Wall clock time and date at job start Wed Apr 1 2020 04:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47378 * 2 1 4 4 C 1.50700 * 109.47305 * 239.99873 * 2 1 3 5 5 H 1.07994 * 119.99728 * 240.00414 * 4 2 1 6 6 C 1.37870 * 119.99798 * 59.99800 * 4 2 1 7 7 N 1.31518 * 120.00488 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99937 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47425 * 180.02562 * 8 6 4 10 10 H 1.48504 * 109.47138 * 300.00509 * 8 6 4 11 11 H 1.48502 * 109.46906 * 60.00137 * 8 6 4 12 12 N 1.46497 * 109.47009 * 119.99722 * 2 1 3 13 13 C 1.34784 * 120.00367 * 275.00193 * 12 2 1 14 14 O 1.21361 * 119.99346 * 359.97438 * 13 12 2 15 15 C 1.49330 * 119.99954 * 179.97438 * 13 12 2 16 16 O 1.21385 * 120.00488 * 0.02562 * 15 13 12 17 17 N 1.34780 * 119.99570 * 180.02562 * 15 13 12 18 18 C 1.39909 * 119.99906 * 175.33048 * 17 15 13 19 19 C 1.39443 * 120.43217 * 34.95939 * 18 17 15 20 20 C 1.38288 * 118.41977 * 180.02562 * 19 18 17 21 21 C 1.38936 * 119.19518 * 0.02562 * 20 19 18 22 22 O 1.35731 * 119.60300 * 180.02562 * 21 20 19 23 23 C 1.42902 * 116.99957 * 180.02562 * 22 21 20 24 24 C 1.54271 * 110.02734 * 267.16670 * 23 22 21 25 25 C 1.54895 * 104.19391 * 217.10141 * 24 23 22 26 26 C 1.54898 * 102.74565 * 37.94364 * 25 24 23 27 27 C 1.53869 * 110.03372 * 150.00002 * 23 22 21 28 28 N 1.32225 * 120.79257 * 0.02562 * 21 20 19 29 29 C 1.31932 * 121.72363 * 359.69801 * 28 21 20 30 30 H 1.08999 * 109.47148 * 60.00403 * 1 2 3 31 31 H 1.08997 * 109.47378 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47390 * 300.00464 * 1 2 3 33 33 H 0.96998 * 119.99967 * 179.97438 * 7 6 4 34 34 H 0.97004 * 120.00386 * 95.00064 * 12 2 1 35 35 H 0.96998 * 120.00352 * 355.32403 * 17 15 13 36 36 H 1.08002 * 120.78922 * 0.03310 * 19 18 17 37 37 H 1.08007 * 120.40529 * 180.02562 * 20 19 18 38 38 H 1.09001 * 110.01659 * 28.60549 * 23 22 21 39 39 H 1.08990 * 110.48666 * 335.77892 * 24 23 22 40 40 H 1.09001 * 110.48266 * 98.43095 * 24 23 22 41 41 H 1.08993 * 110.75766 * 279.63260 * 25 24 23 42 42 H 1.08998 * 110.75665 * 156.25636 * 25 24 23 43 43 H 1.09001 * 110.48547 * 203.37637 * 26 25 24 44 44 H 1.08998 * 110.59868 * 80.78897 * 26 25 24 45 45 H 1.09009 * 110.03104 * 238.56612 * 27 23 22 46 46 H 1.09003 * 110.03439 * 359.97438 * 27 23 22 47 47 H 1.07996 * 119.63623 * 180.31179 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4826 7 7 0.9435 0.8301 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8280 -0.4194 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8281 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8587 1.1595 2.4115 15 6 2.6442 -0.7223 3.5766 16 8 2.9329 -1.9001 3.5222 17 7 2.7723 -0.0500 4.7377 18 6 3.1442 -0.7301 5.9025 19 6 4.0384 -1.7984 5.8417 20 6 4.3767 -2.4413 7.0183 21 6 3.8184 -2.0053 8.2136 22 8 4.1452 -2.6300 9.3734 23 6 3.5383 -2.1364 10.5694 24 6 4.4540 -1.0866 11.2322 25 6 4.2850 -1.3399 12.7509 26 6 4.1919 -2.8840 12.8316 27 6 3.3717 -3.2791 11.5862 28 7 2.9726 -0.9892 8.2347 29 6 2.6305 -0.3483 7.1334 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 0.7095 1.1617 -3.4844 34 1 2.2490 -1.6317 1.1527 35 1 2.6069 0.9053 4.7659 36 1 4.4568 -2.1160 4.8980 37 1 5.0667 -3.2722 7.0084 38 1 2.5680 -1.6955 10.3408 39 1 5.4905 -1.2412 10.9327 40 1 4.1276 -0.0790 10.9749 41 1 3.3693 -0.8780 13.1200 42 1 5.1520 -0.9758 13.3021 43 1 3.6744 -3.1879 13.7415 44 1 5.1854 -3.3306 12.7915 45 1 2.3206 -3.3922 11.8519 46 1 3.7533 -4.2103 11.1674 47 1 1.9405 0.4805 7.1902 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190098629.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:22 Heat of formation + Delta-G solvation = -96.842387 kcal Electronic energy + Delta-G solvation = -29170.120911 eV Core-core repulsion = 24931.241636 eV Total energy + Delta-G solvation = -4238.879276 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.32263 -41.44522 -40.12797 -39.30792 -37.42152 -36.98549 -35.90896 -34.33155 -33.39198 -31.18161 -30.68789 -29.68058 -28.78449 -27.37509 -26.33769 -25.06633 -23.98079 -22.53163 -21.70892 -21.51582 -21.11576 -20.22509 -19.62145 -18.69459 -18.21866 -17.73062 -17.39349 -16.96189 -16.91784 -16.58961 -16.39359 -15.97869 -15.94530 -15.43072 -15.18213 -14.96790 -14.50420 -14.46207 -14.39253 -14.30897 -13.98102 -13.73043 -13.63841 -13.08132 -12.90572 -12.88060 -12.80470 -12.65762 -12.29066 -12.19769 -12.14932 -12.06251 -11.97343 -11.78821 -11.54592 -11.32213 -11.16778 -10.95545 -10.80253 -10.62536 -10.43864 -9.98489 -9.10420 -8.19729 -6.36990 -0.20060 0.10484 0.48144 1.24700 1.47190 1.47844 1.56052 2.02084 2.10882 2.39189 2.65126 2.70428 3.11224 3.22423 3.45005 3.60125 3.62949 3.74948 3.89480 3.95828 4.06740 4.33741 4.48333 4.50933 4.56307 4.59224 4.67487 4.70473 4.74600 4.88833 4.90564 4.92266 5.01424 5.01975 5.02932 5.13794 5.19433 5.24278 5.30676 5.40900 5.42507 5.46922 5.59574 5.74909 5.92349 6.03994 6.24761 6.49370 6.64651 6.69693 6.76408 7.06464 7.35267 8.86063 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.035594 B = 0.001648 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.452435 B =16987.325415 C =17409.130108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.267 3.733 3 H 0.017 0.983 4 C -0.553 4.553 5 H 0.071 0.929 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.971 3.029 9 H -0.284 1.284 10 H -0.272 1.272 11 H -0.267 1.267 12 N -0.670 5.670 13 C 0.497 3.503 14 O -0.555 6.555 15 C 0.520 3.480 16 O -0.519 6.519 17 N -0.624 5.624 18 C 0.043 3.957 19 C -0.047 4.047 20 C -0.173 4.173 21 C 0.301 3.699 22 O -0.307 6.307 23 C 0.077 3.923 24 C -0.139 4.139 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.125 4.125 28 N -0.528 5.528 29 C 0.133 3.867 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.021 0.979 33 H 0.268 0.732 34 H 0.410 0.590 35 H 0.434 0.566 36 H 0.151 0.849 37 H 0.161 0.839 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.086 -5.632 28.975 30.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.165 3.835 3 H 0.035 0.965 4 C -0.591 4.591 5 H 0.089 0.911 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.795 3.205 9 H -0.209 1.209 10 H -0.197 1.197 11 H -0.192 1.192 12 N -0.319 5.319 13 C 0.277 3.723 14 O -0.435 6.435 15 C 0.302 3.698 16 O -0.394 6.394 17 N -0.273 5.273 18 C -0.053 4.053 19 C -0.074 4.074 20 C -0.194 4.194 21 C 0.122 3.878 22 O -0.214 6.214 23 C 0.021 3.979 24 C -0.177 4.177 25 C -0.157 4.157 26 C -0.157 4.157 27 C -0.162 4.162 28 N -0.251 5.251 29 C -0.025 4.025 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.246 0.754 35 H 0.274 0.726 36 H 0.168 0.832 37 H 0.178 0.822 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.104 0.896 46 H 0.092 0.908 47 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 5.792 -5.483 29.631 30.686 hybrid contribution 0.369 -0.205 -1.956 2.001 sum 6.161 -5.688 27.675 28.918 Atomic orbital electron populations 1.21929 0.97448 0.99784 1.00364 1.18630 0.91710 0.92478 0.80682 0.96503 1.21458 1.33118 1.13822 0.90735 0.91122 1.25704 0.94735 0.95535 1.02017 1.70008 1.36535 1.23547 1.24873 0.85417 0.78651 0.78667 0.77735 1.20913 1.19681 1.19188 1.46261 1.61815 1.14844 1.08997 1.20067 0.80311 0.86992 0.84979 1.90722 1.51417 1.16236 1.85136 1.20211 0.78354 0.86591 0.84642 1.90727 1.48031 1.15968 1.84701 1.42827 1.65744 1.13347 1.05344 1.18732 1.00438 0.98857 0.87251 1.21645 0.92977 0.93565 0.99261 1.21154 1.04952 1.04323 0.88996 1.20001 0.91287 0.89456 0.87057 1.86335 1.66084 1.55388 1.13625 1.23298 0.97311 0.95612 0.81650 1.22788 0.99644 0.98488 0.96778 1.22452 1.02871 0.96218 0.94132 1.22351 1.00366 0.95709 0.97304 1.22317 1.01899 0.97516 0.94494 1.67309 1.16409 1.09792 1.31599 1.22625 0.96411 0.98793 0.84702 0.90836 0.94212 0.95975 0.92325 0.75382 0.72618 0.83191 0.82171 0.89749 0.91530 0.91350 0.90444 0.90209 0.89738 0.91281 0.89580 0.90780 0.79158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.61 9.26 71.98 0.67 -5.94 16 2 C 0.27 13.35 2.56 44.24 0.11 13.46 16 3 H 0.02 0.97 7.58 -2.39 -0.02 0.96 16 4 C -0.55 -28.73 8.73 25.60 0.22 -28.50 16 5 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 6 C 0.02 1.10 5.30 84.65 0.45 1.55 16 7 N -0.91 -50.35 11.32 21.45 0.24 -50.10 16 8 Si 0.97 41.27 29.54 68.60 2.03 43.30 16 9 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 11 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 12 N -0.67 -27.84 5.06 -447.56 -2.27 -30.11 16 13 C 0.50 18.97 7.85 87.23 0.68 19.65 16 14 O -0.56 -23.59 16.14 -3.28 -0.05 -23.64 16 15 C 0.52 16.20 7.74 87.23 0.68 16.88 16 16 O -0.52 -17.29 13.95 -3.36 -0.05 -17.34 16 17 N -0.62 -15.14 5.34 -304.46 -1.62 -16.76 16 18 C 0.04 0.98 6.32 38.26 0.24 1.22 16 19 C -0.05 -1.12 8.80 22.57 0.20 -0.92 16 20 C -0.17 -3.69 10.03 22.45 0.23 -3.47 16 21 C 0.30 6.69 7.48 84.80 0.63 7.33 16 22 O -0.31 -6.41 9.67 -90.55 -0.88 -7.29 16 23 C 0.08 1.29 3.17 31.32 0.10 1.39 16 24 C -0.14 -2.01 6.56 31.67 0.21 -1.80 16 25 C -0.12 -1.17 6.91 31.89 0.22 -0.95 16 26 C -0.12 -1.12 6.83 31.67 0.22 -0.91 16 27 C -0.12 -1.56 6.61 31.32 0.21 -1.35 16 28 N -0.53 -11.38 8.62 -308.38 -2.66 -14.04 16 29 C 0.13 2.60 11.12 84.80 0.94 3.54 16 30 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 31 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 34 H 0.41 15.71 8.01 -92.71 -0.74 14.97 16 35 H 0.43 8.98 8.30 -92.71 -0.77 8.21 16 36 H 0.15 3.78 6.32 -2.91 -0.02 3.76 16 37 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 38 H 0.08 1.54 6.97 -2.39 -0.02 1.53 16 39 H 0.07 1.06 8.08 -2.39 -0.02 1.04 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 46 H 0.07 1.01 7.96 -2.39 -0.02 0.99 16 47 H 0.19 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -62.67 392.82 0.26 -62.42 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: -0.49 Total: 32.39 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: 6.01 Total: 21.19 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -6.31 Total: -111.01 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -0.98 Total: -48.27 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -62.67 0.26 -62.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190098629.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.425 kcal (2) G-P(sol) polarization free energy of solvation -62.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds