00 -29.39 392.82 -8.36 -37.76 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.67 Total: 10.05 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -2.75 Total: 6.09 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.18 Total: -51.83 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.02 Total: -23.21 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.39 -8.36 -37.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190098629.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.348 kcal (2) G-P(sol) polarization free energy of solvation -29.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds